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PDB: 112 results

4LYK
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BU of 4lyk by Molmil
Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA in complex with activating cofactor Mg++
Descriptor: 1,2-ETHANEDIOL, Cyclic di-GMP phosphodiesterase YahA, MAGNESIUM ION, ...
Authors:Sundriyal, A, Schirmer, T.
Deposit date:2013-07-31
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Inherent Regulation of EAL Domain-catalyzed Hydrolysis of Second Messenger Cyclic di-GMP.
J.Biol.Chem., 289, 2014
2VZ4
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BU of 2vz4 by Molmil
The N-terminal domain of MerR-like protein TipAL bound to promoter DNA
Descriptor: 5'-D(*CP*TP*CP*CP*TP*CP*AP*CP*GP*TP *CP*AP*CP*GP*TP*GP*AP*GP*GP*TP*G)-3', HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA
Authors:Allan, M.G, Stetefeld, J, Schirmer, T.
Deposit date:2008-07-30
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Transcriptionally Inactive Merr Domain Tipan in Complex with DNA
To be Published
4R1F
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BU of 4r1f by Molmil
Re-refined Human DNA topoisomerase IIa (ATPase and transducer domains) in complex with ADP and SO4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-alpha, GLYCEROL, ...
Authors:Stanger, F.V, Schirmer, T.
Deposit date:2014-08-05
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structure of the N-Terminal Gyrase B Fragment in Complex with ADPPi Reveals Rigid-Body Motion Induced by ATP Hydrolysis
Plos One, 9, 2014
2WB4
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activated diguanylate cyclase PleD in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), BERYLLIUM TRIFLUORIDE ION, DIGUANYLATE CYCLASE, ...
Authors:Wassmann, P, Schirmer, T.
Deposit date:2009-02-20
Release date:2010-04-21
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Activated Pled, Identification of Dimerization and Catalysis Relevant Regulatory Mechanisms
To be Published
2VZA
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BU of 2vza by Molmil
Type IV secretion system effector protein BepA
Descriptor: CELL FILAMENTATION PROTEIN, SULFATE ION
Authors:Meury, M, Schirmer, T.
Deposit date:2008-07-31
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Fic Domain Catalyzed Adenylylation: Insight Provided by the Structural Analysis of the Type Iv Secretion System Effector Bepa.
Protein Sci., 20, 2011
2W27
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BU of 2w27 by Molmil
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM
Descriptor: CALCIUM ION, GUANOSINE-5'-MONOPHOSPHATE, YKUI PROTEIN
Authors:Padavattan, S, AndERSON, W.F, Schirmer, T.
Deposit date:2008-10-24
Release date:2009-02-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of Ykui and its Complex with Second Messenger C-Di-Gmp Suggests Catalytic Mechanism of Phosphodiester Bond Cleavage by Eal Domains.
J.Biol.Chem., 284, 2009
2VXQ
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BU of 2vxq by Molmil
Crystal structure of the major grass pollen allergen Phl p 2 in complex with its specific IgE-Fab
Descriptor: FAB, POLLEN ALLERGEN PHL P 2
Authors:Padavattan, S, Flicker, S, Schirmer, T, Madritsch, C, Randow, S, Reese, G, Vieths, S, Lupinek, C, Ebner, C, Valenta, R, Markovic-Housley, Z.
Deposit date:2008-07-08
Release date:2009-02-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-Affinity Ige Recognition of a Conformational Epitope of the Major Respiratory Allergen Phl P 2 as Revealed by X-Ray Crystallography.
J.Immunol., 182, 2009
2WJQ
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BU of 2wjq by Molmil
NanC porin structure in hexagonal crystal form.
Descriptor: CHLORIDE ION, LAURYL DIMETHYLAMINE-N-OXIDE, N-OCTANE, ...
Authors:Wirth, C, Condemine, G, Schirmer, T, Peneff, C.M.
Deposit date:2009-05-28
Release date:2009-10-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Nanc Crystal Structure, a Model for Outer Membrane Channels of the Acidic Sugar-Specific Kdgm Porin Family.
J.Mol.Biol., 394, 2009
3T9O
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BU of 3t9o by Molmil
Regulatory CZB domain of DgcZ
Descriptor: Diguanylate cyclase DgcZ, ZINC ION
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-08-03
Release date:2012-09-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
2WJR
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BU of 2wjr by Molmil
NanC porin structure in rhombohedral crystal form.
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-OCTANE, PHOSPHATE ION, ...
Authors:Wirth, C, Condemine, G, Schirmer, T, Peneff, C.M.
Deposit date:2009-05-28
Release date:2009-10-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Nanc Crystal Structure, a Model for Outer Membrane Channels of the Acidic Sugar-Specific Kdgm Porin Family.
J.Mol.Biol., 394, 2009
3TVK
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BU of 3tvk by Molmil
Diguanylate cyclase domain of DgcZ
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), D(-)-TARTARIC ACID, Diguanylate cyclase DgcZ, ...
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-09-20
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
3U2E
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BU of 3u2e by Molmil
EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++
Descriptor: GGDEF family protein, MAGNESIUM ION, RNA (5'-R(P*GP*G)-3')
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Massa, C, Schirmer, T, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-10-03
Release date:2011-10-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:EAL domain from Caulobacter crescentus in complex with 5'-pGpG and Mg++
To be Published
4PGL
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BU of 4pgl by Molmil
Crystal structure of engineered D-tagatose 3-epimerase PcDTE-ILS6
Descriptor: D-tagatose 3-epimerase, L-sorbose, L-tagatose, ...
Authors:Hee, C.S, Bosshart, A, Schirmer, T.
Deposit date:2014-05-02
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Directed Divergent Evolution of a Thermostable D-Tagatose Epimerase towards Improved Activity for Two Hexose Substrates.
Chembiochem, 16, 2015
3ZC7
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BU of 3zc7 by Molmil
VbhT Fic protein from Bartonella schoenbuchensis in complex with VbhA antitoxin and ATP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT, ADENOSINE-5'-TRIPHOSPHATE, ANTITOXIN VBHA
Authors:Goepfert, A, Schirmer, T.
Deposit date:2012-11-19
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
3ZCN
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BU of 3zcn by Molmil
Fic protein from SHEWANELLA ONEIDENSIS in complex with ATP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE SOFIC, ADENOSINE-5'-TRIPHOSPHATE
Authors:Goepfert, A, Schirmer, T.
Deposit date:2012-11-21
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
3ZCB
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BU of 3zcb by Molmil
VbhT Fic protein from Bartonella schoenbuchensis in complex with VbhA antitoxin mutant E24G and ATP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT, ADENOSINE-5'-TRIPHOSPHATE, ANTITOXIN VBHA, ...
Authors:Goepfert, A, Schirmer, T.
Deposit date:2012-11-19
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
3ZLM
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BU of 3zlm by Molmil
Fic protein from Neisseria meningitidis mutant E186G in complex with AMPPNP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE NMFIC, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Goepfert, A, Schirmer, T.
Deposit date:2013-02-01
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
3ZEC
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BU of 3zec by Molmil
Fic protein from SHEWANELLA ONEIDENSIS (E73G mutant) in complex with AMPPNP
Descriptor: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE SOFIC, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Goepfert, A, Schirmer, T.
Deposit date:2012-12-04
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
Plos One, 8, 2013
4HJF
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BU of 4hjf by Molmil
EAL domain of phosphodiesterase PdeA in complex with c-di-GMP and Ca++
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CALCIUM ION, GGDEF family protein
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Massa, C, Schirmer, T, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2012-10-12
Release date:2012-10-31
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of EAL domain from Caulobacter crescentus in complex with c-di-GMP and Ca
TO BE PUBLISHED
1NRZ
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BU of 1nrz by Molmil
Crystal structure of the IIBSor domain of the sorbose permease from Klebsiella pneumoniae solved to 1.75A resolution
Descriptor: PTS system, sorbose-specific IIB component, SULFATE ION
Authors:Orriss, G.L, Erni, B, Schirmer, T.
Deposit date:2003-01-27
Release date:2003-04-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of the IIBSor domain of the sorbose permease from Klebsiella pneumoniae solved to 1.75A resolution
J.Mol.Biol., 327, 2003
1OAT
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BU of 1oat by Molmil
ORNITHINE AMINOTRANSFERASE
Descriptor: ORNITHINE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Shen, B.W, Schirmer, T, Jansonius, J.N.
Deposit date:1997-03-26
Release date:1998-04-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of human recombinant ornithine aminotransferase.
J.Mol.Biol., 277, 1998
1OXP
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BU of 1oxp by Molmil
ASPARTATE AMINOTRANSFERASE, H-ASP COMPLEX, CLOSED CONFORMATION
Descriptor: 4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE, ASPARTATE AMINOTRANSFERASE
Authors:Hohenester, E, Schirmer, T, Jansonius, J.N.
Deposit date:1995-12-23
Release date:1996-06-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures and solution studies of oxime adducts of mitochondrial aspartate aminotransferase.
Eur.J.Biochem., 236, 1996
1OXO
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BU of 1oxo by Molmil
ASPARTATE AMINOTRANSFERASE, H-ASP COMPLEX, OPEN CONFORMATION
Descriptor: 4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE, ASPARTATE AMINOTRANSFERASE
Authors:Hohenester, E, Schirmer, T, Jansonius, J.N.
Deposit date:1995-12-23
Release date:1996-06-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures and solution studies of oxime adducts of mitochondrial aspartate aminotransferase.
Eur.J.Biochem., 236, 1996
1OSM
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BU of 1osm by Molmil
OSMOPORIN (OMPK36) FROM KLEBSIELLA PNEUMONIAE
Descriptor: DODECANE, OMPK36
Authors:Dutzler, R, Schirmer, T.
Deposit date:1999-01-08
Release date:1999-07-26
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure and functional characterization of OmpK36, the osmoporin of Klebsiella pneumoniae.
Structure Fold.Des., 7, 1999
1PDO
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BU of 1pdo by Molmil
PHOSPHOENOLPYRUVATE-DEPENDENT PHOSPHOTRANSFERASE SYSTEM
Descriptor: MANNOSE PERMEASE
Authors:Nunn, R.S, Erni, B, Schirmer, T.
Deposit date:1996-03-08
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the IIA domain of the mannose transporter from Escherichia coli at 1.7 angstroms resolution.
J.Mol.Biol., 259, 1996

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