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PDB: 76 件

3E81
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Structure-function Analysis of 2-Keto-3-deoxy-D-glycero-D-galacto-nononate-9-phosphate (KDN) Phosphatase Defines a New Clad Within the Type C0 HAD Subfamily
分子名称: 1,2-ETHANEDIOL, Acylneuraminate cytidylyltransferase, DI(HYDROXYETHYL)ETHER, ...
著者Lu, Z, Wang, L, Dunaway-Mariano, D, Allen, K.N.
登録日2008-08-19
公開日2008-11-04
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.629 Å)
主引用文献Structure-Function Analysis of 2-Keto-3-deoxy-D-glycero-D-galactonononate-9-phosphate Phosphatase Defines Specificity Elements in Type C0 Haloalkanoate Dehalogenase Family Members.
J.Biol.Chem., 284, 2009
3E8M
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Structure-function Analysis of 2-Keto-3-deoxy-D-glycero-D-galacto-nononate-9-phosphate (KDN) Phosphatase Defines a New Clad Within the Type C0 HAD Subfamily
分子名称: 1,2-ETHANEDIOL, ACETIC ACID, Acylneuraminate cytidylyltransferase, ...
著者Lu, Z, Wang, L, Dunaway-Mariano, D, Allen, K.N.
登録日2008-08-20
公開日2008-11-04
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Structure-Function Analysis of 2-Keto-3-deoxy-D-glycero-D-galactonononate-9-phosphate Phosphatase Defines Specificity Elements in Type C0 Haloalkanoate Dehalogenase Family Members.
J.Biol.Chem., 284, 2009
3E84
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Structure-function Analysis of 2-Keto-3-deoxy-D-glycero-D-galacto-nononate-9-phosphate (KDN) Phosphatase Defines a New Clad Within the Type C0 HAD Subfamily
分子名称: 1,2-ETHANEDIOL, Acylneuraminate cytidylyltransferase, DI(HYDROXYETHYL)ETHER, ...
著者Lu, Z, Wang, L, Dunaway-Mariano, D, Allen, K.N.
登録日2008-08-19
公開日2008-11-04
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure-Function Analysis of 2-Keto-3-deoxy-D-glycero-D-galactonononate-9-phosphate Phosphatase Defines Specificity Elements in Type C0 Haloalkanoate Dehalogenase Family Members.
J.Biol.Chem., 284, 2009
8GTZ
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Crystal structure of exopolyphosphatase (PPX) mutant E137A from Zymomonas mobilis in complex with magnesium ions
分子名称: CHLORIDE ION, MAGNESIUM ION, Ppx/GppA phosphatase
著者Lu, Z, Wang, J, Zhang, B.
登録日2022-09-09
公開日2023-09-13
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Crystal structure of exopolyphosphatase (PPX) from Zymomonas mobilis in complex with magnesium ions
To Be Published
8GTY
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Crystal structure of exopolyphosphatase (PPX) from Zymomonas mobilis in complex with magnesium ions
分子名称: MAGNESIUM ION, Ppx/GppA phosphatase
著者Lu, Z, Wang, J, Zhang, B.
登録日2022-09-09
公開日2023-09-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of the exopolyphosphatase (PPX) from Zymomonas mobilis reveals a two-magnesium-ions PPX.
Int.J.Biol.Macromol., 262, 2024
6KGT
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Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis, complexed with faropenem
分子名称: (2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid, COBALT (II) ION, Penicillin-binding protein PbpB
著者Lu, Z.K, Zhang, A.L, Liu, X, Guddat, L, Yang, H.T, Rao, Z.H.
登録日2019-07-12
公開日2020-03-11
実験手法X-RAY DIFFRACTION (2.308 Å)
主引用文献Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation.
Mol.Pharmacol., 97, 2020
6KGH
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Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis (apo-form)
分子名称: COBALT (II) ION, Penicillin-binding protein PbpB, SODIUM ION
著者Lu, Z.K, Zhang, A.L, Liu, X, Guddat, L, Yang, H.T, Rao, Z.H.
登録日2019-07-11
公開日2020-03-11
実験手法X-RAY DIFFRACTION (2.108 Å)
主引用文献Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation.
Mol.Pharmacol., 97, 2020
6KGS
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BU of 6kgs by Molmil
Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis, complexed with meropenem
分子名称: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, COBALT (II) ION, Penicillin-binding protein PbpB
著者Lu, Z.K, Zhang, A.L, Liu, X, Guddat, L, Yang, H.T, Rao, Z.H.
登録日2019-07-12
公開日2020-03-11
実験手法X-RAY DIFFRACTION (2.309 Å)
主引用文献Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation.
Mol.Pharmacol., 97, 2020
6KGW
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Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis, complexed with ampicillin
分子名称: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, COBALT (II) ION, Penicillin-binding protein PbpB
著者Lu, Z.K, Zhang, A.L, Liu, X, Guddat, L, Yang, H.T, Rao, Z.H.
登録日2019-07-12
公開日2020-03-11
実験手法X-RAY DIFFRACTION (2.407 Å)
主引用文献Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation.
Mol.Pharmacol., 97, 2020
6KGU
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BU of 6kgu by Molmil
Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis, complexed with aztreonam
分子名称: 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid, COBALT (II) ION, Penicillin-binding protein PbpB
著者Lu, Z.K, Zhang, A.L, Liu, X, Guddat, L, Yang, H.T, Rao, Z.H.
登録日2019-07-12
公開日2020-03-11
実験手法X-RAY DIFFRACTION (2.106 Å)
主引用文献Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation.
Mol.Pharmacol., 97, 2020
6KGV
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BU of 6kgv by Molmil
Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis, complexed with amoxicillin
分子名称: 2-{1-[2-AMINO-2-(4-HYDROXY-PHENYL)-ACETYLAMINO]-2-OXO-ETHYL}-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID, COBALT (II) ION, Penicillin-binding protein PbpB
著者Lu, Z.K, Zhang, A.L, Liu, X, Guddat, L, Yang, H.T, Rao, Z.H.
登録日2019-07-12
公開日2020-03-11
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation.
Mol.Pharmacol., 97, 2020
2MA9
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BU of 2ma9 by Molmil
HIV-1 Vif SOCS-box and Elongin BC solution structure
分子名称: Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, Virion infectivity factor
著者Lu, Z, Bergeron, J.R, Atkinson, R.A, Schaller, T, Veselkov, D.A, Oregioni, A, Yang, Y, Matthews, S.J, Malim, M.H, Sanderson, M.R.
登録日2013-07-01
公開日2013-12-11
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Insight into the HIV-1 Vif SOCS-box-ElonginBC interaction.
OPEN BIOLOGY, 3, 2013
1YMQ
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BU of 1ymq by Molmil
HAD Superfamily Phosphotransferase Substrate Diversification: Structure and Function Analysis of the HAD Subclass IIB Sugar Phosphatase BT4131
分子名称: MAGNESIUM ION, SULFATE ION, sugar-phosphate phosphatase BT4131
著者Lu, Z, Dunaway-Mariano, D, Allen, K.N.
登録日2005-01-21
公開日2005-06-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献HAD Superfamily Phosphotransferase Substrate Diversification: Structure and Function Analysis of HAD Subclass IIB Sugar Phosphatase BT4131.
Biochemistry, 44, 2005
4OTX
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Structure of the anti-Francisella tularensis O-antigen antibody N203 Fab fragment
分子名称: AZIDE ION, CHLORIDE ION, N203 heavy chain, ...
著者Lu, Z, Rynkiewicz, M.J, Yang, C.-Y, Madico, G, Perkins, H.M, Roche, M.I, Seaton, B.A, Sharon, J.
登録日2014-02-14
公開日2014-09-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Functional and Structural Characterization of Francisella tularensis O-Antigen Antibodies at the Low End of Antigen Reactivity.
Monoclon Antib Immunodiagn Immunother, 33, 2014
4PB0
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BU of 4pb0 by Molmil
Structure of the Fab fragment of the anti-Francisella tularensis GroEL antibody Ab53
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Ab53 heavy chain, Ab53 light chain, ...
著者Lu, Z, Rynkiewicz, M.J, Seaton, B.A, Sharon, J.
登録日2014-04-10
公開日2014-07-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献B-Cell Epitopes in GroEL of Francisella tularensis.
Plos One, 9, 2014
2RBK
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X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal Intermediate in a Phosphoryl-transfer Superfamily.
分子名称: MAGNESIUM ION, Putative uncharacterized protein, oxido(dioxo)vanadium
著者Lu, Z, Dunaway-Mariano, D, Allen, K.N.
登録日2007-09-19
公開日2008-04-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state.
Proc.Natl.Acad.Sci.Usa, 105, 2008
4KPH
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BU of 4kph by Molmil
Structure of the Fab fragment of N62, a protective monoclonal antibody to the nonreducing end of Francisella tularensis O-antigen
分子名称: ACETATE ION, N62 heavy chain, N62 light chain
著者Lu, Z, Rynkiewicz, M.J, Yang, C.-Y, Madico, G, Perkins, H.M, Wang, Q, Costello, C.E, Zaia, J, Seaton, B.A, Sharon, J.
登録日2013-05-13
公開日2013-07-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献The binding sites of monoclonal antibodies to the non-reducing end of Francisella tularensis O-antigen accommodate mainly the terminal saccharide.
Immunology, 140, 2013
4PB9
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Structure of the Fab fragment of the anti-Francisella tularensis GroEL antibody Ab64
分子名称: Ab64 heavy chain, Ab64 light chain, SULFATE ION
著者Lu, Z, Rynkiewicz, M.J, Seaton, B.A, Sharon, J.
登録日2014-04-11
公開日2014-07-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献B-Cell Epitopes in GroEL of Francisella tularensis.
Plos One, 9, 2014
2RB5
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X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal Intermediate in a Phosphoryl-transfer Superfamily.
分子名称: MAGNESIUM ION, Putative uncharacterized protein, trioxido(oxo)tungsten
著者Lu, Z, Dunaway-Mariano, D, Allen, K.N.
登録日2007-09-18
公開日2008-04-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.03 Å)
主引用文献The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2RAV
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BU of 2rav by Molmil
X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal Intermediate in a Phosphoryl-transfer Superfamily.
分子名称: MAGNESIUM ION, Putative uncharacterized protein, trioxido(oxo)tungsten
著者Lu, Z, Dunaway-Mariano, D, Allen, K.N.
登録日2007-09-17
公開日2008-04-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2RAR
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BU of 2rar by Molmil
X-ray Crystallographic Structures Show Conservation of a Trigonal-Bipyramidal Intermediate in a Phosphoryl-transfer Superfamily.
分子名称: MAGNESIUM ION, Putative uncharacterized protein, oxido(dioxo)vanadium
著者Lu, Z, Dunaway-Mariano, D, Allen, K.N.
登録日2007-09-17
公開日2008-04-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献The catalytic scaffold of the haloalkanoic acid dehalogenase enzyme superfamily acts as a mold for the trigonal bipyramidal transition state.
Proc.Natl.Acad.Sci.Usa, 105, 2008
8XIY
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BU of 8xiy by Molmil
Crystal structure of an omega-transaminase mutant I77L/Q97E/H210N/N245D from Aspergillus terreus in complex with PLP
分子名称: D-aminoacid aminotransferase-like PLP-dependent enzyme, PYRIDOXAL-5'-PHOSPHATE
著者Lu, Z.Y, Hu, D, Xu, D.Z, He, Y.C.
登録日2023-12-20
公開日2024-02-07
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Efficient bioamination with an omega-transaminase mutant from Aspergillus terreus
To Be Published
7ZOI
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BU of 7zoi by Molmil
Carbohydrate binding domain CBM92-A from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588
分子名称: Glycoside hydrolase family 18
著者Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
登録日2022-04-25
公開日2023-05-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZOO
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BU of 7zoo by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588 in complex with gentiobiose
分子名称: Glycoside hydrolase family 18, beta-D-glucopyranose
著者Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
登録日2022-04-26
公開日2023-05-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024
7ZON
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BU of 7zon by Molmil
Carbohydrate binding domain CBM92-B from a multi-catalytic glucanase-chitinase from Chitinophaga pinensis DSM 2588 in complex with glucose
分子名称: Glycoside hydrolase family 18, PENTAETHYLENE GLYCOL, beta-D-glucopyranose
著者Mazurkewich, S, McKee, L.S, Lu, Z, Branden, G, Larsbrink, J.
登録日2022-04-26
公開日2023-05-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structural and biochemical analysis of family 92 carbohydrate-binding modules uncovers multivalent binding to beta-glucans.
Nat Commun, 15, 2024

 

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