Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 378 results

8B9F
DownloadVisualize
BU of 8b9f by Molmil
Structure of Echovirus 11 complexed with DAF (CD55) calculated from symmetry expansion
Descriptor: Complement decay-accelerating factor, Genome polyprotein, SPHINGOSINE
Authors:Stuart, D.I, Ren, J, Qin, L, Zhou, D.
Deposit date:2022-10-05
Release date:2022-12-07
Last modified:2023-01-04
Method:ELECTRON MICROSCOPY (3.93 Å)
Cite:Switching of Receptor Binding Poses between Closely Related Enteroviruses.
Viruses, 14, 2022
8B8R
DownloadVisualize
BU of 8b8r by Molmil
Complex of Echovirus 11 with its attaching receptor decay-accelerating factor (CD55)
Descriptor: DECAY ACCELERATING FACTOR (CD55), SPHINGOSINE, VP1, ...
Authors:Stuart, D.I, Ren, J, Zhou, D, Qin, L.
Deposit date:2022-10-04
Release date:2022-12-07
Last modified:2023-01-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Switching of Receptor Binding Poses between Closely Related Enteroviruses.
Viruses, 14, 2022
3DIF
DownloadVisualize
BU of 3dif by Molmil
Crystal structure of FabOX117
Descriptor: FabOX117 Heavy Chain Fragment, FabOX117 Light Chain Fragment
Authors:Nettleship, J.E, Ren, J, Owens, R.J, Oxford Protein Production Facility (OPPF)
Deposit date:2008-06-20
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A pipeline for the production of antibody fragments for structural studies using transient expression in HEK 293T cells.
Protein Expr.Purif., 62, 2008
3ME4
DownloadVisualize
BU of 3me4 by Molmil
Crystal structure of mouse RANK
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Walter, S.W, Liu, C, Zhu, X, Wu, Y, Owens, R.J, Stuart, D.I, Gao, B, Ren, J.
Deposit date:2010-03-31
Release date:2010-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural and Functional Insights of RANKL-RANK Interaction and Signaling.
J.Immunol., 2010
4R3M
DownloadVisualize
BU of 4r3m by Molmil
Crystal structure of Human Hsp90 with JR9
Descriptor: Heat shock protein HSP 90-alpha, N~3~-benzyl-2-[(6-bromo-1,3-benzodioxol-5-yl)methyl]imidazo[1,2-a]pyrazine-3,8-diamine
Authors:Li, J, Yang, M, Ren, J, Xiong, B, He, J.
Deposit date:2014-08-16
Release date:2014-11-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Multi-substituted 8-aminoimidazo[1,2-a]pyrazines by Groebke-Blackburn-Bienayme reaction and their Hsp90 inhibitory activity.
Org.Biomol.Chem., 13, 2015
1U8A
DownloadVisualize
BU of 1u8a by Molmil
Crystal Structure of Mycobacterium Tuberculosis Shikimate Kinase in Complex with Shikimate and ADP at 2.15 Angstrom Resolution
Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
Authors:Dhaliwal, B, Nichols, C.E, Ren, J, Lockyer, M, Charles, I, Hawkins, A.R, Stammers, D.K.
Deposit date:2004-08-05
Release date:2004-10-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystallographic studies of shikimate binding and induced conformational changes in Mycobacterium tuberculosis shikimate kinase.
Febs Lett., 574, 2004
3HHF
DownloadVisualize
BU of 3hhf by Molmil
Structure of CrgA regulatory domain, a LysR-type transcriptional regulator from Neisseria meningitidis.
Descriptor: CHLORIDE ION, Transcriptional regulator, LysR family
Authors:Sainsbury, S, Ren, J, Owens, R.J, Stuart, D.I, Oxford Protein Production Facility (OPPF)
Deposit date:2009-05-15
Release date:2009-07-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of CrgA from Neisseria meningitidis reveals a new octameric assembly state for LysR transcriptional regulators
Nucleic Acids Res., 37, 2009
3HHG
DownloadVisualize
BU of 3hhg by Molmil
Structure of CrgA, a LysR-type transcriptional regulator from Neisseria meningitidis.
Descriptor: Transcriptional regulator, LysR family
Authors:Sainsbury, S, Ren, J, Owens, R.J, Stuart, D.I, Oxford Protein Production Facility (OPPF)
Deposit date:2009-05-15
Release date:2009-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The structure of CrgA from Neisseria meningitidis reveals a new octameric assembly state for LysR transcriptional regulators
Nucleic Acids Res., 37, 2009
6A5Q
DownloadVisualize
BU of 6a5q by Molmil
Structure of 14-3-3 beta in complex with TFEB 14-3-3 binding motif
Descriptor: 14-3-3 protein beta/alpha, MALONIC ACID, TFEB pS211-peptide
Authors:Xu, Y, Ren, J.Q, Feng, W.
Deposit date:2018-06-25
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:YWHA/14-3-3 proteins recognize phosphorylated TFEB by a noncanonical mode for controlling TFEB cytoplasmic localization.
Autophagy, 15, 2019
3G3Z
DownloadVisualize
BU of 3g3z by Molmil
The structure of NMB1585, a MarR family regulator from Neisseria meningitidis
Descriptor: Transcriptional regulator, MarR family
Authors:Nichols, C.E, Sainsbury, S, Ren, J, Walter, T.S, Verma, A, Stammers, D.K, Saunders, N.J, Owens, R.J, Oxford Protein Production Facility (OPPF)
Deposit date:2009-02-03
Release date:2009-04-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of NMB1585, a MarR-family regulator from Neisseria meningitidis
Acta Crystallogr.,Sect.F, 65, 2009
6A5S
DownloadVisualize
BU of 6a5s by Molmil
Structure of 14-3-3 gamma in complex with TFEB 14-3-3 binding motif
Descriptor: 14-3-3 protein gamma, MAGNESIUM ION, SODIUM ION, ...
Authors:Xu, Y, Ren, J.Q, Feng, W.
Deposit date:2018-06-25
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:YWHA/14-3-3 proteins recognize phosphorylated TFEB by a noncanonical mode for controlling TFEB cytoplasmic localization.
Autophagy, 15, 2019
3ME2
DownloadVisualize
BU of 3me2 by Molmil
Crystal structure of mouse RANKL-RANK complex
Descriptor: CHLORIDE ION, SODIUM ION, Tumor necrosis factor ligand superfamily member 11, ...
Authors:Walter, S.W, Liu, C.Z, Zhu, X.K, Wu, Y, Owens, R.J, Stuart, D.I, Gao, B, Ren, J.
Deposit date:2010-03-31
Release date:2010-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and Functional Insights of RANKL-RANK Interaction and Signaling.
J.Immunol., 2010
8CII
DownloadVisualize
BU of 8cii by Molmil
Delta-RBD complex with BA.2-07 fab, SARS1-34 fab and C1 nanobody
Descriptor: BA.2-07 fab Heavy Chain, BA.2-07 fab Light Chain, C1 nanobody, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Stuart, D.I, Fry, E.E.
Deposit date:2023-02-09
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Potent cross-reactive mAbs from BA.4/5 breakthrough infection
To Be Published
5JQ3
DownloadVisualize
BU of 5jq3 by Molmil
Crystal structure of Ebola glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein 1,Envelope glycoprotein 1,Envelope glycoprotein 1, Envelope glycoprotein 2, ...
Authors:Zhao, Y, Ren, J, Stuart, D.I.
Deposit date:2016-05-04
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Toremifene interacts with and destabilizes the Ebola virus glycoprotein.
Nature, 535, 2016
5JQB
DownloadVisualize
BU of 5jqb by Molmil
Crystal structure of Ebola glycoprotein in complex with ibuprofen
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein 1,Envelope glycoprotein 1,Envelope glycoprotein 1, Envelope glycoprotein 2, ...
Authors:Zhao, Y, Ren, J, Stuart, D.I.
Deposit date:2016-05-04
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Toremifene interacts with and destabilizes the Ebola virus glycoprotein.
Nature, 535, 2016
6T4C
DownloadVisualize
BU of 6t4c by Molmil
Bovine enterovirus F3 in complex with glutathione
Descriptor: GLUTATHIONE, GLYCEROL, POTASSIUM ION, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Walter, T.S, Fry, E.E, Stuart, D.I.
Deposit date:2019-10-13
Release date:2020-01-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Glutathione facilitates enterovirus assembly by binding at a druggable pocket.
Commun Biol, 3, 2020
5JQ7
DownloadVisualize
BU of 5jq7 by Molmil
Crystal structure of Ebola glycoprotein in complex with toremifene
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, Envelope glycoprotein 1,Envelope glycoprotein 1,Envelope glycoprotein 1, ...
Authors:Zhao, Y, Ren, J, Stuart, D.I.
Deposit date:2016-05-04
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Toremifene interacts with and destabilizes the Ebola virus glycoprotein.
Nature, 535, 2016
6T40
DownloadVisualize
BU of 6t40 by Molmil
Bovine enterovirus F3 in complex with a Cysteinylglycine dipeptide
Descriptor: CHLORIDE ION, CYSTEINE, GLYCEROL, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Walter, T.S, Fry, E.E, Stuart, D.I.
Deposit date:2019-10-11
Release date:2020-08-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Glutathione facilitates enterovirus assembly by binding at a druggable pocket.
Commun Biol, 3, 2020
6T48
DownloadVisualize
BU of 6t48 by Molmil
Bovine enterovirus F3 in complex with glutathione and a Cysteinylglycine dipeptide
Descriptor: CHLORIDE ION, CYSTEINE, GLUTATHIONE, ...
Authors:Duyvesteyn, H.M.E, Ren, J, Walter, T.S, Fry, E.E, Stuart, D.I.
Deposit date:2019-10-12
Release date:2020-01-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Glutathione facilitates enterovirus assembly by binding at a druggable pocket.
Commun Biol, 3, 2020
3DOK
DownloadVisualize
BU of 3dok by Molmil
Crystal structure of K103N mutant HIV-1 reverse transcriptase in complex with GW678248.
Descriptor: 2-{4-chloro-2-[(3-chloro-5-cyanophenyl)carbonyl]phenoxy}-N-(2-methyl-4-sulfamoylphenyl)acetamide, PHOSPHATE ION, Reverse transcriptase/ribonuclease H, ...
Authors:Chamberlain, P.P, Ren, J, Stammers, D.K.
Deposit date:2008-07-04
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for the improved drug resistance profile of new generation benzophenone non-nucleoside HIV-1 reverse transcriptase inhibitors.
J.Med.Chem., 51, 2008
2CCG
DownloadVisualize
BU of 2ccg by Molmil
Crystal structure of His-tagged S. aureus thymidylate kinase complexed with thymidine monophosphate (TMP)
Descriptor: THYMIDINE-5'-PHOSPHATE, THYMIDYLATE KINASE
Authors:Kotaka, M, Dhaliwal, B, Ren, J, Nichols, C.E, Angell, R, Lockyer, M, Hawkins, A.R, Stammers, D.K.
Deposit date:2006-01-16
Release date:2006-03-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of S. Aureus Thymidylate Kinase Reveal an Atypical Active Site Configuration and an Intermediate Conformational State Upon Substrate Binding
Protein Sci., 15, 2006
3DOL
DownloadVisualize
BU of 3dol by Molmil
Crystal structure of L100I mutant HIV-1 reverse transcriptase in complex with GW695634.
Descriptor: N-({4-[({4-chloro-2-[(3-chloro-5-cyanophenyl)carbonyl]phenoxy}acetyl)amino]-3-methylphenyl}sulfonyl)propanamide, PHOSPHATE ION, Reverse transcriptase/ribonuclease H, ...
Authors:Chamberlain, P.P, Ren, J, Stammers, D.K.
Deposit date:2008-07-04
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the improved drug resistance profile of new generation benzophenone non-nucleoside HIV-1 reverse transcriptase inhibitors.
J.Med.Chem., 51, 2008
2Q5I
DownloadVisualize
BU of 2q5i by Molmil
Crystal structure of apo S581L Glycyl-tRNA synthetase mutant
Descriptor: Glycyl-tRNA synthetase, SULFATE ION
Authors:Cader, M.Z, Ren, J, James, P.A, Bird, L.E, Talbot, K, Stammers, D.K, Oxford Protein Production Facility (OPPF)
Deposit date:2007-06-01
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy.
Febs Lett., 581, 2007
5ABJ
DownloadVisualize
BU of 5abj by Molmil
Structure of Coxsackievirus A16 in complex with GPP3
Descriptor: 1-[(3S)-5-[4-[(E)-ETHOXYIMINOMETHYL]PHENOXY]-3-METHYL-PENTYL]-3-PYRIDIN-4-YL-IMIDAZOLIDIN-2-ONE, CHLORIDE ION, SODIUM ION, ...
Authors:De Colibus, L, Wang, X, Tijsma, A, Neyts, J, Spyrou, J.A.B, Ren, J, Grimes, J.M, Puerstinger, G, Leyssen, P, Fry, E.E, Rao, Z, Stuart, D.I.
Deposit date:2015-08-06
Release date:2015-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure Elucidation of Coxsackievirus A16 in Complex with Gpp3 Informs a Systematic Review of Highly Potent Capsid Binders to Enteroviruses.
Plos Pathog., 11, 2015
2Q5H
DownloadVisualize
BU of 2q5h by Molmil
Crystal structure of apo-wildtype Glycyl-tRNA synthetase
Descriptor: Glycyl-tRNA synthetase
Authors:Cader, M.Z, Ren, J, James, P.A, Bird, L.E, Talbot, K, Stammers, D.K, Oxford Protein Production Facility (OPPF)
Deposit date:2007-06-01
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy.
Febs Lett., 581, 2007

219869

건을2024-05-15부터공개중

PDB statisticsPDBj update infoContact PDBjnumon