Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1214 results

6HXE
DownloadVisualize
BU of 6hxe by Molmil
Crystal structure of psychrophilic phosphoglycerate kinase from Pseudomonas TACII18 in complex with 3-phosphoglycerate
Descriptor: 3-PHOSPHOGLYCERIC ACID, Phosphoglycerate kinase
Authors:Mandelman, D, Haser, R, Aghajari, N.
Deposit date:2018-10-17
Release date:2019-06-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural determinants increasing flexibility confer cold adaptation in psychrophilic phosphoglycerate kinase.
Extremophiles, 23, 2019
7PK0
DownloadVisualize
BU of 7pk0 by Molmil
Bovine Glycine N-Acyltransferase complexed with Benzoyl-CoA
Descriptor: ACETATE ION, Glycine N-acyltransferase, benzoyl coenzyme A
Authors:Opperman, D.J, Ebrecht, A.C, Read, R.J.
Deposit date:2021-08-25
Release date:2022-09-07
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of glycine N-acyltransferase clarifies its catalytic mechanism
To Be Published
7PK2
DownloadVisualize
BU of 7pk2 by Molmil
Bovine Glycine N-Acyltransferase
Descriptor: Glycine N-acyltransferase, MALONATE ION
Authors:Opperman, D.J, Ebrecht, A.C, Read, R.J.
Deposit date:2021-08-25
Release date:2022-09-07
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structure of glycine N-acyltransferase clarifies its catalytic mechanism
To Be Published
2GN0
DownloadVisualize
BU of 2gn0 by Molmil
Crystal structure of dimeric biodegradative threonine deaminase (TdcB) from Salmonella typhimurium at 1.7 A resolution (Triclinic form with one complete subunit built in alternate conformation)
Descriptor: SODIUM ION, Threonine dehydratase catabolic
Authors:Simanshu, D.K, Savithri, H.S, Murthy, M.R.
Deposit date:2006-04-09
Release date:2006-11-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of Salmonella typhimurium biodegradative threonine deaminase and its complex with CMP provide structural insights into ligand-induced oligomerization and enzyme activation.
J.Biol.Chem., 281, 2006
6HBE
DownloadVisualize
BU of 6hbe by Molmil
Cu-containing nitrite reductase (NirK) from Thermus scotoductus SA-01
Descriptor: CALCIUM ION, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Opperman, D.J, Ferroni, F.M.
Deposit date:2018-08-10
Release date:2019-01-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:A three-domain copper-nitrite reductase with a unique sensing loop.
Iucrj, 6, 2019
7OLR
DownloadVisualize
BU of 7olr by Molmil
Dioxygenase AsqJ in complex with 2 and alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, 4-Methoxydehydrocyclopeptin, Iron/alpha-ketoglutarate-dependent dioxygenase asqJ, ...
Authors:Auman, D, Mader, S.L, Ecker, F, Dorst, K, Braeuer, A, Widmalm, G, Groll, M, Kaila, V.R.I.
Deposit date:2021-05-20
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Peroxy Intermediate Drives Carbon Bond Activation in the Dioxygenase AsqJ.
J.Am.Chem.Soc., 144, 2022
7OLM
DownloadVisualize
BU of 7olm by Molmil
Dioxygenase AsqJ mutant (V72I) in complex with 2b-O-O and Tris
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-[(S)-dioxidanyl(phenyl)methyl]-4-methyl-2-oxidanyl-1H-1,4-benzodiazepin-5-one, BROMIDE ION, ...
Authors:Auman, D, Mader, S.L, Ecker, F, Dorst, K, Braeuer, A, Widmalm, G, Groll, M, Kaila, V.R.I.
Deposit date:2021-05-20
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Peroxy Intermediate Drives Carbon Bond Activation in the Dioxygenase AsqJ.
J.Am.Chem.Soc., 144, 2022
7OLO
DownloadVisualize
BU of 7olo by Molmil
Dioxygenase AsqJ mutant (V72I) in complex with 2b and glycerol
Descriptor: (3~{Z})-4-methyl-3-(phenylmethylidene)-1~{H}-1,4-benzodiazepine-2,5-dione, BROMIDE ION, CHLORIDE ION, ...
Authors:Auman, D, Mader, S.L, Ecker, F, Dorst, K, Braeuer, A, Widmalm, G, Groll, M, Kaila, V.R.I.
Deposit date:2021-05-20
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Peroxy Intermediate Drives Carbon Bond Activation in the Dioxygenase AsqJ.
J.Am.Chem.Soc., 144, 2022
7OLL
DownloadVisualize
BU of 7oll by Molmil
Dioxygenase AsqJ mutant (V72I) in complex with 2b and Tris
Descriptor: (3~{Z})-4-methyl-3-(phenylmethylidene)-1~{H}-1,4-benzodiazepine-2,5-dione, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BROMIDE ION, ...
Authors:Auman, D, Mader, S.L, Ecker, F, Dorst, K, Braeuer, A, Widmalm, G, Groll, M, Kaila, V.R.I.
Deposit date:2021-05-20
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Peroxy Intermediate Drives Carbon Bond Activation in the Dioxygenase AsqJ.
J.Am.Chem.Soc., 144, 2022
7P6L
DownloadVisualize
BU of 7p6l by Molmil
Heme domain of CYP505A30, a fungal hydroxylase from Myceliophthora thermophila, bound to dodecanoic acid
Descriptor: Bifunctional cytochrome P450/NADPH--P450 reductase, LAURIC ACID, PROTOPORPHYRIN IX CONTAINING FE
Authors:Opperman, D.J, Aschenbrenner, J.C, Tolmie, C, Ebrecht, A.C.
Deposit date:2021-07-16
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structure of the fungal hydroxylase, CYP505A30, and rational transfer of mutation data from CYP102A1 to alter regioselectivity
Catalysis Science And Technology, 11, 2021
3KPE
DownloadVisualize
BU of 3kpe by Molmil
Solution structure of the respiratory syncytial virus (RSV)six-helix bundle complexed with TMC353121, a small-moleucule inhibitor of RSV
Descriptor: 2-[[6-[[[2-(3-hydroxypropyl)-5-methylphenyl]amino]methyl]-2-[[3-(4-morpholinyl)propyl]amino]-1H-benzimidazol-1-yl]methyl]-6-methyl-3-pyridinol, Fusion glycoprotein F0, TETRAETHYLENE GLYCOL
Authors:Roymans, D, De Bondt, H, Arnoult, E, Cummings, M.D, Van Vlijmen, H, Andries, K.
Deposit date:2009-11-16
Release date:2009-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Binding of a potent small-molecule inhibitor of six-helix bundle formation requires interactions with both heptad-repeats of the RSV fusion protein.
Proc.Natl.Acad.Sci.USA, 107, 2010
3IAG
DownloadVisualize
BU of 3iag by Molmil
CSL (RBP-Jk) bound to HES-1 nonconsensus site
Descriptor: 1,2-ETHANEDIOL, 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*AP*CP*AP*CP*GP*AP*T)-3', 5'-D(*TP*TP*AP*TP*CP*GP*TP*GP*TP*GP*AP*AP*AP*GP*A)-3', ...
Authors:Friedmann, D.R, Kovall, R.A.
Deposit date:2009-07-13
Release date:2009-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Thermodynamic and structural insights into CSL-DNA complexes.
Protein Sci., 19, 2010
6T1T
DownloadVisualize
BU of 6t1t by Molmil
Cytochrome P450 reductase in complex with NADPH from Candida tropicalis
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Opperman, D.J, Sewell, B.T.
Deposit date:2019-10-06
Release date:2020-01-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Biochemical and structural insights into the cytochrome P450 reductase from Candida tropicalis.
Sci Rep, 9, 2019
6RM2
DownloadVisualize
BU of 6rm2 by Molmil
Deoxyguanylosuccinate synthase (DgsS) structure with ATP, IMP, Magnesium
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Adenylosuccinate synthetase, INOSINIC ACID, ...
Authors:Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A.
Deposit date:2019-05-04
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Deoxyguanylosuccinate synthase (DgsS) quaternary structure with ATP, IMP, Magnesium at 2.5 Angstrom resolution
To Be Published
6I06
DownloadVisualize
BU of 6i06 by Molmil
Crystal structure of psychrophilic phosphoglycerate kinase from Pseudomonas TACII18
Descriptor: Phosphoglycerate kinase
Authors:Mandelman, D, Haser, R, Aghajari, N.
Deposit date:2018-10-25
Release date:2019-06-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural determinants increasing flexibility confer cold adaptation in psychrophilic phosphoglycerate kinase.
Extremophiles, 23, 2019
6TNH
DownloadVisualize
BU of 6tnh by Molmil
Deoxyguanylosuccinate synthase (DgsS) quaternary structure with AMPPcP, dGMP, Asp, Magnesium at 2.21 Angstrom resolution
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, ASPARTIC ACID, Adenylosuccinate synthetase, ...
Authors:Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A.
Deposit date:2019-12-08
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes.
Science, 372, 2021
2J45
DownloadVisualize
BU of 2j45 by Molmil
Water structure of T. Aquaticus Ffh NG Domain At 1.1A Resolution
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Freymann, D.M, Ramirez, U.D.
Deposit date:2006-08-24
Release date:2006-11-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Analysis of Protein Hydration in Ultra-High Resolution Structures of the Srp Gtpase Ffh
Acta Crystallogr.,Sect.D, 62, 2006
3KV0
DownloadVisualize
BU of 3kv0 by Molmil
Crystal structure of HET-C2: A FUNGAL GLYCOLIPID TRANSFER PROTEIN (GLTP)
Descriptor: HET-C2
Authors:Simanshu, D.K, Kenoth, R, Brown, R.E, Patel, D.J.
Deposit date:2009-11-28
Release date:2010-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural determination and tryptophan fluorescence of heterokaryon incompatibility C2 protein (HET-C2), a fungal glycolipid transfer protein (GLTP), provide novel insights into glycolipid specificity and membrane interaction by the GLTP fold.
J.Biol.Chem., 285, 2010
2J46
DownloadVisualize
BU of 2j46 by Molmil
Water structure of T. Aquaticus Ffh NG Domain At 1.1A Resolution
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Freymann, D.M, Ramirez, U.D.
Deposit date:2006-08-24
Release date:2006-11-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Analysis of Protein Hydration in Ultra-High Resolution Structures of the Srp Gtpase Ffh
Acta Crystallogr.,Sect.D, 62, 2006
1KFG
DownloadVisualize
BU of 1kfg by Molmil
The X-ray Crystal Structure of Cel9G from Clostridium cellulolyticum complexed with a Thio-Oligosaccharide Inhibitor
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-thio-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-4-thio-beta-D-glucopyranose-(1-4)-1-thio-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Mandelman, D, Belaich, A, Belaich, J.-P, Driguez, H, Haser, R.
Deposit date:2001-11-20
Release date:2003-07-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The X-ray crystal structure of the multidomain endoglucanase Cel9G from Clostridium cellulolyticum complexed with natural and synthetic cello-olligosaccharides
J.Bacteriol., 185, 2003
3NSG
DownloadVisualize
BU of 3nsg by Molmil
Crystal Structure of OmpF, an Outer Membrane Protein from Salmonella typhi
Descriptor: CITRATE ANION, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Balasubramaniam, D, Arockiasamy, A, Sharma, A, Krishnaswamy, S.
Deposit date:2010-07-01
Release date:2011-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Asymmetric pore occupancy in crystal structure of OmpF porin from Salmonella typhi
J.Struct.Biol., 178, 2012
4KBS
DownloadVisualize
BU of 4kbs by Molmil
Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 12:0 phosphatidic acid (12:0 PA)
Descriptor: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, 1,2-ETHANEDIOL, Glycolipid transfer protein domain-containing protein 1
Authors:Simanshu, D.K, Brown, R.E, Patel, D.J.
Deposit date:2013-04-23
Release date:2013-07-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Non-vesicular trafficking by a ceramide-1-phosphate transfer protein regulates eicosanoids.
Nature, 500, 2013
2C6H
DownloadVisualize
BU of 2c6h by Molmil
Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)
Descriptor: 4-{[4-(DIMETHYLAMINO)-3-HYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-12-ETHYL-3,5,7,11-TETRAMETHYLOXACYCLODODEC-9-ENE-2,8-DIONE, CYTOCHROME P450 MONOOXYGENASE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Sherman, D.H, Li, S, Yermalitskaya, L.V, Kim, Y, Smith, J.A, Waterman, M.R, Podust, L.M.
Deposit date:2005-11-09
Release date:2006-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The Structural Basis for Substrate Anchoring, Active Site Selectivity, and Product Formation by P450 Pikc from Streptomyces Venezuelae.
J.Biol.Chem., 281, 2006
2GN2
DownloadVisualize
BU of 2gn2 by Molmil
Crystal structure of tetrameric biodegradative threonine deaminase (TdcB) from Salmonella typhimurium in complex with CMP at 2.5A resolution (Hexagonal form)
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, SODIUM ION, Threonine dehydratase catabolic
Authors:Simanshu, D.K, Savithri, H.S, Murthy, M.R.N.
Deposit date:2006-04-09
Release date:2006-11-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of Salmonella typhimurium biodegradative threonine deaminase and its complex with CMP provide structural insights into ligand-induced oligomerization and enzyme activation.
J.Biol.Chem., 281, 2006
8CHX
DownloadVisualize
BU of 8chx by Molmil
Structure and function of LolA from Vibrio cholerae
Descriptor: Outer-membrane lipoprotein carrier protein, ZINC ION
Authors:Jaiman, D, Nagampalli, R, Persson, K.
Deposit date:2023-02-08
Release date:2023-06-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A comparative analysis of lipoprotein transport proteins: LolA and LolB from Vibrio cholerae and LolA from Porphyromonas gingivalis.
Sci Rep, 13, 2023

223166

数据于2024-07-31公开中

PDB statisticsPDBj update infoContact PDBjnumon