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PDB: 117 件
1WUL
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BU of 1wul by Molmil
High Resolution Structure Of The Reduced State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUI
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BU of 1wui by Molmil
Ultra-High resolution Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
2CVC
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BU of 2cvc by Molmil
Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough)
分子名称: HEME C, High-molecular-weight cytochrome c precursor
著者Suto, K, Sato, M, Shibata, N, Kitamura, M, Morimoto, Y, Takayama, Y, Ozawa, K, Akutsu, H, Higuchi, Y, Yasuoka, N.
登録日2005-06-02
公開日2006-06-06
最終更新日2019-10-02
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of High-Molecular Weight Cytochrome c
To be Published
3VQT
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BU of 3vqt by Molmil
Crystal structure analysis of the translation factor RF3
分子名称: GUANOSINE-5'-DIPHOSPHATE, Peptide chain release factor 3
著者Kihira, K, Shomura, Y, Shibata, N, Kitamura, M, Higuchi, Y.
登録日2012-03-30
公開日2012-09-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure analysis of the translation factor RF3 (release factor 3)
Febs Lett., 586, 2012
3VWN
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BU of 3vwn by Molmil
Crystal structure of 6-aminohexanoate-dimer hydrolase G181D/R187G/H266N/D370Y mutant
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-aminohexanoate-dimer hydrolase, GLYCEROL, ...
著者Kawashima, Y, Shibata, N, Negoro, S, Higuchi, Y.
登録日2012-08-30
公開日2013-10-16
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural, kinetic and theoretical analyses of hydrolase mutants altering in the directionality and equilibrium point of reversible amide-synthetic/hydrolytic reaction
To be Published
5Y3C
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BU of 5y3c by Molmil
Crystal structure of zebrafish Ccd1 DIX domain
分子名称: Dixin-A
著者Terawaki, S, Shibata, N, Higuchi, Y.
登録日2017-07-28
公開日2017-09-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain.
Sci Rep, 7, 2017
5Y3B
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BU of 5y3b by Molmil
Crystal structure of mouse Ccd1 DIX domain
分子名称: Dixin
著者Terawaki, S, Shibata, N, Higuchi, Y.
登録日2017-07-28
公開日2017-09-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain.
Sci Rep, 7, 2017
6IW3
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BU of 6iw3 by Molmil
High resolution structure of Dvl2-DIX Y27W/C80S mutant
分子名称: Segment polarity protein dishevelled homolog DVL-2
著者Yamanishi, K, Shibata, N.
登録日2018-12-04
公開日2019-02-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献High-resolution structure of a Y27W mutant of the Dishevelled2 DIX domain.
Acta Crystallogr F Struct Biol Commun, 75, 2019
6K7C
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BU of 6k7c by Molmil
Dimeric Shewanella violacea cytochrome c5
分子名称: HEME C, NITRATE ION, Soluble cytochrome cA
著者Yang, H, Yamanaka, M, Nagao, S, Yasuhara, K, Shibata, N, Higuchi, Y, Hirota, S.
登録日2019-06-07
公開日2019-09-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
6JCK
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BU of 6jck by Molmil
Complex structure of Axin-DIX and Dvl2-DIX
分子名称: Axin-1, Segment polarity protein dishevelled homolog DVL-2
著者Yamanishi, K, Shibata, N.
登録日2019-01-29
公開日2020-01-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献A direct heterotypic interaction between the DIX domains of Dishevelled and Axin mediates signaling to beta-catenin.
Sci.Signal., 12, 2019
2D5M
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BU of 2d5m by Molmil
Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN MONONUCLEOTIDE, ZINC ION, ...
著者Ueda, Y, Shibata, N, Higuchi, Y.
登録日2005-11-02
公開日2006-11-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
To be Published
3VWQ
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BU of 3vwq by Molmil
6-aminohexanoate-dimer hydrolase S112A/G181D/R187A/H266N/D370Y mutant complexd with 6-aminohexanoate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ...
著者Kawashima, Y, Shibata, N, Negoro, S, Higuchi, Y.
登録日2012-08-30
公開日2013-10-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural, kinetic and theoretical analyses of hydrolase mutants altering in the directionality and equilibrium point of reversible amide-synthetic/hydrolytic reaction
to be published
2D4R
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BU of 2d4r by Molmil
Crystal structure of TTHA0849 from Thermus thermophilus HB8
分子名称: SULFATE ION, hypothetical protein TTHA0849
著者Nakabayashi, M, Shibata, N, Kuramitsu, S, Higuchi, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-23
公開日2005-12-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of a conserved hypothetical protein, TTHA0849 from Thermus thermophilus HB8, at 2.4 A resolution: a putative member of the StAR-related lipid-transfer (START) domain superfamily.
Acta Crystallogr.,Sect.F, 61, 2005
3VR1
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BU of 3vr1 by Molmil
Crystal structure analysis of the translation factor RF3
分子名称: GUANOSINE-5',3'-TETRAPHOSPHATE, Peptide chain release factor 3
著者Kihira, K, Shomura, Y, Shibata, N, Kitamura, M, Higuchi, Y.
登録日2012-04-03
公開日2012-09-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure analysis of the translation factor RF3 (release factor 3)
Febs Lett., 586, 2012
3VWP
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BU of 3vwp by Molmil
Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/R187S/H266N/D370Y mutant complexd with 6-aminohexanoate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ...
著者Kawashima, Y, Shibata, N, Negoro, S, Higuchi, Y.
登録日2012-08-30
公開日2013-10-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural, kinetic and theoretical analyses of hydrolase mutants altering in the directionality and equilibrium point of reversible amide-synthetic/hydrolytic reaction
to be published
2DCF
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BU of 2dcf by Molmil
Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/H266N mutant with substrate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-AMINOHEXANOIC ACID, 6-aminohexanoate-dimer hydrolase, ...
著者Ohki, T, Shibata, N, Higuchi, Y, Takeo, M, Negoro, S.
登録日2006-01-06
公開日2007-01-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase
J.Mol.Biol., 370, 2007
3W9R
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BU of 3w9r by Molmil
Crystal structure of the high-affinity abscisic acid receptor PYL9/RCAR9 bound to ABA
分子名称: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Abscisic acid receptor PYL9, HEXAETHYLENE GLYCOL
著者Nakagawa, M, Hirano, Y, Kagiyama, M, Shibata, N, Hakoshima, T.
登録日2013-04-13
公開日2014-04-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.
Genes Cells, 19, 2014
5XYO
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BU of 5xyo by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122G mutant
分子名称: CHLORIDE ION, Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, ...
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-10
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYP
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BU of 5xyp by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122R mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, PHOSPHATE ION
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-10
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYT
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BU of 5xyt by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., H130Y mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, SULFATE ION
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-10
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYG
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BU of 5xyg by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72.
分子名称: CHLORIDE ION, Endotype 6-aminohexanoat-oligomer hydrolase, GLYCEROL, ...
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-07
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYS
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BU of 5xys by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122V mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, PHOSPHATE ION
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-10
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5Y0L
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BU of 5y0l by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122G/H130Y mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, SODIUM ION, ...
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-18
公開日2018-07-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.385 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5Y0M
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BU of 5y0m by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D36A/D122G/H130Y/E263Q mutant
分子名称: CHLORIDE ION, Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, ...
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-18
公開日2018-07-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.03 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018
5XYQ
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Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72., D122K mutant
分子名称: Endo-type 6-aminohexanoate oligomer hydrolase, GLYCEROL, PHOSPHATE ION
著者Negoro, S, Shibata, N, Nagai, K, Higuchi, Y.
登録日2017-07-10
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase
Sci Rep, 8, 2018

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