Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1971 results

7BMJ
DownloadVisualize
BU of 7bmj by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese, 5-fluoropyridine-2,4-dicarboxylic acid, and factor X substrate peptide fragment (39mer-4Ser)
Descriptor: 5-fluoranylpyridine-2,4-dicarboxylic acid, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
Authors:Nakashima, Y, Brewitz, L, Schofield, C.J.
Deposit date:2021-01-20
Release date:2021-06-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Fluorinated derivatives of pyridine-2,4-dicarboxylate are potent inhibitors of human 2-oxoglutarate dependent oxygenases
J Fluor Chem, 247, 2021
7EMW
DownloadVisualize
BU of 7emw by Molmil
Crystal Structure of the HasAp V37G/K59Q Mutant Capturing Iron Tetraphenylporphyrin
Descriptor: GLYCEROL, Heme acquisition protein HasAp, [5,10,15,20-tetraphenylporphyrinato(2-)-kappa~4~N~21~,N~22~,N~23~,N~24~]iron
Authors:Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7EMQ
DownloadVisualize
BU of 7emq by Molmil
Crystal Structure of HasAp Capturing Manganese Tetraphenylporphyrin
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, ...
Authors:Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7EMS
DownloadVisualize
BU of 7ems by Molmil
Crystal Structure of the HasAp L85A Mutant Capturing Iron Tetraphenylporphyrin
Descriptor: GLYCEROL, Heme acquisition protein HasAp, [5,10,15,20-tetraphenylporphyrinato(2-)-kappa~4~N~21~,N~22~,N~23~,N~24~]iron
Authors:Shisaka, Y, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7EMT
DownloadVisualize
BU of 7emt by Molmil
Crystal Structure of the HasAp V37G Mutant Capturing Iron Tetraphenylporphyrin
Descriptor: Heme acquisition protein HasAp, [5,10,15,20-tetraphenylporphyrinato(2-)-kappa~4~N~21~,N~22~,N~23~,N~24~]iron
Authors:Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7EMP
DownloadVisualize
BU of 7emp by Molmil
Crystal Structure of HasAp Capturing Chromium Tetraphenylporphyrin
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, ...
Authors:Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7EMV
DownloadVisualize
BU of 7emv by Molmil
Crystal Structure of the HasAp V37G Mutant Capturing Iron-5,10,15-Triphenylporphyrin
Descriptor: 5,10,15-Triphenylporphyrin cpntaining FE, GLYCEROL, Heme acquisition protein HasAp, ...
Authors:Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7EMO
DownloadVisualize
BU of 7emo by Molmil
Crystal Structure of HasAp Capturing Iron Tetraphenylporphyrin
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, GLYCEROL, ...
Authors:Shisaka, Y, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7EMU
DownloadVisualize
BU of 7emu by Molmil
Crystal Structure of the HasAp V37G Mutant Capturing Manganese Tetraphenylporphyrin
Descriptor: GLYCEROL, Heme acquisition protein HasAp, Mn-5,10,15,20-Tetraphenylporphyrin
Authors:Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
7EMR
DownloadVisualize
BU of 7emr by Molmil
Crystal Structure of HasAp Capturing Cobalt Tetraphenylporphyrin
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, Co-5,10,15,20-Tetraphenylporphyrin, ...
Authors:Shisaka, Y, Sakakibara, E, Sugimoto, H, Shoji, O.
Deposit date:2021-04-14
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Tetraphenylporphyrin Enters the Ring: First Example of a Complex between Highly Bulky Porphyrins and a Protein.
Chembiochem, 23, 2022
4GA4
DownloadVisualize
BU of 4ga4 by Molmil
Crystal structure of AMP phosphorylase N-terminal deletion mutant
Descriptor: PHOSPHATE ION, Putative thymidine phosphorylase
Authors:Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
1BYV
DownloadVisualize
BU of 1byv by Molmil
GLYCOSYLATED EEL CALCITONIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEIN (CALCITONIN)
Authors:Hashimoto, Y, Toma, K, Nishikido, J, Yamamoto, K, Haneda, K, Inazu, T, Valentine, K.G, Opella, S.J.
Deposit date:1998-10-16
Release date:1998-10-28
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Effects of glycosylation on the structure and dynamics of eel calcitonin in micelles and lipid bilayers determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 38, 1999
1BKU
DownloadVisualize
BU of 1bku by Molmil
EFFECTS OF GLYCOSYLATION ON THE STRUCTURE AND DYNAMICS OF EEL CALCITONIN, NMR, 10 STRUCTURES
Descriptor: CALCITONIN
Authors:Hashimoto, Y, Nishikido, J, Toma, K, Yamamoto, K, Haneda, K, Inazu, T, Valentine, K, Opella, S.J.
Deposit date:1998-07-13
Release date:1999-01-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Effects of glycosylation on the structure and dynamics of eel calcitonin in micelles and lipid bilayers determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 38, 1999
1BZB
DownloadVisualize
BU of 1bzb by Molmil
GLYCOSYLATED EEL CALCITONIN
Descriptor: PROTEIN (CALCITONIN), alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Hashimoto, Y, Toma, K, Nishikido, J, Yamamoto, K, Haneda, K, Inazu, T, Valentine, K, Opella, S.J.
Deposit date:1998-10-27
Release date:1998-11-11
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:Effects of glycosylation on the structure and dynamics of eel calcitonin in micelles and lipid bilayers determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 38, 1999
2KFK
DownloadVisualize
BU of 2kfk by Molmil
Solution structure of Bem1p PB1 domain complexed with Cdc24p PB1 domain
Descriptor: Bud emergence protein 1, Cell division control protein 24
Authors:Kobashigawa, Y, Yoshinaga, S, Tandai, T, Ogura, K, Inagaki, F.
Deposit date:2009-02-23
Release date:2009-10-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae
J.Biochem., 146, 2009
1I9Y
DownloadVisualize
BU of 1i9y by Molmil
CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 5-PHOSPHATASE DOMAIN (IPP5C) OF SPSYNAPTOJANIN
Descriptor: PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE
Authors:Tsujishita, Y, Guo, S, Stolz, L, York, J.D, Hurley, J.H.
Deposit date:2001-03-21
Release date:2001-05-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase.
Cell(Cambridge,Mass.), 105, 2001
5XSV
DownloadVisualize
BU of 5xsv by Molmil
Crystal structure of an archaeal chitinase in the ligand-free form
Descriptor: COBALT (II) ION, Chitinase, SULFATE ION
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.723 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
1I9Z
DownloadVisualize
BU of 1i9z by Molmil
CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 5-PHOSPHATASE DOMAIN (IPP5C) OF SPSYNAPTOJANIN IN COMPLEX WITH INOSITOL (1,4)-BISPHOSPHATE AND CALCIUM ION
Descriptor: CALCIUM ION, D-MYO-INOSITOL-1,4-BISPHOSPHATE, PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE
Authors:Tsujishita, Y, Guo, S, Stolz, L, York, J.D, Hurley, J.H.
Deposit date:2001-03-21
Release date:2001-05-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase.
Cell(Cambridge,Mass.), 105, 2001
1I56
DownloadVisualize
BU of 1i56 by Molmil
SOLUTION STRUCTURE OF CA2+-BOUND STATE OF CANINE MILK LYSOZYME
Descriptor: LYSOZYME C
Authors:Kobashigawa, Y, Tsuda, S, Nitta, K.
Deposit date:2001-02-25
Release date:2002-02-27
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of Ca2+-bound state of canine milk lysozyme
To be Published
1J35
DownloadVisualize
BU of 1j35 by Molmil
Crystal Structure of Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein
Descriptor: CALCIUM ION, Coagulation factor IX, Coagulation factor IX-binding protein B chain, ...
Authors:Shikamoto, Y, Morita, T, Fujimoto, Z, Mizuno, H.
Deposit date:2003-01-20
Release date:2003-07-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein
J.Biol.Chem., 278, 2003
1J34
DownloadVisualize
BU of 1j34 by Molmil
Crystal Structure of Mg(II)-and Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein
Descriptor: CALCIUM ION, Coagulation factor IX, MAGNESIUM ION, ...
Authors:Shikamoto, Y, Morita, T, Fujimoto, Z, Mizuno, H.
Deposit date:2003-01-20
Release date:2003-07-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein
J.Biol.Chem., 278, 2003
5XSW
DownloadVisualize
BU of 5xsw by Molmil
Crystal structure of an archaeal chitinase in the substrate-complex form (P63)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase, GLYCEROL, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5XSX
DownloadVisualize
BU of 5xsx by Molmil
Crystal structure of an archaeal chitinase in the substrate-complex form (P212121)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase, GLYCEROL, ...
Authors:Nishitani, Y, Miki, K.
Deposit date:2017-06-15
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.642 Å)
Cite:Crystal structures of an archaeal chitinase ChiD and its ligand complexes.
Glycobiology, 28, 2018
5YBQ
DownloadVisualize
BU of 5ybq by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA-V150L/A232S in complex with preaustinoid A2
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, PrhA, ...
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018
5YBM
DownloadVisualize
BU of 5ybm by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA
Descriptor: PrhA
Authors:Nakashima, Y, Senda, M.
Deposit date:2017-09-05
Release date:2018-01-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.115 Å)
Cite:Structure function and engineering of multifunctional non-heme iron dependent oxygenases in fungal meroterpenoid biosynthesis.
Nat Commun, 9, 2018

222926

數據於2024-07-24公開中

PDB statisticsPDBj update infoContact PDBjnumon