Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 28 件
6LS8
DownloadVisualize
BU of 6ls8 by Molmil
The monomeric structure of G80A/H81A/H82A myoglobin
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-01-17
公開日2020-05-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin.
Chem Asian J, 15, 2020
6LTM
DownloadVisualize
BU of 6ltm by Molmil
The dimeric structure of G80A/H81A/H82A myoglobin
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-01-22
公開日2020-05-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin.
Chem Asian J, 15, 2020
6LTL
DownloadVisualize
BU of 6ltl by Molmil
The dimeric structure of G80A myoglobin
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Suda, A, Kobayashi, H, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-01-22
公開日2020-05-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Thermodynamic Control of Domain Swapping by Modulating the Helical Propensity in the Hinge Region of Myoglobin.
Chem Asian J, 15, 2020
3VM9
DownloadVisualize
BU of 3vm9 by Molmil
Dimeric horse myoglobin
分子名称: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Osuka, H, Yamada, T, Uni, T, Shomura, Y, Imai, K, Higuchi, Y, Hirota, S.
登録日2011-12-09
公開日2012-09-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Structural and oxygen binding properties of dimeric horse myoglobin
Dalton Trans, 41, 2012
7DGN
DownloadVisualize
BU of 7dgn by Molmil
The Co-bound dimeric structure of K79H/G80A/H81A myoglobin
分子名称: COBALT (II) ION, Myoglobin, OXYGEN ATOM, ...
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGJ
DownloadVisualize
BU of 7dgj by Molmil
The dimeric structure of K78H/G80A/H82A myoglobin
分子名称: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGM
DownloadVisualize
BU of 7dgm by Molmil
The dimeric structure of K79H/G80A/H81A myoglobin
分子名称: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGL
DownloadVisualize
BU of 7dgl by Molmil
The Ni-bound dimeric structure of K78H/G80A/H82A myoglobin
分子名称: Myoglobin, NICKEL (II) ION, OXYGEN ATOM, ...
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
7DGO
DownloadVisualize
BU of 7dgo by Molmil
The Zn-bound dimeric structure of K79H/G80A/H81A myoglobin
分子名称: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
3X39
DownloadVisualize
BU of 3x39 by Molmil
Domain-swapped dimer of Pseudomonas aeruginosa cytochrome c551
分子名称: Cytochrome c-551, HEME C
著者Nagao, S, Ueda, M, Osuka, H, Komori, H, Kamikubo, H, Kataoka, M, Higuchi, Y, Hirota, S.
登録日2015-01-16
公開日2015-04-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Domain-Swapped Dimer of Pseudomonas aeruginosa Cytochrome c551: Structural Insights into Domain Swapping of Cytochrome c Family Proteins
Plos One, 10, 2015
7DGK
DownloadVisualize
BU of 7dgk by Molmil
The Co-bound dimeric structure of K78H/G80A/H82A myoglobin
分子名称: COBALT (II) ION, Myoglobin, OXYGEN ATOM, ...
著者Nagao, S, Idomoto, A, Shibata, N, Higuchi, Y, Hirota, S.
登録日2020-11-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Rational design of metal-binding sites in domain-swapped myoglobin dimers.
J.Inorg.Biochem., 217, 2021
5GYR
DownloadVisualize
BU of 5gyr by Molmil
Tetrameric Allochromatium vinosum cytochrome c'
分子名称: Cytochrome c', HEME C
著者Yamanaka, M, Hoshizumi, M, Nagao, S, Nakayama, R, Shibata, N, Higuchi, Y, Hirota, S.
登録日2016-09-23
公開日2017-02-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers
Protein Sci., 26, 2017
4D7Y
DownloadVisualize
BU of 4d7y by Molmil
Crystal structure of mouse C1QL1 globular domain
分子名称: C1Q-RELATED FACTOR, CADMIUM ION, CHLORIDE ION, ...
著者Kakegawa, W, Mitakidis, N, Miura, E, Abe, M, Matsuda, K, Takeo, Y, Kohda, K, Motohashi, J, Takahashi, A, Nagao, S, Muramatsu, S, Watanabe, M, Sakimura, K, Aricescu, A.R, Yuzaki, M.
登録日2014-12-01
公開日2015-01-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Anterograde C1Ql1 Signaling is Required in Order to Determine and Maintain a Single-Winner Climbing Fiber in the Mouse Cerebellum
Neuron, 85, 2015
5AUR
DownloadVisualize
BU of 5aur by Molmil
Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at N-terminal region
分子名称: Cytochrome c-552, HEME C, IODIDE ION
著者Ren, C, Nagao, S, Yamanaka, M, Kamikubo, H, Komori, H, Shomura, Y, Higuchi, Y, Hirota, S.
登録日2015-06-08
公開日2015-10-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
4ZID
DownloadVisualize
BU of 4zid by Molmil
Dimeric Hydrogenobacter thermophilus cytochrome c552 obtained from Escherichia coli
分子名称: Cytochrome c-552, HEME C
著者Hayashi, Y, Yamanaka, M, Nagao, S, Komori, H, Higuchi, Y, Hirota, S.
登録日2015-04-28
公開日2016-02-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells
Sci Rep, 6, 2016
5AWI
DownloadVisualize
BU of 5awi by Molmil
Domain-swapped cytochrome cb562 dimer
分子名称: HEME C, SULFATE ION, Soluble cytochrome b562, ...
著者Miyamoto, T, Kuribayashi, M, Nagao, S, Shomura, Y, Higuchi, Y, Hirota, S.
登録日2015-07-03
公開日2015-10-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Domain-swapped cytochrome cb562 dimer and its nanocage encapsulating a Zn-SO4 cluster in the internal cavity
Chem Sci, 2015
5AUS
DownloadVisualize
BU of 5aus by Molmil
Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region
分子名称: Cytochrome c-552, HEME C
著者Ren, C, Nagao, S, Yamanaka, M, Komori, H, Shomura, Y, Higuchi, Y, Hirota, S.
登録日2015-06-08
公開日2015-10-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
6K7C
DownloadVisualize
BU of 6k7c by Molmil
Dimeric Shewanella violacea cytochrome c5
分子名称: HEME C, NITRATE ION, Soluble cytochrome cA
著者Yang, H, Yamanaka, M, Nagao, S, Yasuhara, K, Shibata, N, Higuchi, Y, Hirota, S.
登録日2019-06-07
公開日2019-09-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
5XED
DownloadVisualize
BU of 5xed by Molmil
Heterodimer constructed from M61A PA cyt c551-HT cyt c552 and HT cyt c552-PA cyt c551 chimeric proteins
分子名称: Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C
著者Zhang, M, Nakanishi, T, Yamanaka, M, Nagao, S, Yanagisawa, S, Shomura, Y, Shibata, N, Ogura, T, Higuchi, Y, Hirota, S.
登録日2017-04-04
公開日2017-08-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
5XEC
DownloadVisualize
BU of 5xec by Molmil
Heterodimer constructed from PA cyt c551-HT cyt c552 and HT cyt c552-PA cyt c551 chimeric proteins
分子名称: Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C
著者Zhang, M, Nakanishi, T, Yamanaka, M, Nagao, S, Yanagisawa, S, Shomura, Y, Shibata, N, Ogura, T, Higuchi, Y, Hirota, S.
登録日2017-04-04
公開日2017-08-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.
Chembiochem, 18, 2017
6L1V
DownloadVisualize
BU of 6l1v by Molmil
Domain-swapped Alcaligenes xylosoxidans azurin dimer
分子名称: Azurin-1, COPPER (II) ION
著者Cahyono, R.N, Yamanaka, M, Nagao, S, Shibata, N, Higuchi, Y, Hirota, S.
登録日2019-09-30
公開日2020-02-05
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献3D domain swapping of azurin from Alcaligenes xylosoxidans.
Metallomics, 12, 2020
5Z25
DownloadVisualize
BU of 5z25 by Molmil
Trimeric Alpha-Helix-Inserted Circular Permutant of Cytochrome c555
分子名称: Cytochrome c552, HEME C, TETRAETHYLENE GLYCOL
著者Oda, A, Nagao, S, Yamanaka, M, Ueda, I, Shibata, N, Higuchi, Y, Hirota, S.
登録日2017-12-28
公開日2018-03-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an alpha-Helix-Inserted Circular Permutant of Cytochrome c555.
Chem Asian J, 13, 2018
3WC8
DownloadVisualize
BU of 3wc8 by Molmil
Dimeric horse cytochrome c obtained by refolding with desalting method
分子名称: Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者Parui, P.P, Deshpande, M.S, Nagao, S, Kamikubo, H, Komori, H, Higuchi, Y, Kataoka, M, Hirota, S.
登録日2013-05-25
公開日2013-12-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Formation of Oligomeric Cytochrome c during Folding by Intermolecular Hydrophobic Interaction between N- and C-Terminal alpha-Helices
Biochemistry, 52, 2013
3WUI
DownloadVisualize
BU of 3wui by Molmil
Dimeric horse cytochrome c formed by refolding from molten globule state
分子名称: Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者Deshpande, M.S, Parui, P.P, Kamikubo, H, Yamanaka, M, Nagao, S, Komori, H, Kataoka, M, Higuchi, Y, Hirota, S.
登録日2014-04-25
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer.
Biochemistry, 53, 2014
3VYM
DownloadVisualize
BU of 3vym by Molmil
Dimeric Hydrogenobacter thermophilus cytochrome c552
分子名称: Cytochrome c-552, HEME C
著者Hayashi, Y, Nagao, S, Osuka, H, Komori, H, Higuchi, Y, Hirota, S.
登録日2012-09-28
公開日2012-11-07
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Domain Swapping of the Heme and N-Terminal alpha-Helix in Hydrogenobacter thermophilus Cytochrome c(552) Dimer
Biochemistry, 51, 2012

 

12>

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon