1VEP
| Crystal Structure Analysis of Triple (T47M/Y164E/T328N)/maltose of Bacillus cereus Beta-Amylase at pH 6.5 | Descriptor: | Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Hirata, A, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2004-04-03 | Release date: | 2005-05-24 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.06 Å) | Cite: | Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type Biochemistry, 43, 2004
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1VD5
| Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCINE, ... | Authors: | Itoh, T, Akao, S, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2004-03-18 | Release date: | 2004-07-13 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution J.Biol.Chem., 279, 2004
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1VEM
| Crystal Structure Analysis of Bacillus Cereus Beta-Amylase at the optimum pH (6.5) | Descriptor: | Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Hirata, A, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2004-04-03 | Release date: | 2005-05-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type Biochemistry, 43, 2004
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1VEN
| Crystal Structure Analysis of Y164E/maltose of Bacilus cereus Beta-amylase at pH 4.6 | Descriptor: | Beta-amylase, CALCIUM ION, alpha-D-glucopyranose | Authors: | Hirata, A, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2004-04-03 | Release date: | 2005-05-24 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.02 Å) | Cite: | Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type Biochemistry, 43, 2004
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1WW6
| Agrocybe cylindracea galectin complexed with lactose | Descriptor: | beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin | Authors: | Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F. | Deposit date: | 2005-01-03 | Release date: | 2005-08-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate J.Mol.Biol., 351, 2005
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1WW4
| Agrocybe cylindracea galectin complexed with NeuAca2-3lactose | Descriptor: | N-acetyl-alpha-neuraminic acid-(2-3)-alpha-D-galactopyranose-(1-4)-alpha-D-glucopyranose, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin | Authors: | Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F. | Deposit date: | 2004-12-31 | Release date: | 2005-08-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate J.Mol.Biol., 351, 2005
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1WDS
| The role of an inner loop in the catalytic mechanism of soybean beta-amylase | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose, ... | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2004-05-17 | Release date: | 2005-04-05 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.64 Å) | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism. Biochemistry, 44, 2005
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1X1J
| Crystal Structure of Xanthan Lyase (N194A) with a Substrate. | Descriptor: | (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID), CALCIUM ION, xanthan lyase | Authors: | Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2005-04-04 | Release date: | 2005-07-19 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism J.Mol.Biol., 350, 2005
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1WDP
| The role of an inner loop in the catalytic mechanism of soybean beta-amylase | Descriptor: | Beta-amylase, SULFATE ION | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2004-05-17 | Release date: | 2005-04-05 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.27 Å) | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism. Biochemistry, 44, 2005
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1WOQ
| Crystal Structure of Inorganic Polyphosphate/ATP-Glucomannokinase From Arthrobacter sp. strain KM At 1.8 A Resolution | Descriptor: | Inorganic polyphosphate/ATP-glucomannokinase, PHOSPHATE ION, beta-D-glucopyranose | Authors: | Mukai, T, Kawai, S, Mori, S, Mikami, B, Murata, K. | Deposit date: | 2004-08-24 | Release date: | 2004-09-28 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of Bacterial Inorganic Polyphosphate/ATP-glucomannokinase: INSIGHTS INTO KINASE EVOLUTION J.Biol.Chem., 279, 2004
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1WW5
| Agrocybe cylindracea galectin complexed with 3'-sulfonyl lactose | Descriptor: | 3-O-sulfo-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin | Authors: | Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F. | Deposit date: | 2005-01-03 | Release date: | 2005-08-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate J.Mol.Biol., 351, 2005
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1WDR
| The role of an inner loop in the catalytic mechanism of soybean beta-amylase | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose, ... | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2004-05-17 | Release date: | 2005-04-05 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism. Biochemistry, 44, 2005
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1WDQ
| The role of an inner loop in the catalytic mechanism of soybean beta-amylase | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | Deposit date: | 2004-05-17 | Release date: | 2005-04-05 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.28 Å) | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism. Biochemistry, 44, 2005
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1X1H
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1WW7
| Agrocybe cylindracea galectin (Ligand-free) | Descriptor: | SULFATE ION, galectin | Authors: | Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F. | Deposit date: | 2005-01-03 | Release date: | 2005-08-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate J.Mol.Biol., 351, 2005
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1X1I
| Crystal Structure of Xanthan Lyase (N194A) Complexed with a Product | Descriptor: | (4AR,6R,7S,8R,8AS)-HEXAHYDRO-6,7,8-TRIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID, xanthan lyase | Authors: | Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2005-04-04 | Release date: | 2005-07-19 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism J.Mol.Biol., 350, 2005
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2Z42
| Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 | Descriptor: | Alginate lyase, SULFATE ION | Authors: | Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2007-06-12 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1 To be published
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2ZAB
| Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG) | Descriptor: | Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-02 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.66 Å) | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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2Z9W
| Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxal | Descriptor: | 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, Aspartate aminotransferase, GLYCEROL, ... | Authors: | Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T. | Deposit date: | 2007-09-26 | Release date: | 2007-11-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem., 283, 2008
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2ZAC
| Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG) | Descriptor: | Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-02 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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2ZUY
| Crystal structure of exotype rhamnogalacturonan lyase YesX | Descriptor: | CALCIUM ION, YesX protein | Authors: | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2008-10-28 | Release date: | 2009-02-03 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem., 284, 2009
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2Z72
| New Structure Of Cold-Active Protein Tyrosine Phosphatase At 1.1 Angstrom | Descriptor: | Protein-tyrosine-phosphatase, ZINC ION | Authors: | Tsuruta, H, Mikami, B, Yamamoto, C, Yamagata, H. | Deposit date: | 2007-08-10 | Release date: | 2008-07-29 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | The role of group bulkiness in the catalytic activity of psychrophile cold-active protein tyrosine phosphatase Febs J., 275, 2008
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2Z9X
| Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxyl-L-alanine | Descriptor: | 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, ALANINE, Aspartate aminotransferase, ... | Authors: | Yoshikane, Y, Yokochi, N, Yamasaki, M, Mizutani, K, Ohnishi, K, Mikami, B, Hayashi, H, Yagi, T. | Deposit date: | 2007-09-26 | Release date: | 2007-11-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem., 283, 2008
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2ZBL
| Functional annotation of Salmonella enterica yihS-encoded protein | Descriptor: | Putative isomerase, beta-D-mannopyranose | Authors: | Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-24 | Release date: | 2008-02-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase J.Mol.Biol., 377, 2008
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2ZA9
| Crystal Structure of Alginate lyase A1-II' N141C/N199C | Descriptor: | Alginate lyase, SULFATE ION | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-02 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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