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PDB: 123 results

7Z46
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BU of 7z46 by Molmil
Top part (C5) of bacteriophage SU10 capsid
Descriptor: Major head protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-08-24
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7ZG7
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BU of 7zg7 by Molmil
Structure of human Apoferritin obtained from ssDNA coated grid
Descriptor: Ferritin heavy chain, SODIUM ION, ZINC ION
Authors:Hrebik, D, Plevka, P.
Deposit date:2022-04-02
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (1.77 Å)
Cite:Polyelectrolyte coating of cryo-EM grids improves lateral distribution and prevents aggregation of macromolecules.
Acta Crystallogr D Struct Biol, 78, 2022
6F5J
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BU of 6f5j by Molmil
Structure of deformed wing virus carrying the GFP gene
Descriptor: Genome polyprotein
Authors:Skubnik, K, Plevka, P.
Deposit date:2017-12-01
Release date:2018-12-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:In vivo infection dynamics of deformed wing virus (DWV) in honeybees
To Be Published
7Z4A
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BU of 7z4a by Molmil
Bacteriophage SU10 tail and bottom part of the capsid (C1)
Descriptor: Adaptor protein, Major head protein, Portal protein, ...
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-08-17
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z45
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BU of 7z45 by Molmil
Central part (C10) of bacteriophage SU10 capsid
Descriptor: Major head protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-08-24
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
5A8F
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BU of 5a8f by Molmil
Structure and genome release mechanism of human cardiovirus Saffold virus-3
Descriptor: GENOME POLYPHUMAN SAFFOLD VIRUS-3 VP3 PROTEIN, HUMAN SAFFOLD VIRUS-3 VP1, HUMAN SAFFOLD VIRUS-3 VP2
Authors:Mullapudi, E, Novacek, J, Palkova, L, Kulich, P, Lindberg, M, vanKuppeveld, F.J.M, Plevka, P.
Deposit date:2015-07-15
Release date:2016-06-08
Last modified:2019-10-30
Method:ELECTRON MICROSCOPY (10.6 Å)
Cite:Structure and Genome Release Mechanism of Human Cardiovirus Saffold Virus-3.
J.Virol., 90, 2016
7NUM
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BU of 7num by Molmil
Rhinovirus-14 ICAM-1 empty particle at pH 6.2
Descriptor: Genome polyprotein, P1
Authors:Hrebik, D, Plevka, P.
Deposit date:2021-03-12
Release date:2021-05-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:ICAM-1 induced rearrangements of capsid and genome prime rhinovirus 14 for activation and uncoating.
Proc.Natl.Acad.Sci.USA, 118, 2021
7NUO
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BU of 7nuo by Molmil
Rhinovirus 14 empty particle at pH 6.2
Descriptor: Genome polyprotein, P1
Authors:Hrebik, D, Plevka, P.
Deposit date:2021-03-12
Release date:2021-05-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:ICAM-1 induced rearrangements of capsid and genome prime rhinovirus 14 for activation and uncoating.
Proc.Natl.Acad.Sci.USA, 118, 2021
7NUL
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BU of 7nul by Molmil
Rhinovirus-14 ICAM-1 activated particle at pH 6.2
Descriptor: Genome polyprotein, P1
Authors:Hrebik, D, Plevka, P.
Deposit date:2021-03-12
Release date:2021-05-19
Method:ELECTRON MICROSCOPY (4 Å)
Cite:ICAM-1 induced rearrangements of capsid and genome prime rhinovirus 14 for activation and uncoating.
Proc.Natl.Acad.Sci.USA, 118, 2021
7Z49
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BU of 7z49 by Molmil
The capsid of bacteriophage SU10.
Descriptor: Major head protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-10-05
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z4B
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BU of 7z4b by Molmil
Bacteriophage SU10 virion (C1)
Descriptor: Adaptor, Major head protein, Portal protein, ...
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-12-28
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
5CDD
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BU of 5cdd by Molmil
Crystal Structure of Israel acute Paralysis Virus Pentamer
Descriptor: Structural polyprotein, VP1, VP2, ...
Authors:Mullapudi, E, Plevka, P.
Deposit date:2015-07-03
Release date:2016-07-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Virion Structure of Iflavirus Slow Bee Paralysis Virus at 2.6-Angstrom Resolution.
J.Virol., 90, 2016
5CFD
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BU of 5cfd by Molmil
Crystal Structure of DTT treated Human Cardiovirus SAFV-3
Descriptor: VP1, VP2, VP3, ...
Authors:Mullapudi, E, Plevka, P.
Deposit date:2015-07-08
Release date:2016-06-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3.
J.Virol., 90, 2016
5CFC
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BU of 5cfc by Molmil
Crystal Structure of Human Cardiovirus SAFV-3
Descriptor: VP1, VP2, VP3, ...
Authors:Mullapudi, E, Plevka, P.
Deposit date:2015-07-08
Release date:2016-06-15
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3.
J.Virol., 90, 2016
5CDC
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BU of 5cdc by Molmil
Crystal Structure of Israel acute Paralysis Virus
Descriptor: VP1, Structural polyprotein, VP2, ...
Authors:Mullapudi, E, Plevka, P.
Deposit date:2015-07-03
Release date:2016-07-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4 Å)
Cite:Virion Structure of Iflavirus Slow Bee Paralysis Virus at 2.6-Angstrom Resolution.
J.Virol., 90, 2016
4Z92
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BU of 4z92 by Molmil
crystal structure of parechovirus-1 virion
Descriptor: Capsid subunit VP3, RNA (5'-R(*AP*UP*UP*UP*UP*U)-3'), capsid subunit VP0, ...
Authors:Kalynych, S, Palkova, L, Plevka, P.
Deposit date:2015-04-09
Release date:2015-11-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Structure of Human Parechovirus 1 Reveals an Association of the RNA Genome with the Capsid.
J.Virol., 90, 2015
7B5F
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BU of 7b5f by Molmil
Structure of echovirus 18 in complex with neonatal Fc receptor
Descriptor: Beta-2-microglobulin, Echovirus 18 viral protein 1, Echovirus 18 viral protein 2, ...
Authors:Buchta, D, Levdansky, Y, Fuzik, T, Mukhamedova, L, Moravcova, J, Hrebik, D, Andersen, J.T, Plevka, P.
Deposit date:2020-12-03
Release date:2022-01-12
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of echovirus 18 in complex with neonatal Fc receptor
To Be Published
7BC3
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BU of 7bc3 by Molmil
Native virion of Kashmir bee virus at acidic pH
Descriptor: Structural polyprotein
Authors:Mukhamedova, L, Plevka, P, Fuzik, T, Hrebik, D, Novacek, J.
Deposit date:2020-12-18
Release date:2021-03-03
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Virion structure and in vitro genome release mechanism of dicistrovirus Kashmir bee virus.
J.Virol., 95, 2021
7BGK
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BU of 7bgk by Molmil
Native virion of Kashmir bee virus at neutral pH
Descriptor: Structural polyprotein
Authors:Mukhamedova, L, Plevka, P, Fuzik, T, Hrebik, D, Novacek, J.
Deposit date:2021-01-07
Release date:2021-03-10
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Virion structure and in vitro genome release mechanism of dicistrovirus Kashmir bee virus.
J.Virol., 95, 2021
7BE9
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BU of 7be9 by Molmil
Kashmir bee virus empty particle at acidic pH
Descriptor: Structural polyprotein
Authors:Mukhamedova, L, Plevka, P, Fuzik, T, Hrebik, D.
Deposit date:2021-01-06
Release date:2021-03-10
Last modified:2022-11-30
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Virion structure and in vitro genome release mechanism of dicistrovirus Kashmir bee virus.
J.Virol., 95, 2021
7BG7
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BU of 7bg7 by Molmil
HRV14 in complex with its receptor ICAM-1
Descriptor: Genome polyprotein, Intercellular adhesion molecule 1
Authors:Hrebik, D, Fuzik, T, Plevka, P.
Deposit date:2021-01-06
Release date:2021-05-19
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:ICAM-1 induced rearrangements of capsid and genome prime rhinovirus 14 for activation and uncoating.
Proc.Natl.Acad.Sci.USA, 118, 2021
7Z47
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BU of 7z47 by Molmil
Tail of bacteriophage SU10
Descriptor: Adaptor protein, Putative structural protein, Putative tail fiber, ...
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-08-10
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z44
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BU of 7z44 by Molmil
Portal of bacteriophage SU10
Descriptor: Portal protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-08-10
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7ZE1
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BU of 7ze1 by Molmil
Tribolium castaneum hexamerin 2
Descriptor: Larval serum protein 1 gamma chain-like Protein
Authors:Valentova, L, Fuzik, T, Plevka, P.
Deposit date:2022-03-30
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Polyelectrolyte coating of cryo-EM grids improves lateral distribution and prevents aggregation of macromolecules.
Acta Crystallogr D Struct Biol, 78, 2022
6TB9
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BU of 6tb9 by Molmil
Capsid of native GTA particle computed with C5 symmetry
Descriptor: Head spike base Rcc01079, Head spike fiber Rcc01080, Major capsid protein Rcc01687
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-01
Release date:2020-07-22
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020

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