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PDB: 117 件
2D5M
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BU of 2d5m by Molmil
Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN MONONUCLEOTIDE, ZINC ION, ...
著者Ueda, Y, Shibata, N, Higuchi, Y.
登録日2005-11-02
公開日2006-11-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
To be Published
1WRB
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BU of 1wrb by Molmil
Crystal structure of the N-terminal RecA-like domain of DjVLGB, a pranarian Vasa-like RNA helicase
分子名称: DjVLGB, SULFATE ION
著者Kurimoto, K, Muto, Y, Obayashi, N, Terada, T, Shirouzu, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Kigawa, T, Okumura, H, Tanaka, A, Shibata, N, Kashikawa, M, Agata, K, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-10-14
公開日2005-04-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein
J.Struct.Biol., 150, 2005
1WYB
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BU of 1wyb by Molmil
Structure of 6-aminohexanoate-dimer hydrolase
分子名称: 6-aminohexanoate-dimer hydrolase
著者Negoro, S, Ohki, T, Shibata, N, Mizuno, N, Wakitani, Y, Tsurukame, J, Matsumoto, K, Kawamoto, I, Takeo, M, Higuchi, Y.
登録日2005-02-09
公開日2005-09-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of 6-aminohexanoate-dimer hydrolase
To be Published
5Y0L
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BU of 5y0l by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122G/H130Y mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, SODIUM ION, ...
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-18
公開日2018-07-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.385 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5Y0M
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BU of 5y0m by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D36A/D122G/H130Y/E263Q mutant
分子名称: CHLORIDE ION, Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, ...
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-18
公開日2018-07-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.03 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYQ
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BU of 5xyq by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122K mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, PHOSPHATE ION
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-10
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5Y4N
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BU of 5y4n by Molmil
Crystal structure of aerobically purified and anaerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y.
登録日2017-08-04
公開日2018-08-08
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2.
J.Inorg.Biochem., 177, 2017
6K7C
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BU of 6k7c by Molmil
Dimeric Shewanella violacea cytochrome c5
分子名称: HEME C, NITRATE ION, Soluble cytochrome cA
著者Yang, H, Yamanaka, M, Nagao, S, Yasuhara, K, Shibata, N, Higuchi, Y, Hirota, S.
登録日2019-06-07
公開日2019-09-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
6L1V
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BU of 6l1v by Molmil
Domain-swapped Alcaligenes xylosoxidans azurin dimer
分子名称: Azurin-1, COPPER (II) ION
著者Cahyono, R.N, Yamanaka, M, Nagao, S, Shibata, N, Higuchi, Y, Hirota, S.
登録日2019-09-30
公開日2020-02-05
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献3D domain swapping of azurin from Alcaligenes xylosoxidans.
Metallomics, 12, 2020
5Z25
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BU of 5z25 by Molmil
Trimeric Alpha-Helix-Inserted Circular Permutant of Cytochrome c555
分子名称: Cytochrome c552, HEME C, TETRAETHYLENE GLYCOL
著者Oda, A, Nagao, S, Yamanaka, M, Ueda, I, Shibata, N, Higuchi, Y, Hirota, S.
登録日2017-12-28
公開日2018-03-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an alpha-Helix-Inserted Circular Permutant of Cytochrome c555.
Chem Asian J, 13, 2018
6LTL
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BU of 6ltl by Molmil
The dimeric structure of G80A myoglobin
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-01-22
公開日2020-05-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin.
Chem Asian J, 15, 2020
6LTM
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BU of 6ltm by Molmil
The dimeric structure of G80A/H81A/H82A myoglobin
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-01-22
公開日2020-05-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin.
Chem Asian J, 15, 2020
6LS8
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BU of 6ls8 by Molmil
The monomeric structure of G80A/H81A/H82A myoglobin
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-01-17
公開日2020-05-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin.
Chem Asian J, 15, 2020
5XYT
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BU of 5xyt by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., H130Y mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, SULFATE ION
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-10
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
6JCK
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BU of 6jck by Molmil
Complex structure of Axin-DIX and Dvl2-DIX
分子名称: Axin-1, Segment polarity protein dishevelled homolog DVL-2
著者Yamanishi, K, Shibata, N.
登録日2019-01-29
公開日2020-01-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献A direct heterotypic interaction between the DIX domains of Dishevelled and Axin mediates signaling to beta-catenin.
Sci.Signal., 12, 2019
5XYG
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BU of 5xyg by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72.
分子名称: CHLORIDE ION, Endotype 6-aminohexanoat-oligomer hydrolase, GLYCEROL, ...
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-07
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYS
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BU of 5xys by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122V mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, PHOSPHATE ION
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-10
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
1WYC
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BU of 1wyc by Molmil
Structure of 6-aminohexanoate-dimer hydrolase, DN mutant
分子名称: 6-aminohexanoate-dimer hydrolase
著者Negoro, S, Ohki, T, Shibata, N, Mizuno, N, Wakitani, Y, Tsurukame, J, Matsumoto, K, Kawamoto, I, Takeo, M, Higuchi, Y.
登録日2005-02-09
公開日2006-02-21
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase
J.Mol.Biol., 370, 2007
3A66
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BU of 3a66 by Molmil
Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/H266N/D370Y mutant with substrate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOATE-DIMER HYDROLASE, 6-AMINOHEXANOIC ACID, ...
著者Kawashima, Y, Shibata, N, Higuchi, Y, Takeo, M, Negoro, S.
登録日2009-08-21
公開日2010-09-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Enzymatic Synthesis of Nylon-6 Units in Organic Sol Contained Low-Water: Structural Requirement of 6-Aminohexanoate-Dimer Hydrolase for Efficient Amid Synthesis
To be Published
3A65
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BU of 3a65 by Molmil
Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/H266N mutant with substrate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ...
著者Kawashima, Y, Shibata, N, Higuchi, Y, Takeo, M, Negoro, S.
登録日2009-08-21
公開日2010-09-01
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Enzymatic Synthesis of Nylon-6 Units in Organic Sol Contained Low-Water: Structural Requirement of 6-Aminohexanoate-Dimer Hydrolase for Efficient Amid Synthesis
To be Published
2ZM8
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BU of 2zm8 by Molmil
Structure of 6-Aminohexanoate-dimer Hydrolase, S112A/D370Y Mutant Complexed with 6-Aminohexanoate-dimer
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ...
著者Ohki, T, Shibata, N, Higuchi, Y, Kawashima, Y, Takeo, M, Kato, D, Negoro, S.
登録日2008-04-14
公開日2009-04-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Two alternative modes for optimizing nylon-6 byproduct hydrolytic activity from a carboxylesterase with a beta-lactamase fold: X-ray crystallographic analysis of directly evolved 6-aminohexanoate-dimer hydrolase.
Protein Sci., 18, 2009
2ZMA
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BU of 2zma by Molmil
Crystal Structure of 6-Aminohexanoate-dimer Hydrolase S112A/G181D/H266N/D370Y Mutant with Substrate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ...
著者Ohki, T, Shibata, N, Higuchi, Y, Takeo, M, Negoro, S.
登録日2008-04-14
公開日2009-04-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold
Febs J., 276, 2009
2ZM7
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BU of 2zm7 by Molmil
Structure of 6-Aminohexanoate-dimer Hydrolase, S112A/G181D Mutant Complexed with 6-Aminohexanoate-dimer
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ...
著者Ohki, T, Shibata, N, Higuchi, Y, Kawashima, Y, Takeo, M, Kato, D, Negoro, S.
登録日2008-04-14
公開日2009-04-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold
Febs J., 276, 2009
3VQT
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BU of 3vqt by Molmil
Crystal structure analysis of the translation factor RF3
分子名称: GUANOSINE-5'-DIPHOSPHATE, Peptide chain release factor 3
著者Kihira, K, Shomura, Y, Shibata, N, Kitamura, M, Higuchi, Y.
登録日2012-03-30
公開日2012-09-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure analysis of the translation factor RF3 (release factor 3)
Febs Lett., 586, 2012
3VWN
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BU of 3vwn by Molmil
Crystal structure of 6-aminohexanoate-dimer hydrolase G181D/R187G/H266N/D370Y mutant
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-aminohexanoate-dimer hydrolase, GLYCEROL, ...
著者Kawashima, Y, Shibata, N, Negoro, S, Higuchi, Y.
登録日2012-08-30
公開日2013-10-16
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural, kinetic and theoretical analyses of hydrolase mutants altering in the directionality and equilibrium point of reversible amide-synthetic/hydrolytic reaction
To be Published

221716

件を2024-06-26に公開中

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