Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 209 件

5D85
DownloadVisualize
BU of 5d85 by Molmil
Staphyloferrin B precursor biosynthetic enzyme SbnA bound to aminoacrylate intermediate
分子名称: 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID, CITRATE ANION, GLYCEROL, ...
著者Kobylarz, M.J, Grigg, J.C, Liu, Y, Lee, M.S.F, Heinrichs, D.E, Murphy, M.E.P.
登録日2015-08-15
公開日2016-02-03
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis.
Biochemistry, 55, 2016
2ITF
DownloadVisualize
BU of 2itf by Molmil
Crystal structure IsdA NEAT domain from Staphylococcus aureus with heme bound
分子名称: Iron-regulated surface determinant protein A, PROTOPORPHYRIN IX CONTAINING FE
著者Grigg, J.C, Vermeiren, C.L, Heinrichs, D.E, Murphy, M.E.
登録日2006-10-19
公開日2006-12-26
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Haem recognition by a Staphylococcus aureus NEAT domain.
Mol.Microbiol., 63, 2007
2ITE
DownloadVisualize
BU of 2ite by Molmil
Crystal structure of the IsdA NEAT domain from Staphylococcus aureus
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Iron-regulated surface determinant protein A
著者Grigg, J.C, Vermeiren, C.L, Heinrichs, D.E, Murphy, M.E.
登録日2006-10-19
公開日2006-12-26
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Haem recognition by a Staphylococcus aureus NEAT domain.
Mol.Microbiol., 63, 2007
3E2C
DownloadVisualize
BU of 3e2c by Molmil
Escherichia coli Bacterioferritin Mutant E128R/E135R
分子名称: 1,2-ETHANEDIOL, Bacterioferritin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Wong, S.G, Tom-Yew, S.A.L, Lewin, A, Le Brun, N.E, Moore, G.R, Murphy, M.E.P, Mauk, A.G.
登録日2008-08-05
公開日2009-05-12
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and Mechanistic Studies of a Stabilized Subunit Dimer Variant of Escherichia coli Bacterioferritin Identify Residues Required for Core Formation.
J.Biol.Chem., 284, 2009
5D2R
DownloadVisualize
BU of 5d2r by Molmil
Inhibitor Bound Cell Shape Determinant Protein Csd4 from Helicobacter pylori
分子名称: (2R,6R)-2-{[(R)-[(3R)-3-(acetylamino)-3-carboxypropyl](hydroxy)phosphoryl]methyl}-6-aminoheptanedioic acid, Conserved hypothetical secreted protein, IODIDE ION, ...
著者Chan, A.C, Murphy, M.E.
登録日2015-08-06
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A Bacterial Cell Shape-Determining Inhibitor.
Acs Chem.Biol., 11, 2016
4R5J
DownloadVisualize
BU of 4r5j by Molmil
Crystal structure of the DnaK C-terminus (Dnak-SBD-A)
分子名称: CALCIUM ION, Chaperone protein DnaK, PHOSPHATE ION
著者Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
登録日2014-08-21
公開日2014-09-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.361 Å)
主引用文献Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
4R5L
DownloadVisualize
BU of 4r5l by Molmil
Crystal structure of the DnaK C-terminus (Dnak-SBD-C)
分子名称: CALCIUM ION, Chaperone protein DnaK, PHOSPHATE ION, ...
著者Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
登録日2014-08-21
公開日2014-09-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.9701 Å)
主引用文献Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
3EIX
DownloadVisualize
BU of 3eix by Molmil
Crystal structure of selenomethionine labelled Staphylococcus aureus lipoprotein, HtsA
分子名称: CHLORIDE ION, HtsA protein
著者Grigg, J.C, Murphy, M.E.P.
登録日2008-09-17
公開日2009-05-26
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Characterization of staphyloferrin A biosynthetic and transport mutants in Staphylococcus aureus.
Mol.Microbiol., 72, 2009
3EIW
DownloadVisualize
BU of 3eiw by Molmil
Crystal structure of Staphylococcus aureus lipoprotein, HtsA
分子名称: CHLORIDE ION, HtsA protein
著者Grigg, J.C, Murphy, M.E.P.
登録日2008-09-17
公開日2009-05-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Characterization of staphyloferrin A biosynthetic and transport mutants in Staphylococcus aureus.
Mol.Microbiol., 72, 2009
8G64
DownloadVisualize
BU of 8g64 by Molmil
Heme-bound flavodoxin FldH from Fusobacterium nucleatum
分子名称: FLAVIN MONONUCLEOTIDE, Flavodoxin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Chan, A.C, Wolthers, K.R, Murphy, M.E.
登録日2023-02-14
公開日2023-08-09
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A new member of the flavodoxin superfamily from Fusobacterium nucleatum that functions in heme trafficking and reduction of anaerobilin.
J.Biol.Chem., 299, 2023
4R5G
DownloadVisualize
BU of 4r5g by Molmil
Crystal structure of the DnaK C-terminus with the inhibitor PET-16
分子名称: Chaperone protein DnaK, triphenyl(phenylethynyl)phosphonium
著者Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
登録日2014-08-21
公開日2014-09-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.4501 Å)
主引用文献Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
4R5I
DownloadVisualize
BU of 4r5i by Molmil
Crystal structure of the DnaK C-terminus with the substrate peptide NRLLLTG
分子名称: Chaperone protein DnaK, HSP70/DnaK Substrate Peptide: NRLLLTG, PHOSPHATE ION, ...
著者Leu, J.I, Zhang, P, Murphy, M.E, Marmorstein, R, George, D.L.
登録日2014-08-21
公開日2014-09-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9702 Å)
主引用文献Structural Basis for the Inhibition of HSP70 and DnaK Chaperones by Small-Molecule Targeting of a C-Terminal Allosteric Pocket.
Acs Chem.Biol., 9, 2014
8GKD
DownloadVisualize
BU of 8gkd by Molmil
Crystal structure of the peptidoglycan O-acetylesterase Ape1 (amino acids 41-392) from Campylobacter jejuni
分子名称: ACETATE ION, SGNH hydrolase-type esterase domain-containing protein
著者Lin, C.S, Murphy, M.E.
登録日2023-03-17
公開日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mechanism of the CBM35 domain in assisting catalysis by Ape1, a Campylobacter jejuni O-acetyl esterase
To be published
8GLD
DownloadVisualize
BU of 8gld by Molmil
Crystal structure of the peptidoglycan O-acetylesterase Ape1 (amino acids 22-392) from Campylobacter jejuni
分子名称: ACETATE ION, SGNH hydrolase-type esterase domain-containing protein
著者Lin, C.S, Murphy, M.E.
登録日2023-03-22
公開日2024-03-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Mechanism of the CBM35 domain in assisting catalysis by Ape1, a Campylobacter jejuni O-acetyl esterase
To be published
5VMM
DownloadVisualize
BU of 5vmm by Molmil
Staphylococcus aureus IsdB bound to human hemoglobin
分子名称: Hemoglobin subunit alpha, Hemoglobin subunit beta, Iron-regulated cell wall-anchored protein, ...
著者Bowden, C.F, Chan, A.C, Murphy, M.E.
登録日2017-04-27
公開日2017-11-15
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structure-function analyses reveal key features in Staphylococcus aureus IsdB-associated unfolding of the heme-binding pocket of human hemoglobin.
J. Biol. Chem., 293, 2018
8T4C
DownloadVisualize
BU of 8t4c by Molmil
Membrane-associated thioredoxin oxidoreductase FetE from Campylobacter jejuni
分子名称: GLYCEROL, SULFATE ION, Thioredoxin oxidoreductase
著者Chan, A.C, Murphy, M.E.
登録日2023-06-09
公開日2023-08-09
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Dissecting components of the Campylobacter jejuni fetMP-fetABCDEF gene cluster in iron scavenging.
Biorxiv, 2023
4TV6
DownloadVisualize
BU of 4tv6 by Molmil
Crystal Structure of Citrate Synthase Variant SbnG E151Q
分子名称: 2-dehydro-3-deoxyglucarate aldolase, OXALOACETATE ION
著者Kobylarz, M.J, Grigg, J.C, Murphy, M.E.P.
登録日2014-06-26
公開日2014-10-29
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献SbnG, a Citrate Synthase in Staphylococcus aureus: A NEW FOLD ON AN OLD ENZYME.
J.Biol.Chem., 289, 2014
4TV5
DownloadVisualize
BU of 4tv5 by Molmil
Crystal Structure of Citrate Synthase SbnG
分子名称: 2-dehydro-3-deoxyglucarate aldolase, CALCIUM ION
著者Kobylarz, M.J, Grigg, J.C, Murphy, M.E.P.
登録日2014-06-25
公開日2014-10-29
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献SbnG, a Citrate Synthase in Staphylococcus aureus: A NEW FOLD ON AN OLD ENZYME.
J.Biol.Chem., 289, 2014
5VN5
DownloadVisualize
BU of 5vn5 by Molmil
Crystal structure of LigY from Sphingobium sp. strain SYK-6
分子名称: 2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl meta-cleavage compound hydrolase, CHLORIDE ION, ZINC ION
著者Kuatsjah, E, Chan, A.C.K, Kobylarz, M.J, Murphy, M.E.P, Eltis, L.D.
登録日2017-04-28
公開日2017-09-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The bacterialmeta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the alpha / beta-hydrolase superfamily.
J. Biol. Chem., 292, 2017
4U3G
DownloadVisualize
BU of 4u3g by Molmil
Crystal structure of Escherichia coli bacterioferritin mutant D132F
分子名称: Bacterioferritin, SULFATE ION
著者Wong, S.G, Grigg, J.C, Le Brun, N.E, Moore, G.R, Murphy, M.E.P, Mauk, A.G.
登録日2014-07-21
公開日2014-12-24
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The B-type Channel Is a Major Route for Iron Entry into the Ferroxidase Center and Central Cavity of Bacterioferritin.
J.Biol.Chem., 290, 2015
1VFR
DownloadVisualize
BU of 1vfr by Molmil
THE MAJOR NAD(P)H:FMN OXIDOREDUCTASE FROM VIBRIO FISCHERI
分子名称: FLAVIN MONONUCLEOTIDE, NAD(P)H:FMN OXIDOREDUCTASE
著者Koike, H, Sasaki, H, Kobori, T, Zenno, S, Saigo, K, Murphy, M.E.P, Adman, E.T, Tanokura, M.
登録日1998-01-09
公開日1999-02-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献1.8 A crystal structure of the major NAD(P)H:FMN oxidoreductase of a bioluminescent bacterium, Vibrio fischeri: overall structure, cofactor and substrate-analog binding, and comparison with related flavoproteins.
J.Mol.Biol., 280, 1998
7JU2
DownloadVisualize
BU of 7ju2 by Molmil
Crystal structure of the monomeric ETV6 PNT domain
分子名称: FORMIC ACID, Transcription factor ETV6
著者Gerak, C.A.N, Kolesnikov, M, Murphy, M.E.P, McIntosh, L.P.
登録日2020-08-19
公開日2021-01-20
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.85002184 Å)
主引用文献Biophysical characterization of the ETV6 PNT domain polymerization interfaces.
J.Biol.Chem., 296, 2021
5YTL
DownloadVisualize
BU of 5ytl by Molmil
Crystal structure of Geobacillus thermodenitrificans copper-containing nitrite reductase determined with an anaerobically manipulated crystal
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, ...
著者Fukuda, Y, Matsusaki, T, Tse, K.M, Mizohata, E, Murphy, M.E.P, Inoue, T.
登録日2017-11-19
公開日2018-08-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.401 Å)
主引用文献Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans.
Acta Crystallogr D Struct Biol, 74, 2018
8D27
DownloadVisualize
BU of 8d27 by Molmil
Arginase Domain of Ornithine Decarboxylase/Arginase from Fusobacterium nucleatum
分子名称: Arginase
著者Chan, A.C, Kolesnikov, M, Murphy, M.E.
登録日2022-05-27
公開日2022-07-06
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Sequence Divergence in the Arginase Domain of Ornithine Decarboxylase/Arginase in Fusobacteriacea Leads to Loss of Function in Oral Associated Species.
Biochemistry, 61, 2022
5IXG
DownloadVisualize
BU of 5ixg by Molmil
Crystal Structure of Burkholderia cenocepacia BcnB
分子名称: (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, YceI
著者Loutet, S.A, Murphy, M.E.P.
登録日2016-03-23
公開日2017-03-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance.
MBio, 8, 2017

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon