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PDB: 91 件

3A5Z
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Crystal structure of Escherichia coli GenX in complex with elongation factor P
分子名称: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, Elongation factor P, Putative lysyl-tRNA synthetase
著者Sumida, T, Yanagisawa, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-08-17
公開日2010-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P.
Nat.Struct.Mol.Biol., 17, 2010
3AU7
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Crystal structure of the ZRD-deleted mutant of TiaS in complex with agmatine
分子名称: AGMATINE, Putative uncharacterized protein
著者Numata, T, Osawa, T.
登録日2011-01-31
公開日2011-10-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis of tRNA agmatinylation essential for AUA codon decoding
Nat.Struct.Mol.Biol., 18, 2011
3AMT
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Crystal structure of the TiaS-tRNA(Ile2)-ATP complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Putative uncharacterized protein, RNA (78-MER)
著者Numata, T, Osawa, T.
登録日2010-08-23
公開日2011-10-12
最終更新日2013-06-19
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis of tRNA agmatinylation essential for AUA codon decoding
Nat.Struct.Mol.Biol., 18, 2011
3AMU
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Crystal structure of the TiaS-tRNA(Ile2)-AMPCPP-agmatine complex
分子名称: AGMATINE, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Putative uncharacterized protein, ...
著者Numata, T, Osawa, T.
登録日2010-08-23
公開日2011-10-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural basis of tRNA agmatinylation essential for AUA codon decoding
Nat.Struct.Mol.Biol., 18, 2011
3W2W
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Crystal structure of the Cmr2dHD-Cmr3 subcomplex bound to ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CRISPR system Cmr subunit Cmr2, CRISPR system Cmr subunit Cmr3, ...
著者Numata, T, Osawa, T.
登録日2012-12-06
公開日2013-10-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of the Cmr2-Cmr3 Subcomplex in the CRISPR-Cas RNA Silencing Effector Complex.
J.Mol.Biol., 425, 2013
3W2V
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Crystal structure of the Cmr2dHD-Cmr3 subcomplex bound to 3'-AMP
分子名称: CRISPR system Cmr subunit Cmr2, CRISPR system Cmr subunit Cmr3, ZINC ION, ...
著者Numata, T, Osawa, T.
登録日2012-12-06
公開日2013-10-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of the Cmr2-Cmr3 Subcomplex in the CRISPR-Cas RNA Silencing Effector Complex.
J.Mol.Biol., 425, 2013
2Z7C
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Crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii
分子名称: ARGININE, DNA/RNA-binding protein Alba
著者Hada, K, Nakashima, T, Osawa, T, Shimada, H, Kakuta, Y, Kimura, M.
登録日2007-08-17
公開日2008-08-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Biosci.Biotechnol.Biochem., 72, 2008
2ZGY
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PARM with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid segregation protein parM
著者Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
登録日2008-01-30
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZHC
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ParM filament
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid segregation protein parM
著者Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
登録日2008-02-04
公開日2008-02-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (23 Å)
主引用文献Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZXI
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Structure of Aquifex aeolicus GidA in the form II crystal
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
著者Numata, T, Osawa, T.
登録日2008-12-24
公開日2009-05-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon
Structure, 17, 2009
2ZXH
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Structure of Aquifex aeolicus GidA in the form I crystal
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
著者Numata, T, Osawa, T.
登録日2008-12-24
公開日2009-05-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon
Structure, 17, 2009
3A5Y
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Crystal structure of GenX from Escherichia coli in complex with lysyladenylate analog
分子名称: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, Putative lysyl-tRNA synthetase
著者Sumida, T, Yanagisawa, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-08-17
公開日2010-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P.
Nat.Struct.Mol.Biol., 17, 2010
2ZUE
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Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg) and an ATP analog (ANP)
分子名称: Arginyl-tRNA synthetase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Konno, M, Sumida, T, Uchikawa, E, Mori, Y, Yanagisawa, T, Sekine, S, Yokoyama, S.
登録日2008-10-16
公開日2009-08-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)
Febs J., 276, 2009
2ZGZ
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BU of 2zgz by Molmil
PARM with GMPPNP
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Plasmid segregation protein parM
著者Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
登録日2008-01-30
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZUF
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BU of 2zuf by Molmil
Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg)
分子名称: Arginyl-tRNA synthetase, tRNA-Arg
著者Konno, M, Sumida, T, Uchikawa, E, Mori, Y, Yanagisawa, T, Sekine, S, Yokoyama, S.
登録日2008-10-16
公開日2009-08-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)
Febs J., 276, 2009
2DVY
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BU of 2dvy by Molmil
Crystal structure of restriction endonucleases PabI
分子名称: Restriction endonuclease PabI
著者Miyazono, K, Watanabe, M, Kamo, M, Sawasaki, T, Nagata, K, Endo, Y, Tanokura, M, Kobayashi, I.
登録日2006-08-01
公開日2007-05-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Novel protein fold discovered in the PabI family of restriction enzymes
Nucleic Acids Res., 35, 2007
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