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PDB: 86 件
1VVJ
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BU of 1vvj by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-05-24
公開日2014-08-06
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3.440001 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
3GGI
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BU of 3ggi by Molmil
Locating monovalent cations in one turn of G/C rich B-DNA
分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION, THALLIUM (I) ION
著者Maehigashi, T, Moulaei, T, Watkins, D, Komeda, S, Williams, L.D.
登録日2009-02-28
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Locating monovalent cations in one turn of G/C rich B-DNA
To be Published
3FT6
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BU of 3ft6 by Molmil
Crystal Structure of Proflavine in Complex with a DNA hexamer duplex
分子名称: 5'-D(*CP*GP*AP*TP*CP*G)-3', COBALT HEXAMMINE(III), PROFLAVIN
著者Maehigashi, T, Persil, O, Hud, N.V, Williams, L.D.
登録日2009-01-12
公開日2010-02-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Crystal Structure of Proflavine in Complex with a DNA hexamer duplex
To be Published
3GGK
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BU of 3ggk by Molmil
Locating monovalent cations in one turn of G/C rich B-DNA
分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION, RUBIDIUM ION
著者Maehigashi, T, Moulaei, T, Watkins, D, Komeda, S, Williams, L.D.
登録日2009-02-28
公開日2010-03-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.87 Å)
主引用文献Locating monovalent cations in one turn of G/C rich B-DNA
To be Published
1IVZ
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BU of 1ivz by Molmil
Solution structure of the SEA domain from murine hypothetical protein homologous to human mucin 16
分子名称: hypothetical protein 1110008I14RIK
著者Maeda, T, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-04-02
公開日2002-10-02
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16)
J.Biol.Chem., 279, 2004
4L71
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BU of 4l71 by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-06-13
公開日2014-08-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.900001 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4L47
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BU of 4l47 by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-06-07
公開日2014-08-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.220001 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LFZ
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BU of 4lfz by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-06-27
公開日2014-08-06
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (3.92000055 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LEL
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BU of 4lel by Molmil
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-06-25
公開日2014-08-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.90000033 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LNT
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BU of 4lnt by Molmil
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-07-12
公開日2014-08-06
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (2.94 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LSK
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BU of 4lsk by Molmil
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-07-22
公開日2014-08-06
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (3.48000622 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LT8
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BU of 4lt8 by Molmil
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2013-07-23
公開日2014-08-06
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (3.14000177 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4P70
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BU of 4p70 by Molmil
Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Maehigashi, T, Dunkle, J.A, Dunham, C.M.
登録日2014-03-25
公開日2014-08-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.68 Å)
主引用文献Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4Q2U
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BU of 4q2u by Molmil
Crystal structure of the E. coli DinJ-YafQ toxin-antitoxin complex
分子名称: Antitoxin DinJ, SULFATE ION, mRNA interferase YafQ
著者Maehigashi, T, Ruangprasert, A, Dunham, C.M.
登録日2014-04-09
公開日2014-06-11
最終更新日2014-08-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mechanisms of Toxin Inhibition and Transcriptional Repression by Escherichia coli DinJ-YafQ.
J.Biol.Chem., 289, 2014
3U89
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BU of 3u89 by Molmil
Crystal structure of one turn of g/c rich b-dna revisited
分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION
著者Maehigashi, T, Woods, K.K, Moulaei, T, Komeda, S, Williams, L.D.
登録日2011-10-16
公開日2011-11-09
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (0.96 Å)
主引用文献B-DNA structure is intrinsically polymorphic: even at the level of base pair positions.
Nucleic Acids Res., 40, 2012
3UZ0
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BU of 3uz0 by Molmil
Crystal Structure of SpoIIIAH and SpoIIQ Complex
分子名称: SULFATE ION, Stage II sporulation protein Q, Stage III sporulation protein AH
著者Maehigashi, T, Meisner, J, Dunham, C.M.
登録日2011-12-07
公開日2012-03-21
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Structure of the basal components of a bacterial transporter.
Proc.Natl.Acad.Sci.USA, 109, 2012
1WDD
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BU of 1wdd by Molmil
Crystal Structure of Activated Rice Rubisco Complexed with 2-Carboxyarabinitol-1,5-bisphosphate
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
著者Mizohata, E, Matsumura, H, Ueno, T, Ishida, H, Inoue, T, Makino, A, Mae, T, Kai, Y.
登録日2004-05-13
公開日2004-11-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
3AXM
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BU of 3axm by Molmil
Structure of rice Rubisco in complex with 6PG
分子名称: 6-PHOSPHOGLUCONIC ACID, MAGNESIUM ION, Ribulose bisphosphate carboxylase large chain, ...
著者Matsumura, H, Mizohata, E, Ishida, H, Kogami, A, Ueno, T, Makino, A, Inoue, T, Yokota, A, Mae, T, Kai, Y.
登録日2011-04-11
公開日2012-04-11
最終更新日2013-06-05
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
3AXK
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BU of 3axk by Molmil
Structure of rice Rubisco in complex with NADP(H)
分子名称: GLYCEROL, MAGNESIUM ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Matsumura, H, Mizohata, E, Ishida, H, Kogami, A, Ueno, T, Makino, A, Inoue, T, Yokota, A, Mae, T, Kai, Y.
登録日2011-04-11
公開日2012-04-11
最終更新日2013-06-05
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
1LA4
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BU of 1la4 by Molmil
Solution Structure of SGTx1
分子名称: SGTx1
著者Lee, C.W, Roh, S.H, Kim, S, Endoh, H, Kodera, Y, Maeda, T, Swartz, K.J, Kim, J.I.
登録日2002-03-28
公開日2003-11-11
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution Structure and Functional Characterization of SGTx1, a Modifier of Kv2.1 Channel Gating
Biochemistry, 43, 2004
5XZB
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BU of 5xzb by Molmil
Mouse cGAS bound to the inhibitor RU365
分子名称: (3R)-3-[1-(1H-benzimidazol-2-yl)-5-hydroxy-3-methyl-1H-pyrazol-4-yl]-2-benzofuran-1(3H)-one, Cyclic GMP-AMP synthase, DNA (5'-D(*AP*AP*AP*TP*TP*GP*CP*CP*GP*AP*AP*GP*AP*CP*G)-3'), ...
著者Vincent, J, Adura, C, Gao, P, Luz, A, Lama, L, Asano, Y, Okamoto, R, Imaeda, T, Aida, J, Rothamel, K, Gogakos, T, Steinberg, J, Reasoner, S, Aso, K, Tuschl, T, Patel, D.J, Glickman, J.F, Ascano, M.
登録日2017-07-12
公開日2017-08-09
最終更新日2022-10-12
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Small molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice.
Nat Commun, 8, 2017
6NY6
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BU of 6ny6 by Molmil
Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome
分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Pavelich, I.J, Hoffer, E.D, Maehigashi, T, Dunham, C.M.
登録日2019-02-11
公開日2019-08-21
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.74 Å)
主引用文献Monomeric YoeB toxin retains RNase activity but adopts an obligate dimeric form for thermal stability.
Nucleic Acids Res., 47, 2019
2E1X
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BU of 2e1x by Molmil
NMR structure of the HIV-2 nucleocapsid protein
分子名称: Gag-Pol polyprotein (Pr160Gag-Pol), ZINC ION
著者Matsui, T, Kodera, Y, Miyauchi, E, Tanaka, H, Endoh, H, Komatsu, H, Tanaka, T, Kohno, T, Maeda, T.
登録日2006-11-03
公開日2007-06-05
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献Structural role of the secondary active domain of HIV-2 NCp8 in multi-functionality
Biochem.Biophys.Res.Commun., 358, 2007
2EC7
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BU of 2ec7 by Molmil
Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein
分子名称: Gag polyprotein (Pr55Gag), ZINC ION
著者Matsui, T, Kodera, Y, Tanaka, T, Endoh, H, Tanaka, H, Miyauchi, E, Komatsu, H, Kohno, T, Maeda, T.
登録日2007-02-10
公開日2008-02-19
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7
Biochemistry, 48, 2009
4V97
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BU of 4v97 by Molmil
Crystal structure of the bacterial ribosome ram mutation G299A.
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fagan, C.E, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
登録日2012-04-06
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.516 Å)
主引用文献Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state.
Proc.Natl.Acad.Sci.USA, 110, 2013

 

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