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PDB: 54 件
7BU0
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BU of 7bu0 by Molmil
Crystal structure of a OTU deubiquitinase in complex with Ub-PA
分子名称: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine
著者Ouyang, S.Y, Zhen, X.K.
登録日2020-04-03
公開日2020-11-18
最終更新日2023-04-05
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes.
Elife, 9, 2020
7BXO
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BU of 7bxo by Molmil
Crystal structure of the toxin-antitoxin with AMP-PNP
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Toxin-antitoxin system antidote Mnt family, ...
著者Ouyang, S.Y, Zhen, X.K.
登録日2020-04-20
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.77 Å)
主引用文献Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
6M6W
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BU of 6m6w by Molmil
Crystal structure the toxin-antitoxin MntA-HpeT mutant-Y104A
分子名称: Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family
著者Ouyang, S.Y, Zhen, X.K.
登録日2020-03-16
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.611 Å)
主引用文献Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
6M6V
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BU of 6m6v by Molmil
Crystal structure the toxin-antitoxin MntA-HepT
分子名称: RNA (5'-R(P*AP*AP*A)-3'), Toxin-antitoxin system antidote Mnt family, Toxin-antitoxin system toxin HepN family
著者Ouyang, S.Y, Zhen, X.K.
登録日2020-03-16
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
6L00
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BU of 6l00 by Molmil
Crystal structure of the cell-wall binding domain (CBD) of endolysin LysIME-EF1
分子名称: Lysin
著者Ouyang, S.Y, Zhen, X.K.
登録日2019-09-25
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage.
Plos Pathog., 16, 2020
6M6U
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BU of 6m6u by Molmil
Crystal structure the toxin-antitoxin MntA-HpeT mutant-D39ED41E
分子名称: Toxin-antitoxin system antitoxin MntA family, Toxin-antitoxin system toxin HepN family
著者Ouyang, S.Y, Zhen, X.K.
登録日2020-03-16
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.349 Å)
主引用文献Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res., 48, 2020
7XVG
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BU of 7xvg by Molmil
Cryo-EM structure of binary complex of plant NLR Sr35 and effector AvrSr35
分子名称: AvrSr35, Sr35
著者Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
登録日2022-05-23
公開日2022-09-28
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7XX2
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BU of 7xx2 by Molmil
Cryo-EM structure of Sr35 resistosome induced by AvrSr35 R381A
分子名称: ADENOSINE-5'-TRIPHOSPHATE, AvrSr35, CNL9
著者Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
登録日2022-05-28
公開日2022-11-02
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
8I3Q
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BU of 8i3q by Molmil
Cryo-EM structure of Cas12g-sgRNA binary complex
分子名称: Cas12g, RNA (139-MER), ZINC ION
著者Ouyang, S.Y, Liu, M.X, Li, Z.K.
登録日2023-01-17
公開日2023-09-06
最終更新日2023-10-04
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural transitions upon guide RNA binding and their importance in Cas12g-mediated RNA cleavage.
Plos Genet., 19, 2023
7WCF
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BU of 7wcf by Molmil
Crystal structure of the kinase with AMP-PNP
分子名称: HipA_C domain-containing protein, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
著者Ouyang, S.Y, Zhen, X.
登録日2021-12-20
公開日2022-06-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3636 Å)
主引用文献Molecular mechanism of toxin neutralization in the HipBST toxin-antitoxin system of Legionella pneumophila.
Nat Commun, 13, 2022
7XDS
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BU of 7xds by Molmil
Crystal structure of wheat stem rust effector AvrSr35
分子名称: AvrSr35
著者Ouyang, S.Y, Zhao, Y.B.
登録日2022-03-28
公開日2022-09-28
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7XE0
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BU of 7xe0 by Molmil
Cryo-EM structure of plant NLR Sr35 resistosome
分子名称: ADENOSINE-5'-TRIPHOSPHATE, AvrSr35, Sr35
著者Ouyang, S.Y, Zhao, Y.B, Li, Z.K, Liu, M.X.
登録日2022-03-29
公開日2022-09-28
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.33 Å)
主引用文献Pathogen effector AvrSr35 triggers Sr35 resistosome assembly via a direct recognition mechanism.
Sci Adv, 8, 2022
7CNB
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BU of 7cnb by Molmil
Crystal structure of Gp16 C-terminal domain from Bacillus virus phi29
分子名称: DNA packaging protein
著者Ouyang, S.Y, Saeed, A.F.U.H.
登録日2020-07-30
公開日2021-03-24
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Structural Insights into gp16 ATPase in the Bacteriophage φ29 DNA Packaging Motor.
Biochemistry, 60, 2021
6IM4
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BU of 6im4 by Molmil
Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of bacteriophages
分子名称: AimR transcriptional regulator, GLY-MET-PRO-ARG-GLY-ALA
著者Ouyang, S.Y.
登録日2018-10-22
公開日2019-01-23
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structural basis of AimP signaling molecule recognition by AimR in Spbeta group of bacteriophages.
Protein Cell, 10, 2019
6JKY
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BU of 6jky by Molmil
Crystal structure of MvcA-UBE2N-Ub complex from Legionella pneumophila
分子名称: MvcA, Ub, Ubiquitin-conjugating enzyme E2 N
著者Ouyang, S.Y, Guan, H.
登録日2019-03-03
公開日2019-12-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.454 Å)
主引用文献Legionella pneumophila regulates the activity of UBE2N by deamidase-mediated deubiquitination.
Embo J., 39, 2020
6K4R
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BU of 6k4r by Molmil
Crystal structure of SidJ-CaM-AMP ternary complex at 3.11 A
分子名称: ADENOSINE MONOPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
著者Ouyang, S.Y.
登録日2019-05-26
公開日2019-07-24
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.109 Å)
主引用文献Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
6IST
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BU of 6ist by Molmil
Crystal structure of a wild type endolysin LysIME-EF1
分子名称: CALCIUM ION, Lysin
著者Ouyang, S.Y.
登録日2018-11-19
公開日2019-11-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage.
Plos Pathog., 16, 2020
6K4K
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BU of 6k4k by Molmil
Crystal structure of SidJ-CaM binary complex at 2.71 A
分子名称: CALCIUM ION, Calmodulin-1, SidJ
著者Ouyang, S.Y.
登録日2019-05-24
公開日2019-07-24
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.715 Å)
主引用文献Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
6K4L
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BU of 6k4l by Molmil
Crystal structure of Se-labelled SidJ complex with CaM at 2.95 A
分子名称: CALCIUM ION, CHLORIDE ION, Calmodulin-1, ...
著者Ouyang, S.Y.
登録日2019-05-24
公開日2019-07-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.949 Å)
主引用文献Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature, 572, 2019
8J9B
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BU of 8j9b by Molmil
LnaB-actin binary complex
分子名称: Actin gamma 1, Type IV secretion protein Dot
著者Chen, T.T, Ouyang, S.Y.
登録日2023-05-03
公開日2024-05-08
実験手法X-RAY DIFFRACTION (3.42 Å)
主引用文献Structure of Legionella effector LnaB-actin binary complex
To Be Published
7XGX
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BU of 7xgx by Molmil
Glucosyltransferase
分子名称: Lgt2, URIDINE-5'-DIPHOSPHATE-GLUCOSE
著者Chen, T.T, Ouyang, S.Y.
登録日2022-04-07
公開日2023-04-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Structural Basis for the Action Mechanism of Legionella Glycosyltransferase.
Small Struct, 2023
9J4L
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BU of 9j4l by Molmil
Crystal structure of GH9l Inulin fructotransferases (IFTase)
分子名称: DFA-III-forming inulin fructotransferase
著者Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
登録日2024-08-09
公開日2024-09-04
最終更新日2024-09-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024
9J4I
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BU of 9j4i by Molmil
Crystal structure of GH9l Inulin fructotransferases (IFTase) in compex with fruetosyl nystose (GF4)
分子名称: DFA-III-forming inulin fructotransferase, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-[alpha-D-glucopyranose-(1-2)]beta-D-fructofuranose, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-[alpha-D-glucopyranose-(1-2)]beta-D-fructofuranose
著者Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
登録日2024-08-09
公開日2024-09-04
最終更新日2024-09-18
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024
9J4J
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BU of 9j4j by Molmil
Crystal structure of GH9l Inulin fructotransferases(IFTase)incomplex with nystose(F3)
分子名称: DFA-III-forming inulin fructotransferase, beta-D-fructofuranose, beta-D-fructofuranose-(1-1)-beta-D-fructofuranose, ...
著者Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
登録日2024-08-09
公開日2024-09-04
最終更新日2024-09-18
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024
9J4K
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BU of 9j4k by Molmil
Crystal structure of GH9l Inulinfructotransferases (IFTase) in complex with GF2
分子名称: DFA-III-forming inulin fructotransferase, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
登録日2024-08-09
公開日2024-09-04
最終更新日2024-09-18
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024

 

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