Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 78 件

2M93
DownloadVisualize
BU of 2m93 by Molmil
Structure of d[TTGGGTGGGCGCGAAGCATTCGCGGGGTGGGT] quadruplex-duplex hybrid
分子名称: 32-MER DNA
著者Lim, K.W, Phan, A.T.
登録日2013-05-30
公開日2013-07-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis of DNA quadruplex-duplex junction formation.
Angew.Chem.Int.Ed.Engl., 52, 2013
2M8Z
DownloadVisualize
BU of 2m8z by Molmil
Structure of d[GGTTGGCGCGAAGCATTCGCGGGTTGG] quadruplex-duplex hybrid
分子名称: 27-MER DNA
著者Lim, K.W, Phan, A.T.
登録日2013-05-30
公開日2013-07-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis of DNA quadruplex-duplex junction formation.
Angew.Chem.Int.Ed.Engl., 52, 2013
1GNE
DownloadVisualize
BU of 1gne by Molmil
THE THREE-DIMENSIONAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE OF SCHISTOSOMA JAPONICUM FUSED WITH A CONSERVED NEUTRALIZING EPITOPE ON GP41 OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
分子名称: GLUTATHIONE, GLUTATHIONE S-TRANSFERASE
著者Lim, K, Ho, J.X, Keeling, K, Gilliland, G.L, Ji, X, Ruker, F, Carter, D.C.
登録日1994-06-16
公開日1994-11-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Three-dimensional structure of Schistosoma japonicum glutathione S-transferase fused with a six-amino acid conserved neutralizing epitope of gp41 from HIV.
Protein Sci., 3, 1994
1MW5
DownloadVisualize
BU of 1mw5 by Molmil
Structure of HI1480 from Haemophilus influenzae
分子名称: HYPOTHETICAL PROTEIN HI1480
著者Lim, K, Sarikaya, E, Howard, A, Galkin, A, Herzberg, O, Structure 2 Function Project (S2F)
登録日2002-09-27
公開日2003-11-18
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: a protein with no known sequence homologues
PROTEINS: STRUCT.,FUNCT.,GENET., 56, 2004
1K1E
DownloadVisualize
BU of 1k1e by Molmil
Structure Of the cobalt-bound form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COBALT (II) ION, GLYCEROL, ...
著者Lim, K, Herzberg, O, Structure 2 Function Project (S2F)
登録日2001-09-25
公開日2002-02-27
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献From structure to function: YrbI from Haemophilus influenzae (HI1679) is a phosphatase.
Proteins, 46, 2002
1MXI
DownloadVisualize
BU of 1mxi by Molmil
Structure of YibK from Haemophilus influenzae (HI0766): a Methyltransferase with a Cofactor Bound at a Site Formed by a Knot
分子名称: Hypothetical tRNA/rRNA methyltransferase HI0766, IODIDE ION, S-ADENOSYL-L-HOMOCYSTEINE
著者Lim, K, Zhang, H, Tempczyk, A, Bonander, N, Toedt, J, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F)
登録日2002-10-02
公開日2003-02-25
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): a Cofactor Bound at a Site Formed by a Knot
Proteins, 51, 2003
1J7G
DownloadVisualize
BU of 1j7g by Molmil
Structure of YihZ from Haemophilus influenzae (HI0670), a D-Tyr-tRNA(Tyr) deacylase
分子名称: D-tyrosyl-tRNA(Tyr) deacylase
著者Lim, K, Herzberg, O, Structure 2 Function Project (S2F)
登録日2001-05-16
公開日2003-04-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献A Catalytic Mechanism for D-Tyr-tRNATyr Deacylase Based on the Crystal Structure of Hemophilus influenzae HI0670
J.Biol.Chem., 278, 2003
1J8B
DownloadVisualize
BU of 1j8b by Molmil
Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function
分子名称: YbaB
著者Lim, K, Tempcyzk, A, Toedt, J, Parsons, J.F, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F)
登録日2001-05-21
公開日2003-01-14
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR
Proteins, 50, 2003
1IM8
DownloadVisualize
BU of 1im8 by Molmil
Crystal structure of YecO from Haemophilus influenzae (HI0319), a methyltransferase with a bound S-adenosylhomocysteine
分子名称: CHLORIDE ION, S-ADENOSYL-L-HOMOSELENOCYSTEINE, YecO
著者Lim, K, Zhang, H, Tempczyk, A, Bonander, N, Toedt, J, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F)
登録日2001-05-10
公開日2001-11-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of YecO from Haemophilus influenzae (HI0319) reveals a methyltransferase fold and a bound S-adenosylhomocysteine.
Proteins, 45, 2001
1J85
DownloadVisualize
BU of 1j85 by Molmil
Structure of YibK from Haemophilus influenzae (HI0766), a truncated sequence homolog of tRNA (guanosine-2'-O-) methyltransferase (SpoU)
分子名称: YibK
著者Lim, K, Zhang, H, Toedt, J, Tempcyzk, A, Krajewski, W, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F)
登録日2001-05-20
公開日2003-02-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): A cofactor bound at a site formed by a knot
Proteins, 51, 2003
1J8D
DownloadVisualize
BU of 1j8d by Molmil
Structure Of the metal-free form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679)
分子名称: GLYCEROL, deoxy-D-mannose-octulosonate 8-phosphate phosphatase
著者Lim, K, Herzberg, O, Structure 2 Function Project (S2F)
登録日2001-05-21
公開日2002-02-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献From structure to function: YrbI from Haemophilus influenzae (HI1679) is a phosphatase.
Proteins, 46, 2002
1AZF
DownloadVisualize
BU of 1azf by Molmil
CHICKEN EGG WHITE LYSOZYME CRYSTAL GROWN IN BROMIDE SOLUTION
分子名称: BROMIDE ION, LYSOZYME
著者Lim, K, Nadarajah, A, Forsythe, E.L, Pusey, M.L.
登録日1997-11-17
公開日1998-02-25
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Locations of bromide ions in tetragonal lysozyme crystals.
Acta Crystallogr.,Sect.D, 54, 1998
1X6J
DownloadVisualize
BU of 1x6j by Molmil
Crystal structure of ygfY from Escherichia coli
分子名称: Hypothetical protein ygfY
著者Lim, K, Doseeva, V, Sarikaya Demirkan, E, Pullalarevu, S, Krajewski, W, Galkin, A, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
登録日2004-08-11
公開日2005-02-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation
Proteins, 58, 2005
1X6I
DownloadVisualize
BU of 1x6i by Molmil
Crystal structure of ygfY from Escherichia coli
分子名称: Hypothetical protein ygfY
著者Lim, K, Doseeva, V, Sarikaya Demirkan, E, Pullalarevu, S, Krajewski, W, Galkin, A, Howard, A, Herzberg, O, Structure 2 Function Project (S2F)
登録日2004-08-11
公開日2005-02-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation
Proteins, 58, 2005
6T76
DownloadVisualize
BU of 6t76 by Molmil
PII-like protein CutA from Nostoc sp. PCC 7120 in apo form
分子名称: Periplasmic divalent cation tolerance protein, SULFATE ION
著者Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
登録日2019-10-21
公開日2020-07-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 288, 2021
6T7E
DownloadVisualize
BU of 6t7e by Molmil
PII-like protein CutA from Nostoc sp. PCC7120 in complex with MES
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Periplasmic divalent cation tolerance protein
著者Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
登録日2019-10-21
公開日2020-07-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 288, 2021
7OBJ
DownloadVisualize
BU of 7obj by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with cyclic di-AMP (c-di-AMP)
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Membrane-associated protein slr1513
著者Selim, K.A, Albrecht, R, Hartmann, M.D.
登録日2021-04-22
公開日2022-02-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Diurnal metabolic control in cyanobacteria requires perception of second messenger signaling molecule c-di-AMP by the carbon control protein SbtB.
Sci Adv, 7, 2021
5O3P
DownloadVisualize
BU of 5o3p by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in Apo state, trigonal crystal form
分子名称: DI(HYDROXYETHYL)ETHER, Membrane-associated protein slr1513, PENTAETHYLENE GLYCOL
著者Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
登録日2017-05-24
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献PII-like signaling protein SbtB links cAMP sensing with cyanobacterial inorganic carbon response.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5O3R
DownloadVisualize
BU of 5o3r by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with AMP
分子名称: ADENOSINE MONOPHOSPHATE, BICARBONATE ION, Membrane-associated protein slr1513
著者Selim, K.A, Forchhammer, K, Albrecht, R, Hartmann, M.D.
登録日2017-05-24
公開日2018-05-16
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献PII-like signaling protein SbtB links cAMP sensing with cyanobacterial inorganic carbon response.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5O3S
DownloadVisualize
BU of 5o3s by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in Apo state, hexagonal crystal form
分子名称: Membrane-associated protein slr1513
著者Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
登録日2017-05-24
公開日2018-05-16
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献PII-like signaling protein SbtB links cAMP sensing with cyanobacterial inorganic carbon response.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5O3Q
DownloadVisualize
BU of 5o3q by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with cyclic AMP (cAMP)
分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, BICARBONATE ION, Membrane-associated protein slr1513
著者Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
登録日2017-05-24
公開日2018-05-16
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献PII-like signaling protein SbtB links cAMP sensing with cyanobacterial inorganic carbon response.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7R2Y
DownloadVisualize
BU of 7r2y by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ATP resulting from short ATP soak, conflicting T-loop and C-loop with partial occupancy
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Membrane-associated protein slr1513, SODIUM ION
著者Selim, K.A, Albrecht, R, Hartmann, M.D.
登録日2022-02-06
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R30
DownloadVisualize
BU of 7r30 by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ADP and AMP resulting from ADP soak
分子名称: ADENOSINE-5'-DIPHOSPHATE, BICARBONATE ION, HEXAETHYLENE GLYCOL, ...
著者Selim, K.A, Albrecht, R, Hartmann, M.D.
登録日2022-02-06
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R31
DownloadVisualize
BU of 7r31 by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803, C105A+C110A variant, in complex with ATP (co-crystal), tetragonal crystal form
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, Membrane-associated protein slr1513, ...
著者Selim, K.A, Albrecht, R, Hartmann, M.D.
登録日2022-02-06
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023
7R2Z
DownloadVisualize
BU of 7r2z by Molmil
Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in complex with ATP and ADP resulting from long ATP soak
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Membrane-associated protein slr1513
著者Selim, K.A, Albrecht, R, Hartmann, M.D.
登録日2022-02-06
公開日2023-02-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA.
Proc.Natl.Acad.Sci.USA, 120, 2023

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon