8XEJ
| Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc | 分子名称: | 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Fab heavy chain, Fab light chain, ... | 著者 | Sakuragi, T.S, Kanai, R.K, Kikkawa, M.K, Toyoshima, C.T, Nagata, S.N. | 登録日 | 2023-12-12 | 公開日 | 2024-02-28 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (3.66 Å) | 主引用文献 | The role of the C-terminal tail region as a plug to regulate XKR8 lipid scramblase. J.Biol.Chem., 300, 2024
|
|
7DAA
| Crystal structure of basigin complexed with anti-basigin Fab fragment | 分子名称: | CADMIUM ION, Heavy chain of antibody Fab fragment, Isoform 2 of Basigin, ... | 著者 | Sakuragi, T, Kanai, R, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Toyoshima, C, Nagata, S. | 登録日 | 2020-10-16 | 公開日 | 2021-10-20 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.51 Å) | 主引用文献 | The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes. Nat.Struct.Mol.Biol., 28, 2021
|
|
7DCE
| Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment | 分子名称: | 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Heavy chain of Fab fragment, Isoform 2 of Basigin, ... | 著者 | Sakuragi, T, Kanai, R, Tsutsumi, A, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Kikkawa, M, Toyoshima, C, Nagata, S. | 登録日 | 2020-10-26 | 公開日 | 2021-10-20 | 最終更新日 | 2024-01-24 | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | 主引用文献 | The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes. Nat.Struct.Mol.Biol., 28, 2021
|
|
7D9Z
| Crystal structure of anti-basigin Fab fragment | 分子名称: | 1,2-ETHANEDIOL, CITRATE ANION, Heavy chain of antibody Fab fragment, ... | 著者 | Sakuragi, T, Kanai, R, Narita, H, Onishi, E, Miyazaki, T, Baba, T, Nakagawa, A, Toyoshima, C, Nagata, S. | 登録日 | 2020-10-14 | 公開日 | 2021-10-20 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.123 Å) | 主引用文献 | The tertiary structure of the human Xkr8-Basigin complex that scrambles phospholipids at plasma membranes. Nat.Struct.Mol.Biol., 28, 2021
|
|
1IUP
| meta-Cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) S103A mutant complexed with isobutyrates | 分子名称: | 2-METHYL-PROPIONIC ACID, meta-Cleavage product hydrolase | 著者 | Fushinobu, S, Saku, T, Hidaka, M, Jun, S.-Y, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T. | 登録日 | 2002-03-06 | 公開日 | 2002-09-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal structures of a meta-cleavage product hydrolase from Pseudomonas
fluorescens IP01 (CumD) complexed with cleavage products PROTEIN SCI., 11, 2002
|
|
1IUN
| meta-Cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) S103A mutant hexagonal | 分子名称: | ACETATE ION, meta-Cleavage product hydrolase | 著者 | Fushinobu, S, Saku, T, Hidaka, M, Jun, S.-Y, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T. | 登録日 | 2002-03-06 | 公開日 | 2002-09-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Crystal structures of a meta-cleavage product hydrolase from Pseudomonas
fluorescens IP01 (CumD) complexed with cleavage products PROTEIN SCI., 11, 2002
|
|
1IUO
| meta-Cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) S103A mutant complexed with acetates | 分子名称: | ACETATE ION, meta-Cleavage product hydrolase | 著者 | Fushinobu, S, Saku, T, Hidaka, M, Jun, S.-Y, Nojiri, H, Yamane, H, Shoun, H, Omori, T, Wakagi, T. | 登録日 | 2002-03-06 | 公開日 | 2002-09-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structures of a meta-cleavage product hydrolase from Pseudomonas
fluorescens IP01 (CumD) complexed with cleavage products PROTEIN SCI., 11, 2002
|
|
3UAC
| Multicopper Oxidase CueO mutant C500SE506Q (data4) | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2011-10-21 | 公開日 | 2012-04-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions. Angew.Chem.Int.Ed.Engl., 51, 2012
|
|
4E9Q
| Multicopper Oxidase CueO (data2) | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2012-03-21 | 公開日 | 2013-05-01 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site. J.Mol.Biol., 373, 2007
|
|
4E9R
| Multicopper Oxidase CueO (data4) | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2012-03-21 | 公開日 | 2013-05-01 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site. J.Mol.Biol., 373, 2007
|
|
4EF3
| Multicopper Oxidase CueO (Citrate buffer) | 分子名称: | Blue copper oxidase CueO, CITRIC ACID, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2012-03-29 | 公開日 | 2013-05-22 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Exogenous acetate ion reaches the type II copper centre in CueO through the water-excretion channel and potentially affects the enzymatic activity. Acta Crystallogr.,Sect.F, 72, 2016
|
|
4NER
| Multicopper Oxidase CueO (data1) | 分子名称: | Blue copper oxidase CueO, COPPER (II) ION, HYDROXIDE ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2013-10-30 | 公開日 | 2014-03-12 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | New insights into the catalytic active-site structure of multicopper oxidases. Acta Crystallogr.,Sect.D, 70, 2014
|
|
7F19
| Structure of the G304E mutant of CueO | 分子名称: | Blue copper oxidase CueO, COPPER (II) ION, CU-O-CU LINKAGE, ... | 著者 | Takata, S.T, Kawano, T.K, Nakata, S.N, Takado, K.T, Imaizumi, R.I, Sakai, N.S, Takeshita, K.T, Yamashita, S.Y, Sakurai, T.S, Kataoka, K.K. | 登録日 | 2021-06-08 | 公開日 | 2022-06-15 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.773 Å) | 主引用文献 | Structure of the G304E mutant of CueO To Be Published
|
|
7F0V
| Structure of the M305I mutant of CueO | 分子名称: | Blue copper oxidase CueO, COPPER (II) ION, CU-O-CU LINKAGE, ... | 著者 | Kawano, T.K, Takata, S.T, Sakai, N.S, Imaizumi, R.I, Nakata, S.N, Takeshita, K.T, Yamashita, S.Y, Sakurai, T.S, Kataoka, K.K. | 登録日 | 2021-06-07 | 公開日 | 2022-06-15 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.494 Å) | 主引用文献 | Structure of the M305I mutant of CueO To Be Published
|
|
1QXE
| Structural Basis for the Potent Antisickling Effect of a Novel Class of 5-Membered Heterocyclic Aldehydic Compounds | 分子名称: | 5-HYDROXYMETHYL-FURFURAL, Hemoglobin alpha chain, Hemoglobin beta chain, ... | 著者 | Safo, M.K, Abdulmalik, O, Danso-Danquah, R, Nokuri, S, Joshi, G.S, Musayev, F.N, Asakura, T, Abraham, D.J. | 登録日 | 2003-09-05 | 公開日 | 2003-09-16 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structural basis for the potent antisickling effect of a novel class of five-membered heterocyclic aldehydic compounds J.Med.Chem., 47, 2004
|
|
1QXD
| Structural Basis for the Potent Antisickling Effect of a Novel Class of 5-Membered Heterocyclic Aldehydic Compounds | 分子名称: | FURFURAL, Hemoglobin alpha chain, Hemoglobin beta chain, ... | 著者 | Safo, M.K, Abdulmalik, O, Danso-Danquah, R, Nokuri, S, Joshi, G.S, Musayev, F.N, Asakura, T, Abraham, D.J. | 登録日 | 2003-09-05 | 公開日 | 2003-09-16 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Structural basis for the potent antisickling effect of a novel class of five-membered heterocyclic aldehydic compounds J.Med.Chem., 47, 2004
|
|
1D7N
| SOLUTION STRUCTURE ANALYSIS OF THE MASTOPARAN WITH DETERGENTS | 分子名称: | PROTEIN (WASP VENOM PEPTIDE (MASTOPARAN)) | 著者 | Hori, Y, Demura, M, Iwadate, M, Niidome, T, Aoyagi, H, Asakura, T. | 登録日 | 1999-10-19 | 公開日 | 2001-06-20 | 最終更新日 | 2022-02-16 | 実験手法 | SOLUTION NMR | 主引用文献 | Interaction of mastoparan with membranes studied by 1H-NMR spectroscopy in detergent micelles and by solid-state 2H-NMR and 15N-NMR spectroscopy in oriented lipid bilayers. Eur.J.Biochem., 268, 2001
|
|
3LZX
| Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II) | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | 著者 | Komori, H, Seo, D, Sakurai, T, Higuchi, Y. | 登録日 | 2010-03-02 | 公開日 | 2010-12-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity Protein Sci., 19, 2010
|
|
3LZW
| Crystal structure of ferredoxin-NADP+ oxidoreductase from bacillus subtilis (form I) | 分子名称: | FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | 著者 | Komori, H, Seo, D, Sakurai, T, Higuchi, Y. | 登録日 | 2010-03-02 | 公開日 | 2010-12-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity Protein Sci., 19, 2010
|
|
2D04
| Crystal structure of neoculin, a sweet protein with taste-modifying activity. | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Curculin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Shimizu-Ibuka, A, Morita, Y, Terada, T, Asakura, T, Nakajima, K, Iwata, S, Misaka, T, Sorimachi, H, Arai, S, Abe, K. | 登録日 | 2005-07-25 | 公開日 | 2006-06-20 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.76 Å) | 主引用文献 | Crystal structure of neoculin: insights into its sweetness and taste-modifying activity J.Mol.Biol., 359, 2006
|
|
4HAK
| Multicopper Oxidase CueO mutant E506A | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2012-09-26 | 公開日 | 2013-10-30 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Multicopper Oxidase CueO mutant E506A TO BE PUBLISHED
|
|
4HAL
| Multicopper Oxidase CueO mutant E506I | 分子名称: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | 著者 | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | 登録日 | 2012-09-26 | 公開日 | 2013-10-30 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Multicopper Oxidase CueO mutant E506I TO BE PUBLISHED
|
|
1CCR
| STRUCTURE OF RICE FERRICYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION | 分子名称: | CYTOCHROME C, HEME C | 著者 | Ochi, H, Hata, Y, Tanaka, N, Kakudo, M, Sakurai, T, Aihara, S, Morita, Y. | 登録日 | 1983-03-14 | 公開日 | 1983-04-21 | 最終更新日 | 2021-03-03 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Structure of rice ferricytochrome c at 2.0 A resolution. J.Mol.Biol., 166, 1983
|
|
2Y44
| Crystal structure of GARP from Trypanosoma congolense | 分子名称: | GLUTAMIC ACID/ALANINE-RICH PROTEIN, GLYCEROL, IODIDE ION | 著者 | Loveless, B.C, Mason, J.W, Sakurai, T, Inoue, N, Razavi, M, Pearson, T.W, Boulanger, M.J. | 登録日 | 2011-01-04 | 公開日 | 2011-03-30 | 最終更新日 | 2012-11-21 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Structural Characterization and Epitope Mapping of the Glutamic Acid/Alanine-Rich Protein from Trypanosoma Congolense: Defining Assembly on the Parasite Cell Surface. J.Biol.Chem., 286, 2011
|
|
1R1Y
| Crystal structure of deoxy-human hemoglobin Bassett at 1.8 angstrom | 分子名称: | Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE, ... | 著者 | Abdulmalik, O, Safo, M.K, Lerner, N.B, Ochotorena, J, Dhaikin, Y, Abraham, D.J, Asakura, T. | 登録日 | 2003-09-25 | 公開日 | 2003-10-07 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Characterization of hemoglobin bassett (alpha94Asp-->Ala), a variant with very low oxygen affinity Am.J.Hematol., 77, 2004
|
|