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PDB: 63 results

4ZZ5
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X-ray crystal structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
Descriptor: 1,2-ETHANEDIOL, Glucanase/chitosanase, SULFATE ION
Authors:Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
Deposit date:2015-05-22
Release date:2016-04-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
7F3E
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Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus
Descriptor: RNA-free ribonuclease P
Authors:Teramoto, T, Koyasu, T, Adachi, N, Kawasaki, M, Moriya, T, Numata, T, Senda, T, Kakuta, Y.
Deposit date:2021-06-16
Release date:2021-08-11
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis.
J.Biol.Chem., 297, 2021
1X0T
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BU of 1x0t by Molmil
Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
Descriptor: Ribonuclease P protein component 4, ZINC ION
Authors:Kakuta, Y, Ishimatsu, I, Numata, T, Kimura, K, Yao, M, Tanaka, I, Kimura, M.
Deposit date:2005-03-29
Release date:2005-11-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
7F88
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Crystal structure of GH19 chitinase lacking the third loop structure
Descriptor: Chitinase A
Authors:Ohnuma, T, Numata, T.
Deposit date:2021-07-01
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A conserved loop structure of GH19 chitinases assists the enzyme function from behind the core-functional region.
Glycobiology, 32, 2022
6JMS
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BU of 6jms by Molmil
CJP38, a beta-1,3-glucanase and allergen of Cryptomeria japonica pollen
Descriptor: 1,2-ETHANEDIOL, Pollen allergen CJP38
Authors:Takashima, T, Numata, T, Fukamizo, T, Ohnuma, T.
Deposit date:2019-03-13
Release date:2020-05-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:CJP38, a beta-1,3-glucanase and allergen of Cryptomeria japonica pollen
To Be Published
3X1L
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BU of 3x1l by Molmil
Crystal Structure of the CRISPR-Cas RNA Silencing Cmr Complex Bound to a Target Analog
Descriptor: CRISPR system Cmr subunit Cmr2, CRISPR system Cmr subunit Cmr3, CRISPR system Cmr subunit Cmr5, ...
Authors:Osawa, T, Numata, T.
Deposit date:2014-11-20
Release date:2015-05-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.096 Å)
Cite:Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog.
Mol.Cell, 58, 2015
1UAX
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BU of 1uax by Molmil
Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
Descriptor: Ribonuclease HII
Authors:Hata, T, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2003-03-24
Release date:2004-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
To be published
2CZW
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BU of 2czw by Molmil
Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P
Descriptor: 50S ribosomal protein L7Ae
Authors:Fukuhara, H, Kifusa, M, Watanabe, M, Terada, A, Honda, T, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2005-07-19
Release date:2006-04-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 343, 2006
1UCD
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BU of 1ucd by Molmil
Crystal structure of Ribonuclease MC1 from bitter gourd seeds complexed with 5'-UMP
Descriptor: Ribonuclease MC, URACIL, URIDINE-5'-MONOPHOSPHATE
Authors:Suzuki, A, Numata, T, Yao, M, Kimura, M, Tanaka, I.
Deposit date:2003-04-10
Release date:2004-05-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of RNase MC1 from bitter gourd seeds in complex with 5'UMP
To be published
1UCC
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BU of 1ucc by Molmil
Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 3'-UMP.
Descriptor: 3'-URIDINEMONOPHOSPHATE, Ribonuclease MC
Authors:Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M.
Deposit date:2003-04-10
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
1V9H
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BU of 1v9h by Molmil
Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
Descriptor: Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
Authors:Kimura, K, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2004-01-26
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
1V77
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Crystal structure of the PH1877 protein
Descriptor: hypothetical protein PH1877
Authors:Takagi, H, Numata, T, Kakuta, Y, Kimura, M.
Deposit date:2003-12-12
Release date:2004-08-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 319, 2004
1UCA
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BU of 1uca by Molmil
Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 2'-UMP
Descriptor: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, Ribonuclease MC
Authors:Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M.
Deposit date:2003-04-10
Release date:2003-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
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数据于2024-07-17公开中

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