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PDB: 488 results

3GUN
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BU of 3gun by Molmil
T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--aniline binding
Descriptor: ANILINE, CALCIUM ION, CHLORIDE ION, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2009-03-30
Release date:2009-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme.
Biochemistry, 48, 2009
3GUM
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BU of 3gum by Molmil
T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--p-xylene binding
Descriptor: ACETATE ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2009-03-30
Release date:2009-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme.
Biochemistry, 48, 2009
3GUK
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BU of 3guk by Molmil
T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Toluene binding
Descriptor: ACETATE ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2009-03-30
Release date:2009-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme.
Biochemistry, 48, 2009
7EL7
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BU of 7el7 by Molmil
NMR solution structure of the 1:1 complex of a quadruplex-duplex hybrid MYT1L and a platinum(II) ligand L1Pt(dien)
Descriptor: G-quadruplex DNA MYT1L, Pt(diethylenetriamine)(2-(pyridin-4-ylmethyl)benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetraone)
Authors:Liu, L.-Y, Liu, W, Mao, Z.-W.
Deposit date:2021-04-08
Release date:2021-12-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Spatial Matching Selectivity and Solution Structure of Organic-Metal Hybrid to Quadruplex-Duplex Hybrid.
Angew.Chem.Int.Ed.Engl., 60, 2021
5WYB
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BU of 5wyb by Molmil
Structure of Pseudomonas aeruginosa DspI
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETATE ION, Probable enoyl-CoA hydratase/isomerase
Authors:Liu, L, Peng, C, Li, T, Li, C, He, L, Song, Y, Zhu, Y, Shen, Y, Bao, R.
Deposit date:2017-01-12
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis.
Sci Rep, 8, 2018
4MO7
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BU of 4mo7 by Molmil
Crystal structure of superantigen PfiT
Descriptor: BETA-MERCAPTOETHANOL, MAGNESIUM ION, Transcriptional regulator I2
Authors:Liu, L.H, Chen, H, Li, H.M.
Deposit date:2013-09-11
Release date:2014-02-05
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Pfit is a structurally novel Crohn's disease-associated superantigen.
Plos Pathog., 9, 2013
4MXM
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BU of 4mxm by Molmil
Crystal structure of superantigen pfit
Descriptor: Transcriptional regulator I2
Authors:Liu, L.H, Chen, H, Li, H.M.
Deposit date:2013-09-26
Release date:2014-09-17
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Pfit is a structurally novel Crohn's disease-associated superantigen.
Plos Pathog., 9, 2013
5ZNT
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BU of 5znt by Molmil
Insect chitin deacetylase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ZINC ION, ...
Authors:Liu, L, Zhou, Y, Yang, Q.
Deposit date:2018-04-10
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.979 Å)
Cite:Structural and biochemical insights into the catalytic mechanisms of two insect chitin deacetylases of the carbohydrate esterase 4 family.
J. Biol. Chem., 294, 2019
6JW1
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BU of 6jw1 by Molmil
Universal RVD R* accommodates 5mC via water-mediated interactions
Descriptor: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5CM)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector
Authors:Liu, L, Yi, C.
Deposit date:2019-04-18
Release date:2020-04-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
J.Mol.Biol., 432, 2020
5ZNS
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BU of 5zns by Molmil
Insect chitin deacetylase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ZINC ION, ...
Authors:Liu, L, Zhou, Y, Yang, Q.
Deposit date:2018-04-10
Release date:2019-02-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.396 Å)
Cite:Structural and biochemical insights into the catalytic mechanisms of two insect chitin deacetylases of the carbohydrate esterase 4 family.
J. Biol. Chem., 294, 2019
8HFA
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BU of 8hfa by Molmil
The structure of chitin deacetylase VdPDA1 from Verticillium dahliae
Descriptor: NodB homology domain-containing protein, ZINC ION
Authors:Liu, L, Zhou, Y, Yang, Q.
Deposit date:2022-11-10
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Inhibition of chitin deacetylases to attenuate plant fungal diseases.
Nat Commun, 14, 2023
3DNA
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BU of 3dna by Molmil
Iodobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant (seleno version)
Descriptor: 2-HYDROXYETHYL DISULFIDE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2008-07-01
Release date:2008-11-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
5BZG
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BU of 5bzg by Molmil
Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule
Descriptor: 2-methyl-1,2,3,4-tetrahydroisoquinolin-5-amine, CD44 antigen, DIMETHYL SULFOXIDE, ...
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published
5BZL
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BU of 5bzl by Molmil
Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Descriptor: CD44 antigen, DIMETHYL SULFOXIDE, SULFATE ION, ...
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published
5BZQ
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BU of 5bzq by Molmil
Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Descriptor: 2-[3-(morpholin-4-yl)propyl]-1,2,3,4-tetrahydroisoquinolin-8-amine, CD44 antigen, DIMETHYL SULFOXIDE, ...
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published
5BZJ
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BU of 5bzj by Molmil
Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Descriptor: 2-[2-(1-methyl-1H-imidazol-2-yl)ethyl]-1,2,3,4-tetrahydroisoquinolin-8-amine, CD44 antigen, DIMETHYL SULFOXIDE, ...
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published
5BZN
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BU of 5bzn by Molmil
Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Descriptor: 2-(2-methoxyethyl)-1,2,3,4-tetrahydroisoquinolin-8-amine, CD44 antigen, DIMETHYL SULFOXIDE, ...
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published
3DMX
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BU of 3dmx by Molmil
Benzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Descriptor: 2-HYDROXYETHYL DISULFIDE, BENZENE, CHLORIDE ION, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2008-07-01
Release date:2009-01-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding
J.Mol.Biol., 385, 2009
3DN3
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BU of 3dn3 by Molmil
Iodopentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Descriptor: 1,2,3,4,5-pentafluoro-6-iodobenzene, 2-HYDROXYETHYL DISULFIDE, Lysozyme, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2008-07-01
Release date:2008-11-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3DN4
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BU of 3dn4 by Molmil
Iodobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Descriptor: 2-HYDROXYETHYL DISULFIDE, Lysozyme, PHOSPHATE ION, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2008-07-01
Release date:2008-11-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3DN0
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BU of 3dn0 by Molmil
Pentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
Descriptor: 1,2,3,4,5-pentafluorobenzene, 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2008-07-01
Release date:2008-11-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
5BZE
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BU of 5bze by Molmil
Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule
Descriptor: CD44 antigen, DIMETHYL SULFOXIDE, SULFATE ION, ...
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published
5BZM
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BU of 5bzm by Molmil
Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Descriptor: 2-[(4-amino-3-methylpyridin-2-yl)methyl]-1,2,3,4-tetrahydroisoquinolin-8-amine, CD44 antigen, DIMETHYL SULFOXIDE, ...
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published
5BZT
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BU of 5bzt by Molmil
Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
Descriptor: 2-(1,3-dimethoxypropan-2-yl)-1,2,3,4-tetrahydroisoquinolin-8-amine, CD44 antigen, DIMETHYL SULFOXIDE, ...
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published
5BZF
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BU of 5bzf by Molmil
Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule
Descriptor: 2-ethyl-1,2,3,4-tetrahydroisoquinolin-5-amine, CD44 antigen
Authors:Liu, L.K, Finzel, B.C.
Deposit date:2015-06-11
Release date:2016-06-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
To Be Published

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