Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 40 件
4X86
DownloadVisualize
BU of 4x86 by Molmil
Crystal structure of BAG6-Ubl4a complex
分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Large proline-rich protein BAG6, SULFATE ION, ...
著者Kuwabara, N, Kato, R.
登録日2014-12-10
公開日2015-02-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of a BAG6 (Bcl-2-associated Athanogene 6)-Ubl4a (Ubiquitin-like Protein 4a) Complex Reveals a Novel Binding Interface That Functions in Tail-anchored Protein Biogenesis
J.Biol.Chem., 290, 2015
5XFC
DownloadVisualize
BU of 5xfc by Molmil
Serial femtosecond X-ray structure of a stem domain of human O-mannose beta-1,2-N-acetylglucosaminyltransferase solved by Se-SAD using XFEL (refined against 13,000 patterns)
分子名称: 4-nitrophenyl beta-D-mannopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
著者Kuwabara, N, Fumiaki, Y, Kato, R, Manya, H.
登録日2017-04-10
公開日2017-08-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
5XFD
DownloadVisualize
BU of 5xfd by Molmil
Serial femtosecond X-ray structure of Agrocybe cylindracea galectin with lactose solved by Se-SAD using XFEL (refined against 60,000 patterns)
分子名称: Galactoside-binding lectin, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose
著者Kuwabara, N, Fumiaki, Y, Kato, R.
登録日2017-04-10
公開日2017-08-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
7E9J
DownloadVisualize
BU of 7e9j by Molmil
Crystal Structure of POMGNT2 in complex with UDP
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2, ...
著者Kuwabara, N.
登録日2021-03-04
公開日2021-05-05
最終更新日2021-07-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The structure of POMGNT2 provides new insights into the mechanism to determine the functional O-mannosylation site on alpha-dystroglycan.
Genes Cells, 26, 2021
7E9L
DownloadVisualize
BU of 7e9l by Molmil
Crystal Structure of POMGNT2 in complex with UDP and mono-mannosyl peptide (379Man short peptide)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kuwabara, N.
登録日2021-03-04
公開日2021-05-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The structure of POMGNT2 provides new insights into the mechanism to determine the functional O-mannosylation site on alpha-dystroglycan.
Genes Cells, 26, 2021
7E9K
DownloadVisualize
BU of 7e9k by Molmil
Crystal Structure of POMGNT2 in complex with UDP and mono-mannosyl peptide (379Man long peptide)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kuwabara, N.
登録日2021-03-04
公開日2021-05-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献The structure of POMGNT2 provides new insights into the mechanism to determine the functional O-mannosylation site on alpha-dystroglycan.
Genes Cells, 26, 2021
5GGP
DownloadVisualize
BU of 5ggp by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta1,2-Man-peptide
分子名称: 10-mer Peptide from Dystroglycan, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, ...
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-16
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGO
DownloadVisualize
BU of 5ggo by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GalNac-beta1,3-GlcNAc-beta-pNP
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-16
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.502 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGG
DownloadVisualize
BU of 5ggg by Molmil
Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form I
分子名称: Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-16
公開日2016-08-10
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGN
DownloadVisualize
BU of 5ggn by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta-pNP
分子名称: 4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-16
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.211 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGJ
DownloadVisualize
BU of 5ggj by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-alpha-pNP
分子名称: 4-nitrophenyl alpha-D-mannopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-16
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.424 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGL
DownloadVisualize
BU of 5ggl by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-alpha-pNP
分子名称: 4-nitrophenyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-16
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGI
DownloadVisualize
BU of 5ggi by Molmil
Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Mn, UDP and Mannosyl-peptide
分子名称: MANGANESE (II) ION, PHOSPHATE ION, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, ...
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-16
公開日2016-08-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGK
DownloadVisualize
BU of 5ggk by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-beta-pNP
分子名称: 1,2-ETHANEDIOL, 4-nitrophenyl beta-D-mannopyranoside, DI(HYDROXYETHYL)ETHER, ...
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-16
公開日2016-08-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGF
DownloadVisualize
BU of 5ggf by Molmil
Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form II
分子名称: Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
著者Kuwabara, N, Senda, T, Kato, R.
登録日2016-06-15
公開日2016-08-10
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
6KAK
DownloadVisualize
BU of 6kak by Molmil
Crystal structure of FKRP in complex with Mg ion
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fukutin-related protein, MAGNESIUM ION, ...
著者Kuwabara, N.
登録日2019-06-23
公開日2020-01-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.056 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6KAM
DownloadVisualize
BU of 6kam by Molmil
Crystal structure of FKRP in complex with Ba ion, CDP-ribtol, and sugar acceptor
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, ...
著者Kuwabara, N.
登録日2019-06-23
公開日2020-01-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6KAJ
DownloadVisualize
BU of 6kaj by Molmil
Crystal structure of FKRP in complex with Ba ion
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, CYTIDINE-5'-DIPHOSPHATE, ...
著者Kuwabara, N.
登録日2019-06-23
公開日2020-01-29
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.2249 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6KAL
DownloadVisualize
BU of 6kal by Molmil
Crystal structure of FKRP in complex with Mg ion and CMP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYTIDINE-5'-MONOPHOSPHATE, Fukutin-related protein, ...
著者Kuwabara, N.
登録日2019-06-23
公開日2020-01-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6KAN
DownloadVisualize
BU of 6kan by Molmil
Crystal structure of FKRP in complex with Ba ion
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, Fukutin-related protein, ...
著者Kuwabara, N.
登録日2019-06-23
公開日2020-01-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6L7U
DownloadVisualize
BU of 6l7u by Molmil
Crystal structure of FKRP in complex with Ba ion, Ba-SAD data
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, Fukutin-related protein, ...
著者Kuwabara, N.
登録日2019-11-03
公開日2020-01-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6L7T
DownloadVisualize
BU of 6l7t by Molmil
Crystal structure of FKRP in complex with Mg ion, Zinc low remote data
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fukutin-related protein, MAGNESIUM ION, ...
著者Kuwabara, N.
登録日2019-11-03
公開日2020-01-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6L7S
DownloadVisualize
BU of 6l7s by Molmil
Crystal structure of FKRP in complex with Mg ion, Zinc peak data
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fukutin-related protein, MAGNESIUM ION, ...
著者Kuwabara, N.
登録日2019-11-03
公開日2020-01-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6L7V
DownloadVisualize
BU of 6l7v by Molmil
Crystal structure of Cet1 from Trypanosoma cruzi in complex with tripolyphosphate, manganese and iodide ions.
分子名称: IODIDE ION, MANGANESE (II) ION, TRIPHOSPHATE, ...
著者Kuwabara, N, Ho, K.
登録日2019-11-03
公開日2020-06-03
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of the RNA triphosphatase fromTrypanosoma cruziprovide insights into how it recognizes the 5'-end of the RNA substrate.
J.Biol.Chem., 295, 2020
6L7X
DownloadVisualize
BU of 6l7x by Molmil
Crystal structure of Cet1 from Trypanosoma cruzi in complex with #951 ligand
分子名称: 1,3-dimethyl-7-propyl-purine-2,6-dione, SULFATE ION, mRNA_triPase domain-containing protein
著者Kuwabara, N, Ho, K.
登録日2019-11-03
公開日2020-06-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Crystal structures of the RNA triphosphatase fromTrypanosoma cruziprovide insights into how it recognizes the 5'-end of the RNA substrate.
J.Biol.Chem., 295, 2020

 

12>

219515

件を2024-05-08に公開中

PDB statisticsPDBj update infoContact PDBjnumon