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PDB: 209 results

5D85
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BU of 5d85 by Molmil
Staphyloferrin B precursor biosynthetic enzyme SbnA bound to aminoacrylate intermediate
Descriptor: 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID, CITRATE ANION, GLYCEROL, ...
Authors:Kobylarz, M.J, Grigg, J.C, Liu, Y, Lee, M.S.F, Heinrichs, D.E, Murphy, M.E.P.
Deposit date:2015-08-15
Release date:2016-02-03
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis.
Biochemistry, 55, 2016
2ITF
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BU of 2itf by Molmil
Crystal structure IsdA NEAT domain from Staphylococcus aureus with heme bound
Descriptor: Iron-regulated surface determinant protein A, PROTOPORPHYRIN IX CONTAINING FE
Authors:Grigg, J.C, Vermeiren, C.L, Heinrichs, D.E, Murphy, M.E.
Deposit date:2006-10-19
Release date:2006-12-26
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Haem recognition by a Staphylococcus aureus NEAT domain.
Mol.Microbiol., 63, 2007
2ITE
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BU of 2ite by Molmil
Crystal structure of the IsdA NEAT domain from Staphylococcus aureus
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Iron-regulated surface determinant protein A
Authors:Grigg, J.C, Vermeiren, C.L, Heinrichs, D.E, Murphy, M.E.
Deposit date:2006-10-19
Release date:2006-12-26
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Haem recognition by a Staphylococcus aureus NEAT domain.
Mol.Microbiol., 63, 2007
3E2C
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BU of 3e2c by Molmil
Escherichia coli Bacterioferritin Mutant E128R/E135R
Descriptor: 1,2-ETHANEDIOL, Bacterioferritin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Wong, S.G, Tom-Yew, S.A.L, Lewin, A, Le Brun, N.E, Moore, G.R, Murphy, M.E.P, Mauk, A.G.
Deposit date:2008-08-05
Release date:2009-05-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Mechanistic Studies of a Stabilized Subunit Dimer Variant of Escherichia coli Bacterioferritin Identify Residues Required for Core Formation.
J.Biol.Chem., 284, 2009
5D2R
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BU of 5d2r by Molmil
Inhibitor Bound Cell Shape Determinant Protein Csd4 from Helicobacter pylori
Descriptor: (2R,6R)-2-{[(R)-[(3R)-3-(acetylamino)-3-carboxypropyl](hydroxy)phosphoryl]methyl}-6-aminoheptanedioic acid, Conserved hypothetical secreted protein, IODIDE ION, ...
Authors:Chan, A.C, Murphy, M.E.
Deposit date:2015-08-06
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Bacterial Cell Shape-Determining Inhibitor.
Acs Chem.Biol., 11, 2016
4R5J
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BU of 4r5j by Molmil
Crystal structure of the DnaK C-terminus (Dnak-SBD-A)
Descriptor: CALCIUM ION, Chaperone protein DnaK, PHOSPHATE ION
Authors:Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
Deposit date:2014-08-21
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.361 Å)
Cite:Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
4R5L
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BU of 4r5l by Molmil
Crystal structure of the DnaK C-terminus (Dnak-SBD-C)
Descriptor: CALCIUM ION, Chaperone protein DnaK, PHOSPHATE ION, ...
Authors:Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
Deposit date:2014-08-21
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9701 Å)
Cite:Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
3EIX
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BU of 3eix by Molmil
Crystal structure of selenomethionine labelled Staphylococcus aureus lipoprotein, HtsA
Descriptor: CHLORIDE ION, HtsA protein
Authors:Grigg, J.C, Murphy, M.E.P.
Deposit date:2008-09-17
Release date:2009-05-26
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Characterization of staphyloferrin A biosynthetic and transport mutants in Staphylococcus aureus.
Mol.Microbiol., 72, 2009
3EIW
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BU of 3eiw by Molmil
Crystal structure of Staphylococcus aureus lipoprotein, HtsA
Descriptor: CHLORIDE ION, HtsA protein
Authors:Grigg, J.C, Murphy, M.E.P.
Deposit date:2008-09-17
Release date:2009-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Characterization of staphyloferrin A biosynthetic and transport mutants in Staphylococcus aureus.
Mol.Microbiol., 72, 2009
8G64
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BU of 8g64 by Molmil
Heme-bound flavodoxin FldH from Fusobacterium nucleatum
Descriptor: FLAVIN MONONUCLEOTIDE, Flavodoxin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Chan, A.C, Wolthers, K.R, Murphy, M.E.
Deposit date:2023-02-14
Release date:2023-08-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A new member of the flavodoxin superfamily from Fusobacterium nucleatum that functions in heme trafficking and reduction of anaerobilin.
J.Biol.Chem., 299, 2023
4R5G
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BU of 4r5g by Molmil
Crystal structure of the DnaK C-terminus with the inhibitor PET-16
Descriptor: Chaperone protein DnaK, triphenyl(phenylethynyl)phosphonium
Authors:Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
Deposit date:2014-08-21
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.4501 Å)
Cite:Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
4R5I
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BU of 4r5i by Molmil
Crystal structure of the DnaK C-terminus with the substrate peptide NRLLLTG
Descriptor: Chaperone protein DnaK, HSP70/DnaK Substrate Peptide: NRLLLTG, PHOSPHATE ION, ...
Authors:Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
Deposit date:2014-08-21
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9702 Å)
Cite:Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
8GKD
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BU of 8gkd by Molmil
Crystal structure of the peptidoglycan O-acetylesterase Ape1 (amino acids 41-392) from Campylobacter jejuni
Descriptor: ACETATE ION, SGNH hydrolase-type esterase domain-containing protein
Authors:Lin, C.S, Murphy, M.E.
Deposit date:2023-03-17
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of the CBM35 domain in assisting catalysis by Ape1, a Campylobacter jejuni O-acetyl esterase
To be published
8GLD
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BU of 8gld by Molmil
Crystal structure of the peptidoglycan O-acetylesterase Ape1 (amino acids 22-392) from Campylobacter jejuni
Descriptor: ACETATE ION, SGNH hydrolase-type esterase domain-containing protein
Authors:Lin, C.S, Murphy, M.E.
Deposit date:2023-03-22
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanism of the CBM35 domain in assisting catalysis by Ape1, a Campylobacter jejuni O-acetyl esterase
To be published
5VMM
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BU of 5vmm by Molmil
Staphylococcus aureus IsdB bound to human hemoglobin
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, Iron-regulated cell wall-anchored protein, ...
Authors:Bowden, C.F, Chan, A.C, Murphy, M.E.
Deposit date:2017-04-27
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure-function analyses reveal key features in Staphylococcus aureus IsdB-associated unfolding of the heme-binding pocket of human hemoglobin.
J. Biol. Chem., 293, 2018
8T4C
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BU of 8t4c by Molmil
Membrane-associated thioredoxin oxidoreductase FetE from Campylobacter jejuni
Descriptor: GLYCEROL, SULFATE ION, Thioredoxin oxidoreductase
Authors:Chan, A.C, Murphy, M.E.
Deposit date:2023-06-09
Release date:2023-08-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dissecting components of the Campylobacter jejuni fetMP-fetABCDEF gene cluster in iron scavenging.
Biorxiv, 2023
4TV6
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BU of 4tv6 by Molmil
Crystal Structure of Citrate Synthase Variant SbnG E151Q
Descriptor: 2-dehydro-3-deoxyglucarate aldolase, OXALOACETATE ION
Authors:Kobylarz, M.J, Grigg, J.C, Murphy, M.E.P.
Deposit date:2014-06-26
Release date:2014-10-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:SbnG, a Citrate Synthase in Staphylococcus aureus: A NEW FOLD ON AN OLD ENZYME.
J.Biol.Chem., 289, 2014
4TV5
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BU of 4tv5 by Molmil
Crystal Structure of Citrate Synthase SbnG
Descriptor: 2-dehydro-3-deoxyglucarate aldolase, CALCIUM ION
Authors:Kobylarz, M.J, Grigg, J.C, Murphy, M.E.P.
Deposit date:2014-06-25
Release date:2014-10-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:SbnG, a Citrate Synthase in Staphylococcus aureus: A NEW FOLD ON AN OLD ENZYME.
J.Biol.Chem., 289, 2014
5VN5
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BU of 5vn5 by Molmil
Crystal structure of LigY from Sphingobium sp. strain SYK-6
Descriptor: 2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl meta-cleavage compound hydrolase, CHLORIDE ION, ZINC ION
Authors:Kuatsjah, E, Chan, A.C.K, Kobylarz, M.J, Murphy, M.E.P, Eltis, L.D.
Deposit date:2017-04-28
Release date:2017-09-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The bacterialmeta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the alpha / beta-hydrolase superfamily.
J. Biol. Chem., 292, 2017
4U3G
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BU of 4u3g by Molmil
Crystal structure of Escherichia coli bacterioferritin mutant D132F
Descriptor: Bacterioferritin, SULFATE ION
Authors:Wong, S.G, Grigg, J.C, Le Brun, N.E, Moore, G.R, Murphy, M.E.P, Mauk, A.G.
Deposit date:2014-07-21
Release date:2014-12-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The B-type Channel Is a Major Route for Iron Entry into the Ferroxidase Center and Central Cavity of Bacterioferritin.
J.Biol.Chem., 290, 2015
1VFR
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BU of 1vfr by Molmil
THE MAJOR NAD(P)H:FMN OXIDOREDUCTASE FROM VIBRIO FISCHERI
Descriptor: FLAVIN MONONUCLEOTIDE, NAD(P)H:FMN OXIDOREDUCTASE
Authors:Koike, H, Sasaki, H, Kobori, T, Zenno, S, Saigo, K, Murphy, M.E.P, Adman, E.T, Tanokura, M.
Deposit date:1998-01-09
Release date:1999-02-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.8 A crystal structure of the major NAD(P)H:FMN oxidoreductase of a bioluminescent bacterium, Vibrio fischeri: overall structure, cofactor and substrate-analog binding, and comparison with related flavoproteins.
J.Mol.Biol., 280, 1998
7JU2
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BU of 7ju2 by Molmil
Crystal structure of the monomeric ETV6 PNT domain
Descriptor: FORMIC ACID, Transcription factor ETV6
Authors:Gerak, C.A.N, Kolesnikov, M, Murphy, M.E.P, McIntosh, L.P.
Deposit date:2020-08-19
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85002184 Å)
Cite:Biophysical characterization of the ETV6 PNT domain polymerization interfaces.
J.Biol.Chem., 296, 2021
5YTL
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BU of 5ytl by Molmil
Crystal structure of Geobacillus thermodenitrificans copper-containing nitrite reductase determined with an anaerobically manipulated crystal
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, ...
Authors:Fukuda, Y, Matsusaki, T, Tse, K.M, Mizohata, E, Murphy, M.E.P, Inoue, T.
Deposit date:2017-11-19
Release date:2018-08-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans.
Acta Crystallogr D Struct Biol, 74, 2018
8D27
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BU of 8d27 by Molmil
Arginase Domain of Ornithine Decarboxylase/Arginase from Fusobacterium nucleatum
Descriptor: Arginase
Authors:Chan, A.C, Kolesnikov, M, Murphy, M.E.
Deposit date:2022-05-27
Release date:2022-07-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Sequence Divergence in the Arginase Domain of Ornithine Decarboxylase/Arginase in Fusobacteriacea Leads to Loss of Function in Oral Associated Species.
Biochemistry, 61, 2022
5IXG
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BU of 5ixg by Molmil
Crystal Structure of Burkholderia cenocepacia BcnB
Descriptor: (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, YceI
Authors:Loutet, S.A, Murphy, M.E.P.
Deposit date:2016-03-23
Release date:2017-03-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance.
MBio, 8, 2017

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数据于2024-07-24公开中

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