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PDB: 159 results

7KR2
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BU of 7kr2 by Molmil
ClpP from Neisseria meningitidis - Compressed conformation
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Ripstein, Z.A, Vahidi, S, Rubinstein, J.L, Kay, L.E.
Deposit date:2020-11-18
Release date:2021-11-24
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A pH-Dependent Conformational Switch Controls N. meningitidis ClpP Protease Function
To Be Published
7MPE
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BU of 7mpe by Molmil
Cryo-EM structure of the yeast cadmium factor 1 protein (Ycf1p)
Descriptor: Metal resistance protein YCF1
Authors:Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:2021-05-04
Release date:2021-06-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of Ycf1p reveals the transmembrane domain TMD0 and the regulatory region of ABCC transporters.
Proc.Natl.Acad.Sci.USA, 118, 2021
7MD2
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BU of 7md2 by Molmil
The F1 region of ammocidin-bound Saccharomyces cerevisiae ATP synthase
Descriptor: (3~{E},5~{Z},7~{E},9~{R},10~{S},11~{E},13~{E},15~{E},17~{R},18~{S},20~{S})-20-[(1~{R})-1-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{S},4~{S},5~{S},6~{R})-5-[(2~{S},4~{R},5~{R},6~{R})-4,6-dimethyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-methyl-4-oxidanyl-oxan-2-yl]oxy-3-methoxy-6-(3-methoxypropyl)-5-methyl-2,4-bis(oxidanyl)oxan-2-yl]ethyl]-5,18-dimethoxy-3,7,9,11,13,15-hexamethyl-10-[(2~{R},3~{S},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-17-oxidanyl-1-oxacycloicosa-3,5,7,11,13,15-hexaen-2-one, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2021-04-03
Release date:2021-08-11
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
Biorxiv, 2021
7MD3
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BU of 7md3 by Molmil
The F1 region of apoptolidin-bound Saccharomyces cerevisiae ATP synthase
Descriptor: (3~{E},5~{E},7~{E},9~{R},10~{R},11~{E},13~{E},17~{S},18~{S},20~{S})-18-methoxy-20-[(~{R})-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(2~{R})-3-methoxy-2-[(2~{R},4~{S},5~{S},6~{S})-5-[(2~{S},4~{R},5~{R},6~{R})-4-methoxy-6-methyl-5-oxidanyl-oxan-2-yl]oxy-4,6-dimethyl-4-oxidanyl-oxan-2-yl]oxy-propyl]-3,5-dimethyl-2,4-bis(oxidanyl)oxan-2-yl]-oxidanyl-methyl]-10-[(2~{R},3~{S},4~{S},5~{R},6~{S})-5-methoxy-6-methyl-3,4-bis(oxidanyl)oxan-2-yl]oxy-3,5,7,9,13-pentamethyl-17-oxidanyl-1-oxacycloicosa-3,5,7,11,13-pentaen-2-one, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2021-04-03
Release date:2021-08-11
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:A Family of Glycosylated Macrolides Selectively Target Energetic Vulnerabilities in Leukemia
Biorxiv, 2021
8SQL
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BU of 8sql by Molmil
Cleaved Ycf1p Monomer in the Beta Conformation
Descriptor: Metal resistance protein YCF1, PHOSPHATIDYLETHANOLAMINE, Unknown peptide from Ycf1p R region
Authors:Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:2023-05-04
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cleaved Ycf1p Monomer in the Beta Conformation
To Be Published
8SQM
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BU of 8sqm by Molmil
Cleaved Ycf1p Monomer in the IFwide-alpha conformation
Descriptor: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate, Metal resistance protein YCF1, Unknown peptide from Ycf1p R region
Authors:Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:2023-05-04
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of a dimeric ABC transporter
To Be Published
8SQ0
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BU of 8sq0 by Molmil
Cleaved Ycf1p Dimer in the IFwide-beta conformation
Descriptor: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate, 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, Metal resistance protein YCF1, ...
Authors:Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:2023-05-04
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of a dimeric ABC transporter
To Be Published
8UX1
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BU of 8ux1 by Molmil
Cryo-EM structure of Ran bound to RCC1 and the nucleosome core particle
Descriptor: 153-bp Widom 601 DNA forward strand, 153-bp Widom 601 DNA reverse strand, GTP-binding nuclear protein Ran, ...
Authors:Huang, S.K, Rubinstein, J.L, Kay, L.E.
Deposit date:2023-11-08
Release date:2023-11-22
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM structure of Ran bound to RCC1 and the nucleosome core particle
To Be Published
3J0J
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BU of 3j0j by Molmil
Fitted atomic models of Thermus thermophilus V-ATPase subunits into cryo-EM map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
Authors:Lau, W.C.Y, Rubinstein, J.L.
Deposit date:2011-08-24
Release date:2011-12-14
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.
Nature, 481, 2012
3J9T
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BU of 3j9t by Molmil
Yeast V-ATPase state 1
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3J9U
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BU of 3j9u by Molmil
Yeast V-ATPase state 2
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3J9V
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BU of 3j9v by Molmil
Yeast V-ATPase state 3
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
6N30
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BU of 6n30 by Molmil
Bacillus PS3 ATP synthase class 3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2018-11-14
Release date:2019-02-20
Last modified:2020-01-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of a bacterial ATP synthase.
Elife, 8, 2019
6N2Y
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BU of 6n2y by Molmil
Bacillus PS3 ATP synthase class 1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2018-11-14
Release date:2019-02-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of a bacterial ATP synthase.
Elife, 8, 2019
6N2D
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BU of 6n2d by Molmil
Bacillus PS3 ATP synthase membrane region
Descriptor: ATP synthase subunit a, ATP synthase subunit b, ATP synthase subunit c
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2018-11-12
Release date:2019-02-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a bacterial ATP synthase.
Elife, 8, 2019
6N2Z
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BU of 6n2z by Molmil
Bacillus PS3 ATP synthase class 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2018-11-14
Release date:2019-02-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of a bacterial ATP synthase.
Elife, 8, 2019
6O7X
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BU of 6o7x by Molmil
Saccharomyces cerevisiae V-ATPase Stv1-V1VO State 3
Descriptor: Putative protein YPR170W-B, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Vasanthakumar, T, Bueler, S.A, Wu, D, Beilsten-Edmands, V, Robinson, C.V, Rubinstein, J.L.
Deposit date:2019-03-08
Release date:2019-04-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Structural comparison of the vacuolar and Golgi V-ATPases fromSaccharomyces cerevisiae.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6U7H
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BU of 6u7h by Molmil
Cryo-EM structure of the HCoV-229E spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, Z, Benlekbir, S, Rubinstein, J.L, Rini, J.M.
Deposit date:2019-09-02
Release date:2019-11-13
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The human coronavirus HCoV-229E S-protein structure and receptor binding.
Elife, 8, 2019
7TK0
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BU of 7tk0 by Molmil
Yeast ATP synthase State 1catalytic(c) without exogenous ATP backbone model
Descriptor: ATP synthase protein 8, ATP synthase subunit 4, ATP synthase subunit 5, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2022-01-17
Release date:2022-04-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of ATP synthase under strain during catalysis.
Nat Commun, 13, 2022
7TJY
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BU of 7tjy by Molmil
Yeast ATP synthase State 1catalytic(a) without exogenous ATP backbone model
Descriptor: ATP synthase protein 8, ATP synthase subunit 4, ATP synthase subunit 5, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2022-01-17
Release date:2022-04-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of ATP synthase under strain during catalysis.
Nat Commun, 13, 2022
7TJZ
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BU of 7tjz by Molmil
Yeast ATP synthase State 1catalytic(b) without exogenous ATP backbone model
Descriptor: ATP synthase protein 8, ATP synthase subunit 4, ATP synthase subunit 5, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2022-01-17
Release date:2022-04-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of ATP synthase under strain during catalysis.
Nat Commun, 13, 2022
7TK3
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BU of 7tk3 by Molmil
Yeast ATP synthase State 1binding(b) with 10 mM ATP backbone model
Descriptor: ATP synthase protein 8, ATP synthase subunit 4, ATP synthase subunit 5, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2022-01-17
Release date:2022-04-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Structure of ATP synthase under strain during catalysis.
Nat Commun, 13, 2022
7TK2
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BU of 7tk2 by Molmil
Yeast ATP synthase State 1binding(a) with 10 mM ATP backbone model
Descriptor: ATP synthase protein 8, ATP synthase subunit 4, ATP synthase subunit 5, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2022-01-17
Release date:2022-04-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Structure of ATP synthase under strain during catalysis.
Nat Commun, 13, 2022
7TK4
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BU of 7tk4 by Molmil
Yeast ATP synthase State 1binding(c) with 10 mM ATP backbone model
Descriptor: ATP synthase protein 8, ATP synthase subunit 4, ATP synthase subunit 5, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2022-01-17
Release date:2022-04-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Structure of ATP synthase under strain during catalysis.
Nat Commun, 13, 2022
7TK1
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BU of 7tk1 by Molmil
Yeast ATP synthase State 1catalytic(d) without exogenous ATP backbone model
Descriptor: ATP synthase protein 8, ATP synthase subunit 4, ATP synthase subunit 5, ...
Authors:Guo, H, Rubinstein, J.L.
Deposit date:2022-01-17
Release date:2022-04-20
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Structure of ATP synthase under strain during catalysis.
Nat Commun, 13, 2022

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数据于2024-05-29公开中

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