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PDB: 185 件

3TY8
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Crystal Structure of C. Thermocellum PNKP Ligase Domain Apo Form
分子名称: D(-)-TARTARIC ACID, GLYCEROL, Polynucleotide 2',3'-cyclic phosphate phosphodiesterase / polynucleotide 5'-hydroxyl-kinase / polynucleotide 3'-phosphatase
著者Smith, P, Wang, L, Shuman, S.
登録日2011-09-23
公開日2012-01-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The adenylyltransferase domain of bacterial Pnkp defines a unique RNA ligase family.
Proc.Natl.Acad.Sci.USA, 109, 2012
2FAR
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Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with dATP and Manganese
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
著者Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
登録日2005-12-07
公開日2006-05-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
3TA5
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Cobalt bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family
分子名称: ATP-dependent DNA ligase, N-terminal domain protein, COBALT (II) ION, ...
著者Das, U, Smith, P, Shuman, S.
登録日2011-08-03
公開日2011-10-12
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structural insights to the metal specificity of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family.
Nucleic Acids Res., 40, 2012
2F4Q
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Crystal Structure of Deinococcus radiodurans topoisomerase IB
分子名称: type I topoisomerase, putative
著者Patel, A, Shuman, S, Mondragon, A.
登録日2005-11-23
公開日2005-12-27
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of a bacterial type IB DNA topoisomerase reveals a preassembled active site in the absence of DNA.
J.Biol.Chem., 281, 2006
3TA7
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Zinc bound structure of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family
分子名称: ATP-dependent DNA ligase, N-terminal domain protein, DI(HYDROXYETHYL)ETHER, ...
著者Das, U, Smith, P, Shuman, S.
登録日2011-08-03
公開日2011-10-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structural insights to the metal specificity of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family.
Nucleic Acids Res., 40, 2012
2FAQ
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BU of 2faq by Molmil
Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with ATP and Manganese
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
著者Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
登録日2005-12-07
公開日2006-05-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
2FAO
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BU of 2fao by Molmil
Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain
分子名称: SULFATE ION, probable ATP-dependent DNA ligase
著者Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
登録日2005-12-07
公開日2006-05-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
3TV1
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BU of 3tv1 by Molmil
Crystal structure of RtcA.AMP product complex
分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
著者Chakravarty, A.K, Smith, P, Shuman, S.
登録日2011-09-19
公開日2011-12-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of RNA 3'-phosphate cyclase bound to ATP reveal the mechanism of nucleotidyl transfer and metal-assisted catalysis.
Proc.Natl.Acad.Sci.USA, 108, 2011
3TY5
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Crystal Structure of C. thermocellum PNKP Ligase domain in complex with ATP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Polynucleotide 2',3'-cyclic phosphate phosphodiesterase / polynucleotide 5'-hydroxyl-kinase / polynucleotide 3'-phosphatase, ...
著者Smith, P, Wang, L, Shuman, S.
登録日2011-09-23
公開日2012-01-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The adenylyltransferase domain of bacterial Pnkp defines a unique RNA ligase family.
Proc.Natl.Acad.Sci.USA, 109, 2012
3TW3
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BU of 3tw3 by Molmil
Crystal structure of RtcA.ATP.Co ternary complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, COBALT (II) ION, RNA 3'-terminal phosphate cyclase, ...
著者Chakravarty, A.K, Smith, P, Shuman, S.
登録日2011-09-21
公開日2011-12-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of RNA 3'-phosphate cyclase bound to ATP reveal the mechanism of nucleotidyl transfer and metal-assisted catalysis.
Proc.Natl.Acad.Sci.USA, 108, 2011

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