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PDB: 31 results

9G58
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BU of 9g58 by Molmil
Pseudomonas fluorescens periplasmic aspartic peptidase Pfl01_1762 (RloA)
Descriptor: Putative ATP-dependent zinc protease domain-containing protein
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2024-07-16
Release date:2025-04-09
Last modified:2025-04-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Secreted retropepsin-like enzymes are essential for stress tolerance and biofilm formation in Pseudomonas aeruginosa.
Biorxiv, 2025
9ETK
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BU of 9etk by Molmil
Crystal structure of Vibrio cholerae RNase AM
Descriptor: GLYCEROL, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2024-03-26
Release date:2024-09-11
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Diribonuclease activity eliminates toxic diribonucleotide accumulation.
Cell Rep, 43, 2024
9G59
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BU of 9g59 by Molmil
Pseudomonas aeruginosa periplasmic aspartic peptidase PA0462 (RloA2)
Descriptor: Putative ATP-dependent zinc protease domain-containing protein
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2024-07-16
Release date:2025-04-09
Last modified:2025-04-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Secreted retropepsin-like enzymes are essential for stress tolerance and biofilm formation in Pseudomonas aeruginosa.
Biorxiv, 2025
6N6D
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BU of 6n6d by Molmil
Vibrio cholerae Oligoribonuclease bound to pAG
Descriptor: Oligoribonuclease, RNA (5'-R(P*AP*G)-3'), SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.534 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6K
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BU of 6n6k by Molmil
Human REXO2 bound to pAG
Descriptor: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.418 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6F
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BU of 6n6f by Molmil
Vibrio cholerae Oligoribonuclease bound to pGC
Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*C)-3'), SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.735 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6J
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BU of 6n6j by Molmil
Human REXO2 bound to pAA
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.317 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6C
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BU of 6n6c by Molmil
Vibrio cholerae Oligoribonuclease bound to pAA
Descriptor: RNA (5'-R(P*AP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.619 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6H
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BU of 6n6h by Molmil
Vibrio cholerae Oligoribonuclease bound to pCpU
Descriptor: Oligoribonuclease, RNA (5'-R(P*CP*U)-3'), SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.757 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6A
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BU of 6n6a by Molmil
Vibrio cholerae Oligoribonuclease bound to pGG
Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*G)-3'), SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6G
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BU of 6n6g by Molmil
Vibrio cholerae Oligoribonuclease bound to pCG
Descriptor: Oligoribonuclease, RNA (5'-R(P*CP*G)-3'), SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.018 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6I
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BU of 6n6i by Molmil
Human REXO2 bound to pGG
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.431 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6E
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BU of 6n6e by Molmil
Vibrio cholerae Oligoribonuclease bound to pGA
Descriptor: RNA (5'-R(P*GP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.578 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
7MPS
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BU of 7mps by Molmil
Brucella melitensis NrnC with engaged loop
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, NanoRNase C, SULFATE ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQD
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BU of 7mqd by Molmil
Bartonella henselae NrnC complexed with pAGG. D4 symmetry.
Descriptor: NanoRNase C, RNA (5'-R(P*AP*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPP
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BU of 7mpp by Molmil
Bartonella henselae NrnC cleaving pGG in the presence of Mg2+
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPL
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BU of 7mpl by Molmil
Bartonella henselae NrnC bound to pGG
Descriptor: 5'-phosphorylated GG, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPR
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BU of 7mpr by Molmil
Brucella melitensis NrnC
Descriptor: NanoRNase C, SULFATE ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQG
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BU of 7mqg by Molmil
Bartonella henselae NrnC complexed with pAAAGG. C1 reconstruction.
Descriptor: NanoRNase C, RNA (5'-R(P*AP*AP*AP*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPM
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BU of 7mpm by Molmil
Bartonella henselae NrnC bound to pAA
Descriptor: 5'-phosphorylated AA, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPN
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BU of 7mpn by Molmil
Bartonella henselae NrnC bound to pGC
Descriptor: 5'-phosphorylated GC, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQC
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BU of 7mqc by Molmil
Bartonella henselae NrnC bound to pGG. C1 reconstruction.
Descriptor: NanoRNase C, RNA (5'-R(P*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPO
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BU of 7mpo by Molmil
Bartonella henselae NrnC bound to pAp
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, NanoRNase C
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MQI
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BU of 7mqi by Molmil
Bartonella henselae NrnC complexed with pAAAGG in the presence of Ca2+. C1 reconstruction.
Descriptor: NanoRNase C, RNA (5'-R(P*AP*AP*AP*GP*G)-3')
Authors:Lormand, J.D, Brownfield, B, Fromme, J.C, Sondermann, H.
Deposit date:2021-05-05
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021
7MPQ
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BU of 7mpq by Molmil
Bartonella henselae NrnC cleaving pGG in the presence of Mn2+
Descriptor: 5'-phosphorylated GG, GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2021-05-04
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural characterization of NrnC identifies unifying features of dinucleotidases.
Elife, 10, 2021

 

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數據於2025-05-21公開中

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