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PDB: 87 件
1EWJ
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CRYSTAL STRUCTURE OF BLEOMYCIN-BINDING PROTEIN COMPLEXED WITH BLEOMYCIN
分子名称: BLEOMYCIN A2, BLEOMYCIN RESISTANCE DETERMINANT
著者Maruyama, M, Kumagai, T, Matoba, Y, Hata, Y, Sugiyama, M.
登録日2000-04-26
公開日2001-04-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of the transposon Tn5-carried bleomycin resistance determinant uncomplexed and complexed with bleomycin.
J.Biol.Chem., 276, 2001
6LDO
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Crystal structure of cystathionine gamma-lyase from Lactobacillus plantarum complexed with L-serine
分子名称: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine, Cystathionine gamma-lyase, PHOSPHATE ION
著者Oda, K, Matoba, Y.
登録日2019-11-22
公開日2020-10-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Catalytic specificity of the Lactobacillus plantarum cystathionine gamma-lyase presumed by the crystallographic analysis.
Sci Rep, 10, 2020
1QTO
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1.5 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT FROM BLEOMYCIN-PRODUCING STREPTOMYCES VERTICILLUS
分子名称: BLEOMYCIN-BINDING PROTEIN
著者Kawano, Y, Kumagai, T, Muta, K, Matoba, Y, Davies, J, Sugiyama, M.
登録日1999-06-28
公開日2000-06-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The 1.5 A crystal structure of a bleomycin resistance determinant from bleomycin-producing Streptomyces verticillus.
J.Mol.Biol., 295, 2000
6LE4
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Crystal structure of cystathionine gamma-lyase from Lactobacillus plantarum complexed with cystathionine
分子名称: (2~{S})-4-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]butanoic acid, Cystathionine gamma-lyase, PHOSPHATE ION
著者Oda, K, Matoba, Y.
登録日2019-11-24
公開日2020-10-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Catalytic specificity of the Lactobacillus plantarum cystathionine gamma-lyase presumed by the crystallographic analysis.
Sci Rep, 10, 2020
1ECS
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BU of 1ecs by Molmil
THE 1.7 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT ENCODED ON THE TRANSPOSON TN5
分子名称: BLEOMYCIN RESISTANCE PROTEIN, CALCIUM ION, TETRAETHYLENE GLYCOL
著者Maruyama, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2000-01-25
公開日2001-05-02
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of the transposon Tn5-carried bleomycin resistance determinant uncomplexed and complexed with bleomycin.
J.Biol.Chem., 276, 2001
8WKO
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Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the closed form
分子名称: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE, ...
著者Oda, K, Matoba, Y.
登録日2023-09-28
公開日2024-02-14
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
8WKR
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Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the open form
分子名称: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE
著者Oda, K, Matoba, Y.
登録日2023-09-28
公開日2024-02-14
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
6LUG
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Crystal structure of N(omega)-hydroxy-L-arginine hydrolase
分子名称: MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
著者Oda, K, Matoba, Y.
登録日2020-01-28
公開日2020-06-17
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of an Nomega-hydroxy-L-arginine hydrolase found in the D-cycloserine biosynthetic pathway.
Acta Crystallogr D Struct Biol, 76, 2020
3VVL
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BU of 3vvl by Molmil
Crystal structure of L-serine-O-acetyltransferase found in D-cycloserine biosynthetic pathway
分子名称: Homoserine O-acetyltransferase
著者Oda, K, Matoba, Y, Kumagai, T, Noda, M, Sugiyama, M.
登録日2012-07-26
公開日2013-03-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Crystallographic study to determine the substrate specificity of an L-serine-acetylating enzyme found in the D-cycloserine biosynthetic pathway
J.Bacteriol., 195, 2013
6LUH
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High resolution structure of N(omega)-hydroxy-L-arginine hydrolase
分子名称: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
著者Oda, K, Matoba, Y.
登録日2020-01-28
公開日2020-09-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of an Nomega-hydroxy-L-arginine hydrolase found in the D-cycloserine biosynthetic pathway.
Acta Crystallogr D Struct Biol, 76, 2020
1VFH
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BU of 1vfh by Molmil
Crystal structure of alanine racemase from D-cycloserine producing Streptomyces lavendulae
分子名称: PYRIDOXAL-5'-PHOSPHATE, alanine racemase
著者Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2004-04-13
公開日2004-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
1JIE
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Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with metal-free bleomycin
分子名称: BLEOMYCIN A2, bleomycin-binding protein
著者Sugiyama, M, Kumagai, T, Hayashida, M, Maruyama, M, Matoba, Y.
登録日2001-07-02
公開日2002-02-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus.
J.Biol.Chem., 277, 2002
1JIF
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BU of 1jif by Molmil
Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with copper(II)-bleomycin
分子名称: BLEOMYCIN A2, CHLORIDE ION, COPPER (II) ION, ...
著者Sugiyama, M, Kumagai, T, Hayashida, M, Maruyama, M, Matoba, Y.
登録日2001-07-02
公開日2002-02-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus.
J.Biol.Chem., 277, 2002
1VFS
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BU of 1vfs by Molmil
Crystal structure of D-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae
分子名称: CHLORIDE ION, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, alanine racemase
著者Noda, M, Matoba, Y, Kumagai, T, Sugiyama, M.
登録日2004-04-19
公開日2004-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product.
J.Biol.Chem., 279, 2004
7EUN
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BU of 7eun by Molmil
Crystal structure of N(omega)-hydroxy-L-arginine hydrolase in complex with ABH
分子名称: 2(S)-AMINO-6-BORONOHEXANOIC ACID, MAGNESIUM ION, MANGANESE (II) ION, ...
著者Oda, K, Matoba, Y.
登録日2021-05-18
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor.
Protein Sci., 31, 2022
7VDY
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BU of 7vdy by Molmil
Crystal structure of O-ureidoserine racemase
分子名称: O-ureido-serine racemase, SULFATE ION
著者Oda, K, Matoba, Y.
登録日2021-09-07
公開日2021-12-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Crystal structure of O-ureidoserine racemase found in the d-cycloserine biosynthetic pathway.
Proteins, 90, 2022
8IUS
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BU of 8ius by Molmil
Crystal structure of Manganese-free N(omega)-hydroxy-L-arginine hydrolase with reduced Cys86
分子名称: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
著者Oda, K, Matoba, Y.
登録日2023-03-25
公開日2024-03-27
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8IUU
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Crystal structure of Manganese-rebound N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86
分子名称: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
著者Oda, K, Matoba, Y.
登録日2023-03-25
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.26 Å)
主引用文献Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8IUV
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BU of 8iuv by Molmil
Crystal structure of Manganese-free N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86
分子名称: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
著者Oda, K, Matoba, Y.
登録日2023-03-25
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8IUT
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Crystal structure of Copper-bound N(omega)-hydroxy-L-arginine hydrolase with reduced Cys86
分子名称: COPPER (I) ION, COPPER (II) ION, MAGNESIUM ION, ...
著者Oda, K, Matoba, Y.
登録日2023-03-25
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
8IUW
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Crystal structure of Copper-bound N(omega)-hydroxy-L-arginine hydrolase with oxidized Cys86
分子名称: COPPER (I) ION, COPPER (II) ION, MAGNESIUM ION, ...
著者Oda, K, Matoba, Y.
登録日2023-03-25
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd
To Be Published
7CIT
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BU of 7cit by Molmil
Crystal structure of tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the solution containing Cu(II) and hydroxylamine for 24 h
分子名称: COPPER (II) ION, HYDROGEN PEROXIDE, MelC, ...
著者Oda, K, Matoba, Y.
登録日2020-07-08
公開日2021-06-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The basicity of an active-site water molecule discriminates between tyrosinase and catechol oxidase activity.
Int.J.Biol.Macromol., 183, 2021
7CIY
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BU of 7ciy by Molmil
Crystal structure of N191G-mutated tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the solution containing Cu(II) and hydroxylamine for 24 h
分子名称: COPPER (II) ION, HYDROGEN PEROXIDE, MelC, ...
著者Oda, K, Matoba, Y.
登録日2020-07-08
公開日2021-06-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献The basicity of an active-site water molecule discriminates between tyrosinase and catechol oxidase activity.
Int.J.Biol.Macromol., 183, 2021
7EUQ
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BU of 7euq by Molmil
Crystal structure of C86H-Y124N-G126H-H196S mutant of N(omega)-hydroxy-L-arginine hydrolase
分子名称: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
著者Oda, K, Matoba, Y.
登録日2021-05-18
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor.
Protein Sci., 31, 2022
7EUL
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BU of 7eul by Molmil
Crystal structure of C86H-H196S mutant of N(omega)-hydroxy-L-arginine hydrolase
分子名称: MAGNESIUM ION, MANGANESE (II) ION, N(omega)-hydroxy-L-arginine amidinohydrolase
著者Oda, K, Matoba, Y.
登録日2021-05-18
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Catalytic mechanism of DcsB: Arginase framework used for hydrolyzing its inhibitor.
Protein Sci., 31, 2022

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件を2024-07-17に公開中

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