Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 件

6EKY
DownloadVisualize
BU of 6eky by Molmil
Direct-evolutioned unspecific peroxygenase from Agrocybe aegerita, in complex with 1-naphthol (II)
分子名称: 1-NAPHTHOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Aromatic peroxygenase, ...
著者Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2017-09-27
公開日2018-12-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase.
Acs Chem.Biol., 13, 2018
5EW6
DownloadVisualize
BU of 5ew6 by Molmil
Structure of ligand binding region of uPARAP at pH 7.4 without calcium
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, C-type mannose receptor 2, ...
著者Yuan, C, Huang, M.
登録日2015-11-20
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Crystal structures of the ligand-binding region of uPARAP: effect of calcium ion binding
Biochem.J., 473, 2016
6EL4
DownloadVisualize
BU of 6el4 by Molmil
Direct-evolutioned unspecific peroxygenase from Agrocybe aegerita, in complex with veratryl alcohol
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Aromatic peroxygenase, CHLORIDE ION, ...
著者Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2017-09-27
公開日2018-12-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Structural Insights into the Substrate Promiscuity of a Laboratory-Evolved Peroxygenase.
Acs Chem.Biol., 13, 2018
1WWH
DownloadVisualize
BU of 1wwh by Molmil
Crystal structure of the MPPN domain of mouse Nup35
分子名称: nucleoporin 35
著者Handa, N, Murayama, K, Kukimoto, M, Hamana, H, Uchikubo, T, Takemoto, C, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-01-05
公開日2005-07-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain
J.Mol.Biol., 363, 2006
5AAU
DownloadVisualize
BU of 5aau by Molmil
Optimization of a novel binding motif to to (E)-3-(3,5-difluoro-4-((1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H- pyrido(3,4-b)indol-1-yl)phenyl)acrylic acid (AZD9496), a potent and orally bioavailable selective estrogen receptor downregulator and antagonist
分子名称: 3-(1-(4-Chlorophenyl)-3,4-dihydro-1H-pyrido(3,4-b)indol-2(9H)-yl)propanoic acid, ESTROGEN RECEPTOR
著者Norman, R.A, Bradbury, R.H, de Almeida, C, Andrews, D.M, Ballard, P, Buttar, D, Callis, R.J, Currie, G.S, Curwen, J.O, Davies, C.D, de Savi, C, Donald, C.S, Feron, L.J.L, Glossop, S.C, Hayter, B.R, Karoutchi, G, Lamont, S.G, MacFaul, P, Moss, T, Pearson, S.E, Rabow, A.A, Tonge, M, Walker, G.E, Weir, H.M, Wilson, Z.
登録日2015-07-28
公開日2015-10-14
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Optimization of a Novel Binding Motif to (E)-3-(3,5-Difluoro-4-((1R,3R)-2-(2-Fluoro-2-Methylpropyl)-3-Methyl-2, 3,4,9-Tetrahydro-1H-Pyrido[3,4-B]Indol-1-Yl)Phenyl)Acrylic Acid (Azd9496), a Potent and Orally Bioavailable Selective Estrogen Receptor Downregulator and Antagonist.
J.Med.Chem., 58, 2015
1AUU
DownloadVisualize
BU of 1auu by Molmil
SOLUTION STRUCTURE OF THE RNA-BINDING DOMAIN OF THE ANTITERMINATOR PROTEIN SACY, NMR, 10 STRUCTURES
分子名称: SACY
著者Kochoyan, M.
登録日1997-09-02
公開日1997-11-12
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献From genetic to structural characterization of a new class of RNA-binding domain within the SacY/BglG family of antiterminator proteins.
EMBO J., 16, 1997
5AAV
DownloadVisualize
BU of 5aav by Molmil
Optimization of a novel binding motif to to (E)-3-(3,5-difluoro-4-((1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H- pyrido(3,4-b)indol-1-yl)phenyl)acrylic acid (AZD9496), a potent and orally bioavailable selective estrogen receptor downregulator and antagonist
分子名称: (2E)-3-{4-[(1E)-1,2-DIPHENYLBUT-1-ENYL]PHENYL}ACRYLIC ACID, ESTROGEN RECEPTOR
著者Norman, R.A, Bradbury, R.H, de Almeida, C, Andrews, D.M, Ballard, P, Buttar, D, Callis, R.J, Currie, G.S, Curwen, J.O, Davies, C.D, de Savi, C, Donald, C.S, Feron, L.J.L, Glossop, S.C, Hayter, B.R, Karoutchi, G, Lamont, S.G, MacFaul, P, Moss, T, Pearson, S.E, Rabow, A.A, Tonge, M, Walker, G.E, Weir, H.M, Wilson, Z.
登録日2015-07-29
公開日2015-10-14
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Optimization of a Novel Binding Motif to (E)-3-(3,5-Difluoro-4-((1R,3R)-2-(2-Fluoro-2-Methylpropyl)-3-Methyl-2, 3,4,9-Tetrahydro-1H-Pyrido[3,4-B]Indol-1-Yl)Phenyl)Acrylic Acid (Azd9496), a Potent and Orally Bioavailable Selective Estrogen Receptor Downregulator and Antagonist.
J.Med.Chem., 58, 2015
6LXC
DownloadVisualize
BU of 6lxc by Molmil
X-ray structure of human PPARalpha ligand binding domain-saroglitazar co-crystals obtained by delipidation and cross-seeding
分子名称: (2S)-2-ethoxy-3-[4-[2-[2-methyl-5-(4-methylsulfanylphenyl)pyrrol-1-yl]ethoxy]phenyl]propanoic acid, Peroxisome proliferator-activated receptor alpha
著者Kamata, S, Honda, A, Ishikawa, R, Akahane, M, Oyama, T, Ishii, I.
登録日2020-02-10
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
5EYP
DownloadVisualize
BU of 5eyp by Molmil
TUBULIN-DARPIN COMPLEX
分子名称: DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN), GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, ...
著者Ahmad, S, Knossow, M, Gigant, B.
登録日2015-11-25
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Destabilizing an interacting motif strengthens the association of a designed ankyrin repeat protein with tubulin.
Sci Rep, 6, 2016
5SBG
DownloadVisualize
BU of 5sbg by Molmil
The crystal structure of METP in complex with Zn at a resolution of 1.34 A.
分子名称: METP, miniaturized rubredoxin, ZINC ION
著者Di Costanzo, L, La Gatta, S, Chino, M.
登録日2021-08-24
公開日2023-02-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.338 Å)
主引用文献Designed Rubredoxin miniature in a fully artificial electron chain triggered by visible light
Nat Commun, 14, 2023
7YXU
DownloadVisualize
BU of 7yxu by Molmil
Crystal structure of agonistic antibody 1618 fab domain bound to human 4-1BB.
分子名称: MANGANESE (II) ION, Tumor necrosis factor receptor superfamily member 9, heavy chain of Fab, ...
著者Hakansson, M, Rose, N, Petersson, J, Enell Smith, K, Thorolfsson, M, von Schantz, L.
登録日2022-02-16
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献The Bispecific Tumor Antigen-Conditional 4-1BB x 5T4 Agonist, ALG.APV-527, Mediates Strong T-Cell Activation and Potent Antitumor Activity in Preclinical Studies.
Mol.Cancer Ther., 22, 2023
5F1C
DownloadVisualize
BU of 5f1c by Molmil
Crystal structure of an invertebrate P2X receptor from the Gulf Coast tick in the presence of ATP and Zn2+ ion at 2.9 Angstroms
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Putative uncharacterized protein, ...
著者Kasuya, G, Hattori, M, Ishitani, R, Nureki, O.
登録日2015-11-30
公開日2016-03-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels
Cell Rep, 14, 2016
8COY
DownloadVisualize
BU of 8coy by Molmil
Structure of the catalytic domain of P. vivax Sub1 (triclinic crystal form) in complex with inhibitor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, SULFATE ION, ...
著者Martinez, M, Bouillon, A, Batista, F, Alzari, P.M, Barale, J.C, Haouz, A.
登録日2023-03-01
公開日2023-07-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.507 Å)
主引用文献3D structures of the Plasmodium vivax subtilisin-like drug target SUB1 reveal conformational changes to accommodate a substrate-derived alpha-ketoamide inhibitor.
Acta Crystallogr D Struct Biol, 79, 2023
6S31
DownloadVisualize
BU of 6s31 by Molmil
Crystal structure of ene-reductase GsOYE from Galdieria sulphuraria in complex with 4-Hydroxybenzaldehyde
分子名称: FLAVIN MONONUCLEOTIDE, NADPH2 dehydrogenase-like protein, P-HYDROXYBENZALDEHYDE
著者Robescu, M.R, Niero, M, Hall, M, Bergantino, E, Cendron, L.
登録日2019-06-23
公開日2020-01-29
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Two new ene-reductases from photosynthetic extremophiles enlarge the panel of old yellow enzymes: CtOYE and GsOYE.
Appl.Microbiol.Biotechnol., 104, 2020
6RTL
DownloadVisualize
BU of 6rtl by Molmil
BACTERIOPHAGE SPP1 PROCAPSID-II PROTEIN
分子名称: Major capsid protein
著者Ignatiou, A, Brasiles, S, El Sadek, M, Buerger, J, Mielke, T, Topf, M, Tavares, P.
登録日2019-05-24
公開日2019-10-23
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural transitions during the scaffolding-driven assembly of a viral capsid.
Nat Commun, 10, 2019
4L3P
DownloadVisualize
BU of 4l3p by Molmil
Crystal Structure of 2-(1-benzothiophen-7-yl)-4-[1-(piperidin-4-yl)-1H-pyrazol-4-yl]furo[2,3-c]pyridin-7-amine bound to TAK1-TAB1
分子名称: 2-(1-benzothiophen-7-yl)-4-[1-(piperidin-4-yl)-1H-pyrazol-4-yl]furo[2,3-c]pyridin-7-amine, Mitogen-activated protein kinase kinase kinase 7, TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 chimera
著者Wang, J, Hornberger, K.R, Crew, A.P, Steinbacher, S, Maskos, K, Moertl, M.
登録日2013-06-06
公開日2013-06-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Discovery and optimization of 7-aminofuro[2,3-c]pyridine inhibitors of TAK1.
Bioorg.Med.Chem.Lett., 23, 2013
1S46
DownloadVisualize
BU of 1s46 by Molmil
Covalent intermediate of the E328Q amylosucrase mutant
分子名称: amylosucrase, beta-D-glucopyranose
著者Jensen, M.H, Mirza, O, Albenne, C, Remaud-Simeon, M, Monsan, P, Gajhede, M, Skov, L.K.
登録日2004-01-15
公開日2004-03-23
最終更新日2021-10-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the covalent intermediate of amylosucrase from Neisseria polysaccharea.
Biochemistry, 43, 2004
1WM0
DownloadVisualize
BU of 1wm0 by Molmil
PPARgamma in complex with a 2-BABA compound
分子名称: 14-mer from Nuclear receptor coactivator 2, 2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID, Peroxisome proliferator activated receptor gamma
著者Ostberg, T, Svensson, S, Selen, G, Uppenberg, J, Thor, M, Sundbom, M, Sydow-Backman, M, Gustavsson, A.L, Jendeberg, L.
登録日2004-07-01
公開日2004-09-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A new class of peroxisome proliferator-activated receptor agonists with a novel binding epitope shows antidiabetic effects
J.Biol.Chem., 279, 2004
8CP0
DownloadVisualize
BU of 8cp0 by Molmil
Structure of the catalytic domain of P. vivax Sub1 (trigonal crystal form)
分子名称: CALCIUM ION, subtilisin
著者Martinez, M, Bouillon, A, Batista, F, Alzari, P.M, Barale, J.C, Haouz, A.
登録日2023-03-01
公開日2023-07-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.251 Å)
主引用文献3D structures of the Plasmodium vivax subtilisin-like drug target SUB1 reveal conformational changes to accommodate a substrate-derived alpha-ketoamide inhibitor.
Acta Crystallogr D Struct Biol, 79, 2023
8COZ
DownloadVisualize
BU of 8coz by Molmil
Structure of the catalytic domain of P. vivax Sub1 (triclinic crystal form)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, SULFATE ION, ...
著者Martinez, M, Bouillon, A, Batista, F, Alzari, P.M, Barale, J.C, Haouz, A.
登録日2023-03-01
公開日2023-07-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.438 Å)
主引用文献3D structures of the Plasmodium vivax subtilisin-like drug target SUB1 reveal conformational changes to accommodate a substrate-derived alpha-ketoamide inhibitor.
Acta Crystallogr D Struct Biol, 79, 2023
6V3Z
DownloadVisualize
BU of 6v3z by Molmil
Structure of Salmonella enteritidis Sen1395
分子名称: Sen1395
著者Galan, J.E, Lara-Tejero, M.
登録日2019-11-27
公開日2020-01-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanisms of substrate recognition by a typhoid toxin secretion-associated muramidase.
Elife, 9, 2020
5A0D
DownloadVisualize
BU of 5a0d by Molmil
N-terminal thioester domain of surface protein from Clostridium perfringens, Cys138Ala mutant
分子名称: 1,2-ETHANEDIOL, SURFACE ANCHORED PROTEIN
著者Walden, M, Edwards, J.M, Dziewulska, A.M, Kan, S.-Y, Schwarz-Linek, U, Banfield, M.J.
登録日2015-04-17
公開日2015-06-03
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献An internal thioester in a pathogen surface protein mediates covalent host binding.
Elife, 4, 2015
2MFZ
DownloadVisualize
BU of 2mfz by Molmil
NMR structure of C-terminal domain from A. ventricosus minor ampullate spidroin (MiSp)
分子名称: Minor ampullate spidroin
著者Otikovs, M, Jaudzems, K, Andersson, M, Chen, G, Landreh, M, Nordling, K, Kronqvist, N, Westermark, P, Jornvall, H, Knight, S, Ridderstrale, Y, Holm, L, Meng, Q, Chesler, M, Johansson, J, Rising, A.
登録日2013-10-24
公開日2014-08-20
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Carbonic Anhydrase Generates CO2 and H+ That Drive Spider Silk Formation Via Opposite Effects on the Terminal Domains
Plos Biol., 12, 2014
5ANN
DownloadVisualize
BU of 5ann by Molmil
Structure of fructofuranosidase from Xanthophyllomyces dendrorhous
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-FRUCTOFURANOSIDASE, ...
著者Ramirez-Escudero, M, Sanz-Aparicio, J.
登録日2015-09-07
公開日2016-02-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity
J.Biol.Chem., 291, 2016
1WU6
DownloadVisualize
BU of 1wu6 by Molmil
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase E70A mutant complexed with xylobiose
分子名称: GLYCEROL, NICKEL (II) ION, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, ...
著者Fushinobu, S, Hidaka, M, Honda, Y, Wakagi, T, Shoun, H, Kitaoka, M.
登録日2004-12-01
公開日2005-02-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural Basis for the Specificity of the Reducing End Xylose-releasing Exo-oligoxylanase from Bacillus halodurans C-125
J.Biol.Chem., 280, 2005

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon