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PDB: 209 件
6E6I
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BU of 6e6i by Molmil
Crystal structure of 4-methyl HOPDA bound to LigY from Sphingobium sp. strain SYK-6
分子名称: (1Z,3E)-5-carboxy-3-methyl-5-oxo-1-phenylpenta-1,3-dien-1-olate, 2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl meta-cleavage compound hydrolase, ZINC ION
著者Kuatsjah, E, Chan, A.C, Hurst, T.E, Snieckus, V, Murphy, M.E, Eltis, L.D.
登録日2018-07-24
公開日2019-01-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Metal- and Serine-Dependent Meta-Cleavage Product Hydrolases Utilize Similar Nucleophile-Activation Strategies
Acs Catalysis, 8, 2018
5IXH
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BU of 5ixh by Molmil
Crystal Structure of Burkholderia cenocepacia BcnA
分子名称: (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION, ...
著者Loutet, S.A, Murphy, M.E.P.
登録日2016-03-23
公開日2017-03-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance.
MBio, 8, 2017
4WCM
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BU of 4wcm by Molmil
Crystal Structure of Cell Shape Determinant protein Csd4 Gln46His variant from Helicobacter pylori
分子名称: 2,6-DIAMINOPIMELIC ACID, Conserved hypothetical secreted protein, IODIDE ION, ...
著者Chan, A.C, Murphy, M.E.
登録日2014-09-05
公開日2014-12-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4.
J.Biol.Chem., 290, 2015
4WCL
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BU of 4wcl by Molmil
Crystal Structure of product bound Cell Shape Determinant protein Csd4 from Helicobacter pylori
分子名称: 2,6-DIAMINOPIMELIC ACID, Conserved hypothetical secreted protein, IODIDE ION, ...
著者Chan, A.C, Murphy, M.E.
登録日2014-09-05
公開日2014-12-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4.
J.Biol.Chem., 290, 2015
4WCN
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BU of 4wcn by Molmil
Crystal Structure of Tripeptide bound Cell Shape Determinant Csd4 protein from Helicobacter pylori
分子名称: Conserved hypothetical secreted protein, IODIDE ION, N-acetyl-L-alanyl-N-[(1S,5R)-5-amino-1,5-dicarboxypentyl]-D-glutamine, ...
著者Chan, A.C, Murphy, M.E.
登録日2014-09-05
公開日2014-12-24
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4.
J.Biol.Chem., 290, 2015
4WCK
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BU of 4wck by Molmil
Crystal Structure of apo Cell Shape Determinant protein Csd4 from Helicobacter pylori
分子名称: 2,6-DIAMINOPIMELIC ACID, Conserved hypothetical secreted protein, IODIDE ION
著者Chan, A.C, Murphy, M.E.
登録日2014-09-05
公開日2014-12-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4.
J.Biol.Chem., 290, 2015
5D84
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BU of 5d84 by Molmil
Staphyloferrin B precursor biosynthetic enzyme SbnA bound to PLP
分子名称: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Probable siderophore biosynthesis protein SbnA
著者Grigg, J.C, Kobylarz, M.J, Liu, Y, Lee, M.S.F, Heinrichs, D.E, Murphy, M.E.P.
登録日2015-08-15
公開日2016-02-03
最終更新日2020-01-08
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis.
Biochemistry, 55, 2016
6WEE
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BU of 6wee by Molmil
Copper-bound M88I variant of Campylobacter jejuni P19
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, COPPER (II) ION, GLYCEROL, ...
著者Chan, A.C, Murphy, M.E.
登録日2020-04-02
公開日2021-02-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A copper site is required for iron transport by the periplasmic proteins P19 and FetP.
Metallomics, 12, 2020
6WEF
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BU of 6wef by Molmil
Copper-bound D92H variant of Campylobacter jejuni P19
分子名称: COPPER (II) ION, GLYCEROL, SULFATE ION, ...
著者Chan, A.C, Murphy, M.E.
登録日2020-04-02
公開日2021-02-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献A copper site is required for iron transport by the periplasmic proteins P19 and FetP.
Metallomics, 12, 2020
6XJ7
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BU of 6xj7 by Molmil
Crystal structure of the helical cell shape determining protein Pgp2 (K307A mutant) from Campylobacter jejuni
分子名称: Pgp2
著者Lin, C.S, Chan, A.C, Murphy, M.E.
登録日2020-06-23
公開日2021-03-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Peptidoglycan binding by a pocket on the accessory NTF2-domain of Pgp2 directs helical cell shape of Campylobacter jejuni.
J.Biol.Chem., 296, 2021
6XM9
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BU of 6xm9 by Molmil
Crystal structure of vanillin bound to Co-LSD4 from Sphingobium sp. strain SYK-6
分子名称: 4-hydroxy-3-methoxybenzaldehyde, ACETATE ION, COBALT (II) ION, ...
著者Kuatsjah, E, Chan, A.C, Katahira, R, Beckham, G.T, Murphy, M.E, Eltis, L.D.
登録日2020-06-29
公開日2021-05-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.651 Å)
主引用文献Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6.
J.Biol.Chem., 296, 2021
6XM7
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BU of 6xm7 by Molmil
Crystal structure of DCA-S bound to Co-LSD4 from Sphingobium sp. strain SYK-6
分子名称: (2E)-3-{4-hydroxy-3-[(E)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]-5-methoxyphenyl}prop-2-enoic acid, COBALT (II) ION, DIMETHYL SULFOXIDE, ...
著者Kuatsjah, E, Chan, A.C, Katahira, R, Beckham, G.T, Murphy, M.E, Eltis, L.D.
登録日2020-06-29
公開日2021-05-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6.
J.Biol.Chem., 296, 2021
1ZDQ
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BU of 1zdq by Molmil
Crystal Structure of Met150Gly AfNiR with Methylsulfanyl Methane Bound
分子名称: (METHYLSULFANYL)METHANE, COPPER (II) ION, Copper-containing nitrite reductase
著者Wijma, H.J, MacPherson, I.S, Alexandre, M, Diederix, R.E.M, Canters, G.W, Murphy, M.E.P, Verbeet, M.P.
登録日2005-04-14
公開日2006-03-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A rearranging ligand enables allosteric control of catalytic activity in copper-containing nitrite reductase.
J.Mol.Biol., 358, 2006
8E67
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BU of 8e67 by Molmil
ETV6 H396Y variant bound to DNA containing the sequence GGAT
分子名称: Complementary 15 bp strand, GGAT-containing 15 bp DNA, Transcription factor ETV6
著者Scheu, K, Chan, A.C, Murphy, M.E, McIntosh, L.P.
登録日2022-08-22
公開日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The functional role of histidine within the ETV6 ETS domain
to be published
8E66
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BU of 8e66 by Molmil
ETV6 H396Y variant bound to DNA containing the sequence GGAA
分子名称: CACODYLATE ION, Complementary 15 bp strand, GGAA-containing 15 bp DNA, ...
著者Scheu, K, Chan, A.C, Murphy, M.E, McIntosh, L.P.
登録日2022-08-22
公開日2023-08-30
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The functional role of histidine within the ETV6 ETS domain
to be published
6DAT
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BU of 6dat by Molmil
ETS1 in complex with synthetic SRR mimic
分子名称: Protein C-ets-1, SULFATE ION, serine-rich region (SRR) peptide
著者Perez-Borrajero, C, Okon, M, Lin, C.S, Scheu, K, Murphy, M.E.P, Graves, B.J, McIntosh, L.P.
登録日2018-05-02
公開日2019-01-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.35002637 Å)
主引用文献The Biophysical Basis for Phosphorylation-Enhanced DNA-Binding Autoinhibition of the ETS1 Transcription Factor.
J. Mol. Biol., 431, 2019
1ZDS
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BU of 1zds by Molmil
Crystal Structure of Met150Gly AfNiR with Acetamide Bound
分子名称: ACETAMIDE, COPPER (II) ION, Copper-containing nitrite reductase
著者Wijma, H.J, MacPherson, I.S, Alexandre, M, Diederix, R.E.M, Canters, G.W, Murphy, M.E.P, Verbeet, M.P.
登録日2005-04-14
公開日2006-03-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A rearranging ligand enables allosteric control of catalytic activity in copper-containing nitrite reductase.
J.Mol.Biol., 358, 2006
1J9Q
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BU of 1j9q by Molmil
Crystal structure of nitrite soaked oxidized D98N AFNIR
分子名称: COPPER (II) ION, COPPER-CONTAINING NITRITE REDUCTASE, NITRITE ION
著者Boulanger, M.J, Murphy, M.E.
登録日2001-05-28
公開日2001-06-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Alternate substrate binding modes to two mutant (D98N and H255N) forms of nitrite reductase from Alcaligenes faecalis S-6: structural model of a transient catalytic intermediate
Biochemistry, 40, 2001
1J9S
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BU of 1j9s by Molmil
Crystal structure of nitrite soaked oxidized H255N AFNIR
分子名称: COPPER (II) ION, COPPER-CONTAINING NITRITE REDUCTASE, NITRITE ION
著者Boulanger, M.J, Murphy, M.E.
登録日2001-05-28
公開日2001-06-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Alternate substrate binding modes to two mutant (D98N and H255N) forms of nitrite reductase from Alcaligenes faecalis S-6: structural model of a transient catalytic intermediate
Biochemistry, 40, 2001
1J9T
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BU of 1j9t by Molmil
Crystal structure of nitrite soaked reduced H255N AFNIR
分子名称: COPPER (II) ION, COPPER-CONTAINING NITRITE REDUCTASE, NITRITE ION
著者Boulanger, M.J, Murphy, M.E.
登録日2001-05-28
公開日2001-06-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Alternate substrate binding modes to two mutant (D98N and H255N) forms of nitrite reductase from Alcaligenes faecalis S-6: structural model of a transient catalytic intermediate
Biochemistry, 40, 2001
1J9R
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BU of 1j9r by Molmil
Crystal structure of nitrite soaked reduced D98N AFNIR
分子名称: COPPER (II) ION, COPPER-CONTAINING NITRITE REDUCTASE, NITRITE ION
著者Boulanger, M.J, Murphy, M.E.
登録日2001-05-28
公開日2001-06-06
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Alternate substrate binding modes to two mutant (D98N and H255N) forms of nitrite reductase from Alcaligenes faecalis S-6: structural model of a transient catalytic intermediate
Biochemistry, 40, 2001
1F5V
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BU of 1f5v by Molmil
STRUCTURE AND SITE-DIRECTED MUTAGENESIS OF A FLAVOPROTEIN FROM ESCHERICHIA COLI THAT REDUCES NITROCOMPOUNDS. ALTERATION OF PYRIDINE NUCLEOTIDE BINDING BY A SINGLE AMINO ACID SUBSTITUTION
分子名称: FLAVIN MONONUCLEOTIDE, OXYGEN-INSENSITIVE NADPH NITROREDUCTASE
著者Kobori, T, Sasaki, H, Lee, W.C, Zenno, S, Saigo, K, Murphy, M.E.P, Tanokura, M.
登録日2000-06-17
公開日2001-02-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure and site-directed mutagenesis of a flavoprotein from Escherichia coli that reduces nitrocompounds: alteration of pyridine nucleotide binding by a single amino acid substitution.
J.Biol.Chem., 276, 2001
6DA1
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BU of 6da1 by Molmil
ETS1 in complex with synthetic SRR mimic
分子名称: Protein C-ets-1, SULFATE ION, serine-rich region (SRR) peptide
著者Perez-Borrajero, C, Okon, M, Lin, C.S, Scheu, K, Murphy, M.E.P, Graves, B.J, McIntosh, L.P.
登録日2018-05-01
公開日2019-01-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.000127 Å)
主引用文献The Biophysical Basis for Phosphorylation-Enhanced DNA-Binding Autoinhibition of the ETS1 Transcription Factor.
J. Mol. Biol., 431, 2019
6XJ6
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BU of 6xj6 by Molmil
Crystal structure of the helical cell shape determining protein Pgp2 from Campylobacter jejuni
分子名称: Pgp2
著者Lin, C.S, Chan, A.C, Murphy, M.E.
登録日2020-06-23
公開日2021-03-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.497 Å)
主引用文献Peptidoglycan binding by a pocket on the accessory NTF2-domain of Pgp2 directs helical cell shape of Campylobacter jejuni.
J.Biol.Chem., 296, 2021
2GDR
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BU of 2gdr by Molmil
Crystal structure of a bacterial glutathione transferase
分子名称: GLUTATHIONE, glutathione S-transferase
著者Tocheva, E.I, Fortin, P.D, Eltis, L.D, Murphy, M.E.P.
登録日2006-03-16
公開日2006-08-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of Ternary Complexes of BphK, a Bacterial Glutathione S-Transferase That Reductively Dechlorinates Polychlorinated Biphenyl Metabolites.
J.Biol.Chem., 281, 2006

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