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PDB: 87 results

1EWJ
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BU of 1ewj by Molmil
CRYSTAL STRUCTURE OF BLEOMYCIN-BINDING PROTEIN COMPLEXED WITH BLEOMYCIN
Descriptor: BLEOMYCIN A2, BLEOMYCIN RESISTANCE DETERMINANT
Authors:Maruyama, M, Kumagai, T, Matoba, Y, Hata, Y, Sugiyama, M.
Deposit date:2000-04-26
Release date:2001-04-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the transposon Tn5-carried bleomycin resistance determinant uncomplexed and complexed with bleomycin.
J.Biol.Chem., 276, 2001
6LDO
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BU of 6ldo by Molmil
Crystal structure of cystathionine gamma-lyase from Lactobacillus plantarum complexed with L-serine
Descriptor: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine, Cystathionine gamma-lyase, PHOSPHATE ION
Authors:Oda, K, Matoba, Y.
Deposit date:2019-11-22
Release date:2020-10-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Catalytic specificity of the Lactobacillus plantarum cystathionine gamma-lyase presumed by the crystallographic analysis.
Sci Rep, 10, 2020
1QTO
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BU of 1qto by Molmil
1.5 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS
Descriptor: BLEOMYCIN-BINDING PROTEIN
Authors:Kawano, Y, Kumagai, T, Muta, K, Matoba, Y, Davies, J, Sugiyama, M.
Deposit date:1999-06-28
Release date:2000-06-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The 1.5 A crystal structure of a bleomycin resistance determinant from bleomycin-producing Streptomyces verticillus.
J.Mol.Biol., 295, 2000
6LE4
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BU of 6le4 by Molmil
Crystal structure of cystathionine gamma-lyase from Lactobacillus plantarum complexed with cystathionine
Descriptor: (2~{S})-4-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]butanoic acid, Cystathionine gamma-lyase, PHOSPHATE ION
Authors:Oda, K, Matoba, Y.
Deposit date:2019-11-24
Release date:2020-10-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Catalytic specificity of the Lactobacillus plantarum cystathionine gamma-lyase presumed by the crystallographic analysis.
Sci Rep, 10, 2020
1ECS
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BU of 1ecs by Molmil
THE 1.7 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT ENCODED ON THE TRANSPOSON TN5
Descriptor: BLEOMYCIN RESISTANCE PROTEIN, CALCIUM ION, TETRAETHYLENE GLYCOL
Authors:Maruyama, M, Matoba, Y, Kumagai, T, Sugiyama, M.
Deposit date:2000-01-25
Release date:2001-05-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of the transposon Tn5-carried bleomycin resistance determinant uncomplexed and complexed with bleomycin.
J.Biol.Chem., 276, 2001
8WKO
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BU of 8wko by Molmil
Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the closed form
Descriptor: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE, ...
Authors:Oda, K, Matoba, Y.
Deposit date:2023-09-28
Release date:2024-02-14
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
8WKR
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BU of 8wkr by Molmil
Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the open form
Descriptor: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE
Authors:Oda, K, Matoba, Y.
Deposit date:2023-09-28
Release date:2024-02-14
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
6LUG
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BU of 6lug by Molmil
Crystal structure of N(omega)-hydroxy-L-arginine hydrolase
Descriptor: MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
Authors:Oda, K, Matoba, Y.
Deposit date:2020-01-28
Release date:2020-06-17
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of an Nomega-hydroxy-L-arginine hydrolase found in the D-cycloserine biosynthetic pathway.
Acta Crystallogr D Struct Biol, 76, 2020
3VVL
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BU of 3vvl by Molmil
Crystal structure of L-serine-O-acetyltransferase found in D-cycloserine biosynthetic pathway
Descriptor: Homoserine O-acetyltransferase
Authors:Oda, K, Matoba, Y, Kumagai, T, Noda, M, Sugiyama, M.
Deposit date:2012-07-26
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway
J.Bacteriol., 195, 2013
6LUH
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BU of 6luh by Molmil
High resolution structure of N(omega)-hydroxy-L-arginine hydrolase
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
Authors:Oda, K, Matoba, Y.
Deposit date:2020-01-28
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of an Nomega-hydroxy-L-arginine hydrolase found in the D-cycloserine biosynthetic pathway.
Acta Crystallogr D Struct Biol, 76, 2020
1VFH
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BU of 1vfh by Molmil
Crystal structure of alanine racemase from D-cycloserine producing Streptomyces lavendulae
Descriptor: PYRIDOXAL-5'-PHOSPHATE, alanine racemase
Authors:Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
Deposit date:2004-04-13
Release date:2004-09-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1JIE
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BU of 1jie by Molmil
Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with metal-free bleomycin
Descriptor: BLEOMYCIN A2, bleomycin-binding protein
Authors:Sugiyama, M, Kumagai, T, Hayashida, M, Maruyama, M, Matoba, Y.
Deposit date:2001-07-02
Release date:2002-02-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus.
J.Biol.Chem., 277, 2002
1JIF
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BU of 1jif by Molmil
Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with copper(II)-bleomycin
Descriptor: BLEOMYCIN A2, CHLORIDE ION, COPPER (II) ION, ...
Authors:Sugiyama, M, Kumagai, T, Hayashida, M, Maruyama, M, Matoba, Y.
Deposit date:2001-07-02
Release date:2002-02-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus.
J.Biol.Chem., 277, 2002
1VFS
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BU of 1vfs by Molmil
Crystal structure of D-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae
Descriptor: CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, alanine racemase
Authors:Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
Deposit date:2004-04-19
Release date:2004-09-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
7EUN
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BU of 7eun by Molmil
Crystal structure of N(omega)-hydroxy-L-arginine hydrolase in complex with ABH
Descriptor: 2(S)-AMINO-6-BORONOHEXANOIC ACID, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Oda, K, Matoba, Y.
Deposit date:2021-05-18
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor.
Protein Sci., 31, 2022
7VDY
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BU of 7vdy by Molmil
Crystal structure of O-ureidoserine racemase
Descriptor: O-ureido-serine racemase, SULFATE ION
Authors:Oda, K, Matoba, Y.
Deposit date:2021-09-07
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Crystal structure of O-ureidoserine racemase found in the d-cycloserine biosynthetic pathway.
Proteins, 90, 2022
8IUS
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BU of 8ius by Molmil
Crystal structure of Manganese-free N(omega)-hydroxy-L-arginine hydrolase with reduced Cys86
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
Authors:Oda, K, Matoba, Y.
Deposit date:2023-03-25
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8IUU
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BU of 8iuu by Molmil
Crystal structure of Manganese-rebound N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
Authors:Oda, K, Matoba, Y.
Deposit date:2023-03-25
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8IUV
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BU of 8iuv by Molmil
Crystal structure of Manganese-free N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
Authors:Oda, K, Matoba, Y.
Deposit date:2023-03-25
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8IUT
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BU of 8iut by Molmil
Crystal structure of Copper-bound N(omega)-hydroxy-L-arginine hydrolase with reduced Cys86
Descriptor: COPPER (I) ION, COPPER (II) ION, MAGNESIUM ION, ...
Authors:Oda, K, Matoba, Y.
Deposit date:2023-03-25
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8IUW
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BU of 8iuw by Molmil
Crystal structure of Copper-bound N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86
Descriptor: COPPER (I) ION, COPPER (II) ION, MAGNESIUM ION, ...
Authors:Oda, K, Matoba, Y.
Deposit date:2023-03-25
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
7CIT
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BU of 7cit by Molmil
Crystal structure of tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the solution containing Cu(II) and hydroxylamine for 24 h
Descriptor: COPPER (II) ION, HYDROGEN PEROXIDE, MelC, ...
Authors:Oda, K, Matoba, Y.
Deposit date:2020-07-08
Release date:2021-06-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The basicity of an active-site water molecule discriminates between tyrosinase and catechol oxidase activity.
Int.J.Biol.Macromol., 183, 2021
7CIY
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BU of 7ciy by Molmil
Crystal structure of N191G-mutated tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the solution containing Cu(II) and hydroxylamine for 24 h
Descriptor: COPPER (II) ION, HYDROGEN PEROXIDE, MelC, ...
Authors:Oda, K, Matoba, Y.
Deposit date:2020-07-08
Release date:2021-06-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:The basicity of an active-site water molecule discriminates between tyrosinase and catechol oxidase activity.
Int.J.Biol.Macromol., 183, 2021
7EUQ
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BU of 7euq by Molmil
Crystal structure of C86H-Y124N-G126H-H196S mutant of N(omega)-hydroxy-L-arginine hydrolase
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
Authors:Oda, K, Matoba, Y.
Deposit date:2021-05-18
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor.
Protein Sci., 31, 2022
7EUL
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BU of 7eul by Molmil
Crystal structure of C86H-H196S mutant of N(omega)-hydroxy-L-arginine hydrolase
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
Authors:Oda, K, Matoba, Y.
Deposit date:2021-05-18
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor.
Protein Sci., 31, 2022

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數據於2024-07-17公開中

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