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PDB: 906 results

6CHR
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BU of 6chr by Molmil
Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)
Descriptor: MAGNESIUM ION, RNA (5'-R(P*UP*GP*UP*UP*UP*AP*UP*UP*AP*AP*AP*AP*A)-3'), RNA (621-MER), ...
Authors:Chan, R.T, Peters, J.K, Robart, A.R, Wiryaman, T, Rajashankar, K.R, Toor, N.
Deposit date:2018-02-22
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural basis for the second step of group II intron splicing.
Nat Commun, 9, 2018
6CIH
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BU of 6cih by Molmil
Crystal structure of a group II intron lariat in the post-catalytic state
Descriptor: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, RNA (5'-R(P*UP*GP*UP*UP*UP*AP*UP*UP*AP*AP*AP*AP*AP*C*-3'), ...
Authors:Chan, R.T, Peters, J.K, Robart, A.R, Wiryaman, T, Rajashankar, K.R, Toor, N.
Deposit date:2018-02-23
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.676 Å)
Cite:Structural basis for the second step of group II intron splicing.
Nat Commun, 9, 2018
7M1M
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BU of 7m1m by Molmil
Crystal structure of Pseudomonas aeruginosa ClpP1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ATP-dependent Clp protease proteolytic subunit
Authors:Mawla, G.D, Grant, R.A, Baker, T.A, Sauer, R.T.
Deposit date:2021-03-13
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:ClpP1P2 peptidase activity promotes biofilm formation in Pseudomonas aeruginosa.
Mol.Microbiol., 115, 2021
7M1L
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BU of 7m1l by Molmil
Crystal structure of Pseudomonas aeruginosa ClpP2
Descriptor: ATP-dependent Clp protease proteolytic subunit, PHOSPHATE ION
Authors:Hall, B.M, Grant, R.A, Baker, T.A, Sauer, R.T.
Deposit date:2021-03-13
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:ClpP1P2 peptidase activity promotes biofilm formation in Pseudomonas aeruginosa.
Mol.Microbiol., 115, 2021
6DN2
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BU of 6dn2 by Molmil
CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA
Descriptor: 4-{benzyl[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]amino}butanoic acid, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
6DN3
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BU of 6dn3 by Molmil
CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA
Descriptor: 7,8-dimethyl-2,4-dioxo-10-(3-phenylpropyl)-1,2,3,4-tetrahydrobenzo[g]pteridin-10-ium, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
6DKQ
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BU of 6dkq by Molmil
Crystal structure of the Shr Hemoglobin Interacting Domain 2
Descriptor: Heme-binding protein Shr, SULFATE ION
Authors:Macdonald, R, Cascio, D, Collazo, M.J, Clubb, R.T.
Deposit date:2018-05-30
Release date:2018-10-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Streptococcus pyogenes Shr protein captures human hemoglobin using two structurally unique binding domains.
J.Biol.Chem., 293, 2018
6DN1
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BU of 6dn1 by Molmil
CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA
Descriptor: 10-(6-carboxyhexyl)-8-(cyclopentylamino)-2,4-dihydroxy-7-methylbenzo[g]pteridin-10-ium, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
7MPK
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BU of 7mpk by Molmil
Crystal structure of TagA with UDP-GlcNAc
Descriptor: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
Authors:Martinez, O.E, Cascio, D, Clubb, R.T.
Deposit date:2021-05-04
Release date:2021-12-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.993 Å)
Cite:Insight into the molecular basis of substrate recognition by the wall teichoic acid glycosyltransferase TagA.
J.Biol.Chem., 298, 2021
7N41
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BU of 7n41 by Molmil
Crystal structure of TagA with UDP-ManNAc
Descriptor: (2R,3S,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name), N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase
Authors:Martinez, O.E, Cascio, D, Clubb, R.T.
Deposit date:2021-06-03
Release date:2021-12-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Insight into the molecular basis of substrate recognition by the wall teichoic acid glycosyltransferase TagA.
J.Biol.Chem., 298, 2021
3L0E
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BU of 3l0e by Molmil
X-ray crystal structure of a Potent Liver X Receptor Modulator
Descriptor: N-(2-chloro-6-fluorobenzyl)-1-methyl-N-{[3'-(methylsulfonyl)biphenyl-4-yl]methyl}-1H-imidazole-4-sulfonamide, Nuclear receptor coactivator 2, Oxysterols receptor LXR-beta
Authors:Gampe Jr, R.T.
Deposit date:2009-12-09
Release date:2010-04-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of tertiary sulfonamides as potent liver X receptor antagonists.
J.Med.Chem., 53, 2010
3QZ0
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BU of 3qz0 by Molmil
Structure of Treponema denticola Factor H Binding protein (FhbB), selenomethionine derivative
Descriptor: Factor H binding protein, GLYCEROL, THIOCYANATE ION
Authors:Miller, D.P, McDowell, J.V, Heroux, A, Bell, J.K, Marconi, R.T, Conrad, D.H, Burgner, J.W.
Deposit date:2011-03-04
Release date:2012-03-07
Last modified:2012-06-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure of factor H-binding protein B (FhbB) of the periopathogen, Treponema denticola: insights into progression of periodontal disease.
J.Biol.Chem., 287, 2012
3R15
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BU of 3r15 by Molmil
Structure Treponema Denticola Factor H Binding Protein
Descriptor: Factor H binding protein, THIOCYANATE ION
Authors:Miller, D.P, McDowell, J.V, Burgner, J, Heroux, A, Bell, J.K, Marconi, R.T.
Deposit date:2011-03-09
Release date:2012-03-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Structure Treponema Denticola Factor H Binding Protein
To be Published
5WB4
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BU of 5wb4 by Molmil
Crystal structure of the TarA wall teichoic acid glycosyltransferase
Descriptor: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, SULFATE ION
Authors:Kattke, M.D, Cascio, D, Sawaya, M.R, Clubb, R.T.
Deposit date:2017-06-27
Release date:2019-01-16
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of TagA, a novel membrane-associated glycosyltransferase that produces wall teichoic acids in pathogenic bacteria.
Plos Pathog., 15, 2019
4LVW
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BU of 4lvw by Molmil
Structure of the THF riboswitch bound to 7-deazaguanine
Descriptor: 7-DEAZAGUANINE, THF riboswitch
Authors:Trausch, J.J, Batey, R.T.
Deposit date:2013-07-26
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.768 Å)
Cite:A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol., 21, 2014
4LVX
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BU of 4lvx by Molmil
Structure of the THF riboswitch bound to tetrahydrobiopterin
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, THF riboswitch
Authors:Trausch, J.J, Batey, R.T.
Deposit date:2013-07-26
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol., 21, 2014
4LVZ
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BU of 4lvz by Molmil
Structure of the THF riboswitch bound to 2,6-diaminopurine
Descriptor: 9H-PURINE-2,6-DIAMINE, THF riboswitch
Authors:Trausch, J.J, Batey, R.T.
Deposit date:2013-07-26
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol., 21, 2014
4LVY
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BU of 4lvy by Molmil
Structure of the THF riboswitch bound to pemetrexed
Descriptor: 2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID, THF riboswitch
Authors:Trausch, J.J, Batey, R.T.
Deposit date:2013-07-26
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol., 21, 2014
4LVV
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BU of 4lvv by Molmil
Structure of the THF riboswitch
Descriptor: N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, THF riboswitch
Authors:Trausch, J.J, Batey, R.T.
Deposit date:2013-07-26
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol., 21, 2014
4LW0
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BU of 4lw0 by Molmil
Structure of the THF riboswitch bound to adenine
Descriptor: ADENINE, THF riboswitch
Authors:Trausch, J.J, Batey, R.T.
Deposit date:2013-07-26
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.889 Å)
Cite:A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.
Chem.Biol., 21, 2014
5WFG
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BU of 5wfg by Molmil
Crystal structure of the TarA wall teichoic acid glycosyltransferase bound to UDP
Descriptor: N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, URIDINE-5'-DIPHOSPHATE
Authors:Kattke, M.D, Cascio, D, Sawaya, M.R, Clubb, R.T.
Deposit date:2017-07-11
Release date:2019-01-16
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and mechanism of TagA, a novel membrane-associated glycosyltransferase that produces wall teichoic acids in pathogenic bacteria.
Plos Pathog., 15, 2019
5JI2
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BU of 5ji2 by Molmil
HslU L199Q in HslUV complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent protease ATPase subunit HslU, ATP-dependent protease subunit HslV, ...
Authors:Grant, R.A, Sauer, R.T, Schmitz, K.R, Baytshtok, V.
Deposit date:2016-04-21
Release date:2016-11-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.307 Å)
Cite:A Structurally Dynamic Region of the HslU Intermediate Domain Controls Protein Degradation and ATP Hydrolysis.
Structure, 24, 2016
5JQH
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BU of 5jqh by Molmil
Structure of beta2 adrenoceptor bound to carazolol and inactive-state stabilizing nanobody, Nb60
Descriptor: (2S)-1-(9H-Carbazol-4-yloxy)-3-(isopropylamino)propan-2-ol, CHOLESTEROL, Endolysin,Beta-2 adrenergic receptor, ...
Authors:Staus, D.P, Strachan, R.T, Manglik, A, Pani, B, Kahsai, A.W, Kim, T.H, Wingler, L.M, Ahn, S, Chatterjee, A, Masoudi, A, Kruse, A.C, Pardon, E, Steyaert, J, Weis, W.I, Prosser, R.S, Kobilka, B.K, Costa, T, Lefkowitz, R.J.
Deposit date:2016-05-05
Release date:2016-07-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Allosteric nanobodies reveal the dynamic range and diverse mechanisms of G-protein-coupled receptor activation.
Nature, 535, 2016
7CY0
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BU of 7cy0 by Molmil
Crystal structure of S185H mutant PET hydrolase from Ideonella sakaiensis
Descriptor: ACETIC ACID, Poly(ethylene terephthalate) hydrolase
Authors:Han, X, Liu, W.D, Zheng, Y.Y, Chen, C.C, Guo, R.T.
Deposit date:2020-09-03
Release date:2021-05-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:General features to enhance enzymatic activity of poly(ethylene terephthalate) hydrolysis.
Nat Catal, 4, 2021
5KPY
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BU of 5kpy by Molmil
Structure of a 5-hydroxytryptophan aptamer
Descriptor: 5-hydroxy-L-tryptophan, 5-hydroxytryptophan RNA aptamer, IRIDIUM HEXAMMINE ION, ...
Authors:Batey, R.T, Porter, E, Merck, M.
Deposit date:2016-07-05
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors.
Nat. Chem. Biol., 13, 2017

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