4MTP
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![BU of 4mtp by Molmil](/molmil-images/mine/4mtp) | RdRp from Japanesese Encephalitis Virus | Descriptor: | RNA dependent RNA polymerase, ZINC ION | Authors: | Surana, P, Nair, D.T. | Deposit date: | 2013-09-20 | Release date: | 2013-12-25 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (3.65 Å) | Cite: | RNA-dependent RNA polymerase of Japanese encephalitis virus binds the initiator nucleotide GTP to form a mechanistically important pre-initiation state. Nucleic Acids Res., 42, 2014
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4Q43
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![BU of 4q43 by Molmil](/molmil-images/mine/4q43) | Polymerase-damaged DNA complex | Descriptor: | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*T*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(*TP*CP*TP*(RDG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ... | Authors: | Kottur, J, Sharma, A, Nair, D.T. | Deposit date: | 2014-04-13 | Release date: | 2015-05-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic Structure, 23, 2015
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4Q45
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![BU of 4q45 by Molmil](/molmil-images/mine/4q45) | DNA Polymerase- damaged DNA complex | Descriptor: | 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*TP*CP*TP*A*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(*TP*CP*TP*AP*GP*GP*(RDG)P*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ... | Authors: | Kottur, J, Sharma, A, Nair, D.T. | Deposit date: | 2014-04-13 | Release date: | 2015-05-06 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.176 Å) | Cite: | Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic Structure, 23, 2015
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5YJS
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![BU of 5yjs by Molmil](/molmil-images/mine/5yjs) | Structure of vicilin from Capsicum annuum | Descriptor: | 2-HYDROXYBENZOIC ACID, CHLORIDE ION, COPPER (I) ION, ... | Authors: | Shikhi, M, Nair, D.T, Salunke, D.M. | Deposit date: | 2017-10-11 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.16 Å) | Cite: | Structure-guided identification of function: role ofCapsicum annuumvicilin during oxidative stress. Biochem. J., 475, 2018
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5YUR
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![BU of 5yur by Molmil](/molmil-images/mine/5yur) | DNA polymerase IV - DNA ternary complex 1 | Descriptor: | DNA polymerase IV, DTN, SODIUM ION, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-08-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.035 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YUY
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![BU of 5yuy by Molmil](/molmil-images/mine/5yuy) | DNA polymerase IV - DNA ternary complex 9 | Descriptor: | DIPHOSPHATE, DNA polymerase IV, DTN, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-10-17 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.74 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YUT
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![BU of 5yut by Molmil](/molmil-images/mine/5yut) | DNA polymerase IV - DNA ternary complex 3 | Descriptor: | DNA polymerase IV, DTN, MAGNESIUM ION, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-09-05 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YUZ
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![BU of 5yuz by Molmil](/molmil-images/mine/5yuz) | DNA polymerase IV - DNA ternary complex 11 | Descriptor: | DIPHOSPHATE, DNA polymerase IV, DTN1, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-11-14 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction. Nucleic Acids Res., 46, 2018
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5YYE
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![BU of 5yye by Molmil](/molmil-images/mine/5yye) | DNA polymerase IV - ternary complex 16 | Descriptor: | 5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine, DNA polymerase IV, DTN2, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-12-08 | Release date: | 2018-09-05 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.325 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YUS
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![BU of 5yus by Molmil](/molmil-images/mine/5yus) | DNA polymerase IV - DNA ternary complex 2 | Descriptor: | DNA polymerase IV, DTN, MAGNESIUM ION, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-11-07 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YUV
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![BU of 5yuv by Molmil](/molmil-images/mine/5yuv) | DNA polymerase IV - DNA ternary complex 5 | Descriptor: | DNA polymerase IV, DTN1, DTN2, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-10-03 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.06 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YV3
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![BU of 5yv3 by Molmil](/molmil-images/mine/5yv3) | DNA polymerase IV - DNA ternary complex 7 | Descriptor: | DIPHOSPHATE, DNA polymerase IV, DTN1, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-11-07 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.03 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YUU
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![BU of 5yuu by Molmil](/molmil-images/mine/5yuu) | DNA polymerase IV - DNA ternary complex 4 | Descriptor: | DNA polymerase IV, DTN1, DTN2, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2019-01-02 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.892 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YUX
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![BU of 5yux by Molmil](/molmil-images/mine/5yux) | DNA polymerase IV - DNA ternary complex 8 | Descriptor: | DIPHOSPHATE, DNA polymerase IV, DTN1, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-12-19 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.04 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YV2
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![BU of 5yv2 by Molmil](/molmil-images/mine/5yv2) | DNA polymerase IV - DNA ternary complex 14 | Descriptor: | DNA polymerase IV, DTN1, DTN2, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-09-05 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YYD
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![BU of 5yyd by Molmil](/molmil-images/mine/5yyd) | DNA polymerase IV - ternary complex 15 | Descriptor: | 5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine, DNA polymerase IV, DTN2, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-12-08 | Release date: | 2018-09-05 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YUW
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![BU of 5yuw by Molmil](/molmil-images/mine/5yuw) | DNA polymerase IV - DNA ternary complex 6 | Descriptor: | DNA polymerase IV, DTN1, DTN2C, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-11-07 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.124 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YV1
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![BU of 5yv1 by Molmil](/molmil-images/mine/5yv1) | DNA polymerase IV - DNA ternary complex 13 | Descriptor: | DIPHOSPHATE, DNA polymerase IV, DTN1, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-09-05 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction Nucleic Acids Res., 46, 2018
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5YV0
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![BU of 5yv0 by Molmil](/molmil-images/mine/5yv0) | DNA polymerase IV - DNA ternary complex 12 | Descriptor: | DIPHOSPHATE, DNA polymerase IV, DTN1, ... | Authors: | Kottur, J, Nair, D.T. | Deposit date: | 2017-11-23 | Release date: | 2018-11-14 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction. Nucleic Acids Res., 46, 2018
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5ZLV
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![BU of 5zlv by Molmil](/molmil-images/mine/5zlv) | |
4EGY
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![BU of 4egy by Molmil](/molmil-images/mine/4egy) | Crystal Structure of AraR(DBD) in complex with operator ORA1 | Descriptor: | 5'-D(*AP*AP*AP*AP*TP*TP*GP*TP*TP*CP*GP*TP*AP*CP*AP*AP*AP*TP*AP*TP*T)-3', 5'-D(*TP*AP*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*AP*AP*CP*AP*AP*TP*TP*T)-3', ACETATE ION, ... | Authors: | Jain, D, Nair, D.T. | Deposit date: | 2012-04-02 | Release date: | 2013-02-06 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.301 Å) | Cite: | Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators. Nucleic Acids Res., 41, 2013
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4EGZ
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![BU of 4egz by Molmil](/molmil-images/mine/4egz) | Crystal Structure of AraR(DBD) in complex with operator ORR3 | Descriptor: | 5'-D(*AP*AP*AP*TP*TP*TP*GP*TP*CP*CP*GP*TP*AP*TP*AP*CP*AP*TP*TP*TP*T)-3', 5'-D(*TP*AP*AP*AP*AP*TP*GP*TP*AP*TP*AP*CP*GP*GP*AP*CP*AP*AP*AP*TP*T)-3', ACETATE ION, ... | Authors: | Jain, D, Nair, D.T. | Deposit date: | 2012-04-02 | Release date: | 2013-02-06 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators. Nucleic Acids Res., 41, 2013
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4HDH
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![BU of 4hdh by Molmil](/molmil-images/mine/4hdh) | Crystal Structure of viral RdRp in complex with ATP | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, Polyprotein, ZINC ION | Authors: | Surana, P, Nair, D.T. | Deposit date: | 2012-10-02 | Release date: | 2013-12-25 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.28 Å) | Cite: | RNA-dependent RNA polymerase of Japanese encephalitis virus binds the initiator nucleotide GTP to form a mechanistically important pre-initiation state. Nucleic Acids Res., 42, 2014
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4HDG
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![BU of 4hdg by Molmil](/molmil-images/mine/4hdg) | Crystal Structure of viral RdRp in complex with GTP | Descriptor: | GUANOSINE-5'-TRIPHOSPHATE, Polyprotein, ZINC ION | Authors: | Surana, P, Nair, D.T. | Deposit date: | 2012-10-02 | Release date: | 2013-12-25 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.38 Å) | Cite: | RNA-dependent RNA polymerase of Japanese encephalitis virus binds the initiator nucleotide GTP to form a mechanistically important pre-initiation state. Nucleic Acids Res., 42, 2014
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3NCV
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![BU of 3ncv by Molmil](/molmil-images/mine/3ncv) | NgoL | Descriptor: | DNA mismatch repair protein mutL | Authors: | Namadurai, S, Jain, D, Nair, D.T. | Deposit date: | 2010-06-05 | Release date: | 2010-12-08 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | The C-terminal domain of the MutL homolog from Neisseria gonorrhoeae forms an inverted homodimer Plos One, 5, 2010
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