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PDB: 33 件
4U5P
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BU of 4u5p by Molmil
Crystal structure of native RhCC (YP_702633.1) from Rhodococcus jostii RHA1 at 1.78 Angstrom
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ...
著者Poddar, H, Rozeboom, H.J, Thunnissen, A.M.W.H.
登録日2014-07-25
公開日2015-02-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.782 Å)
主引用文献Functional and structural characterization of an unusual cofactor-independent oxygenase.
Biochemistry, 54, 2015
4U5R
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Crystal structure of D106A mutant of RhCC (YP_702633.1) from Rhodococcus jostii RHA1 at 1.55 Angstrom
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, RhCC
著者Poddar, H, Rozeboom, H.J, Thunnissen, A.M.W.H.
登録日2014-07-25
公開日2015-02-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Functional and structural characterization of an unusual cofactor-independent oxygenase.
Biochemistry, 54, 2015
6G3E
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BU of 6g3e by Molmil
Crystal structure of EDDS lyase in complex with formate
分子名称: Argininosuccinate lyase, FORMIC ACID, SODIUM ION
著者Poddar, H, Thunnissem, A.M.W.H, Poelarends, G.J.
登録日2018-03-25
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Basis for the Catalytic Mechanism of Ethylenediamine- N, N'-disuccinic Acid Lyase, a Carbon-Nitrogen Bond-Forming Enzyme with a Broad Substrate Scope.
Biochemistry, 57, 2018
6G3D
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BU of 6g3d by Molmil
Crystal structure of Native EDDS lyase
分子名称: Argininosuccinate lyase
著者Poddar, H, Thunnissem, A.M.W.H, Poelarends, G.J.
登録日2018-03-25
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.221 Å)
主引用文献Structural Basis for the Catalytic Mechanism of Ethylenediamine- N, N'-disuccinic Acid Lyase, a Carbon-Nitrogen Bond-Forming Enzyme with a Broad Substrate Scope.
Biochemistry, 57, 2018
6G3H
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BU of 6g3h by Molmil
Crystal structure of EDDS lyase in complex with SS-EDDS
分子名称: (2~{S})-2-[2-[[(2~{S})-1,4-bis(oxidanyl)-1,4-bis(oxidanylidene)butan-2-yl]amino]ethylamino]butanedioic acid, Argininosuccinate lyase
著者Poddar, H, Thunnissem, A.M.W.H, Poelarends, G.J.
登録日2018-03-25
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.269 Å)
主引用文献Structural Basis for the Catalytic Mechanism of Ethylenediamine- N, N'-disuccinic Acid Lyase, a Carbon-Nitrogen Bond-Forming Enzyme with a Broad Substrate Scope.
Biochemistry, 57, 2018
6G3I
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BU of 6g3i by Molmil
Crystal structure of EDDS lyase in complex with N-(2-aminoethyl)aspartic acid (AEAA)
分子名称: (2~{S})-2-(2-azanylethylamino)butanedioic acid, Argininosuccinate lyase, FUMARIC ACID
著者Poddar, H, Thunnissem, A.M.W.H, Poelarends, G.J.
登録日2018-03-25
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Structural Basis for the Catalytic Mechanism of Ethylenediamine- N, N'-disuccinic Acid Lyase, a Carbon-Nitrogen Bond-Forming Enzyme with a Broad Substrate Scope.
Biochemistry, 57, 2018
6G3F
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BU of 6g3f by Molmil
Crystal structure of EDDS lyase in complex with fumarate
分子名称: Argininosuccinate lyase, DI(HYDROXYETHYL)ETHER, FUMARIC ACID
著者Poddar, H, Thunnissem, A.M.W.H, Poelarends, G.J.
登録日2018-03-25
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.222 Å)
主引用文献Structural Basis for the Catalytic Mechanism of Ethylenediamine- N, N'-disuccinic Acid Lyase, a Carbon-Nitrogen Bond-Forming Enzyme with a Broad Substrate Scope.
Biochemistry, 57, 2018
6G3G
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BU of 6g3g by Molmil
Crystal structure of EDDS lyase in complex with succinate
分子名称: Argininosuccinate lyase, DI(HYDROXYETHYL)ETHER, SUCCINIC ACID
著者Poddar, H, Thunnissem, A.M.W.H, Poelarends, G.J.
登録日2018-03-25
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.606 Å)
主引用文献Structural Basis for the Catalytic Mechanism of Ethylenediamine- N, N'-disuccinic Acid Lyase, a Carbon-Nitrogen Bond-Forming Enzyme with a Broad Substrate Scope.
Biochemistry, 57, 2018
8C36
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BU of 8c36 by Molmil
Light-adapted 2.0 Angstrom crystal structure of H132A variant of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under aerobic conditions
分子名称: COBALAMIN, Probable transcriptional regulator
著者Poddar, H, Leys, D.
登録日2022-12-23
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
8C32
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BU of 8c32 by Molmil
Dark state 2.2 Angstrom crystal structure of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under anaerobic condition
分子名称: 5'-DEOXYADENOSINE, BROMIDE ION, COBALAMIN, ...
著者Poddar, H, Leys, D.
登録日2022-12-23
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
8C33
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BU of 8c33 by Molmil
Anaerobic light exposed 2.25 Angstrom crystal structure of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH
分子名称: BROMIDE ION, COBALAMIN, Probable transcriptional regulator
著者Poddar, H, Leys, D.
登録日2022-12-23
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
8C35
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BU of 8c35 by Molmil
Dark state 2.1 Angstrom crystal structure of H132A variant of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH
分子名称: 5'-DEOXYADENOSINE, COBALAMIN, Probable transcriptional regulator
著者Poddar, H, Leys, D.
登録日2022-12-23
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
8C37
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BU of 8c37 by Molmil
An intermediate light exposed 2.15 Angstrom crystal structure of H132A variant of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under anaerobic conditions
分子名称: COBALAMIN, Probable transcriptional regulator
著者Poddar, H, Leys, D.
登録日2022-12-23
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
8C34
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BU of 8c34 by Molmil
Aerobic light exposed 1.8 Angstrom crystal structure of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH
分子名称: COBALAMIN, DI(HYDROXYETHYL)ETHER, Probable transcriptional regulator, ...
著者Poddar, H, Leys, D.
登録日2022-12-23
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
8C31
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BU of 8c31 by Molmil
Dark state 1.8 Angstrom crystal structure of cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under aerobic condition
分子名称: 1,2-ETHANEDIOL, 5'-DEOXYADENOSINE, BROMIDE ION, ...
著者Poddar, H, Leys, D.
登録日2022-12-23
公開日2023-08-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
6RQ5
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BU of 6rq5 by Molmil
CYP121 in complex with 3,5-dimethyl dicyclotyrosine
分子名称: (3~{S},6~{S})-3-[(3,5-dimethyl-4-oxidanyl-phenyl)methyl]-6-[(4-hydroxyphenyl)methyl]piperazine-2,5-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mycocyclosin synthase, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQ8
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BU of 6rq8 by Molmil
CYP121 in complex with 3-iodo dicyclotyrosine
分子名称: (3~{S},6~{S})-3-[(4-hydroxyphenyl)methyl]-6-[(3-iodanyl-4-oxidanyl-phenyl)methyl]piperazine-2,5-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mycocyclosin synthase, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQ0
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BU of 6rq0 by Molmil
CYP121 in complex with 3-methyl dicyclotyrosine
分子名称: (3~{S},6~{S})-3-[(4-hydroxyphenyl)methyl]-6-[(3-methyl-4-oxidanyl-phenyl)methyl]piperazine-2,5-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mycocyclosin synthase, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQD
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BU of 6rqd by Molmil
CYP121 in complex with 3-chloro dicyclotyrosine
分子名称: (3~{S},6~{S})-3-[(3-chloranyl-4-oxidanyl-phenyl)methyl]-6-[(4-hydroxyphenyl)methyl]piperazine-2,5-dione, Mycocyclosin synthase, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.499 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQ9
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BU of 6rq9 by Molmil
CYP121 in complex with O-methyl dicyclotyrosine
分子名称: (3~{S},6~{S})-3-[(4-hydroxyphenyl)methyl]-6-[(4-methoxyphenyl)methyl]piperazine-2,5-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mycocyclosin synthase, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQ1
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BU of 6rq1 by Molmil
CYP121 in complex with 2-methyl dicyclotyrosine
分子名称: (3~{S},6~{S})-3-[(4-hydroxyphenyl)methyl]-6-[(2-methyl-4-oxidanyl-phenyl)methyl]piperazine-2,5-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mycocyclosin synthase, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQB
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BU of 6rqb by Molmil
CYP121 in complex with 3-bromo dicyclotyrosine
分子名称: 3-bromo dicyclotyrosine, Mycocyclosin synthase, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.459 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQ6
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BU of 6rq6 by Molmil
CYP121 in complex with 3-fluoro dicyclotyrosine
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-fluoro dicyclotyrosine, Mycocyclosin synthase, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQ3
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BU of 6rq3 by Molmil
CYP121 in complex with 2,6-dimethyl dicyclotyrosine
分子名称: (3~{S},6~{S})-3-[(2,6-dimethyl-4-oxidanyl-phenyl)methyl]-6-[(4-hydroxyphenyl)methyl]piperazine-2,5-dione, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mycocyclosin synthase, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-Activity Relationships of cyclo (l-Tyrosyl-l-tyrosine) Derivatives Binding to Mycobacterium tuberculosis CYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019
6RQE
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BU of 6rqe by Molmil
CYP121 in complex with 3-acetylene dicyclotyrosine
分子名称: 3-acetylene dicyclotyrosine, Mycocyclosin synthase, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Poddar, H, Levy, C.
登録日2019-05-15
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Structure-Activity Relationships ofcyclo(l-Tyrosyl-l-tyrosine) Derivatives Binding toMycobacterium tuberculosisCYP121: Iodinated Analogues Promote Shift to High-Spin Adduct.
J.Med.Chem., 62, 2019

 

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