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PDB: 2433 件

2Z1M
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Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5
分子名称: GDP-D-mannose dehydratase, GUANOSINE-5'-DIPHOSPHATE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Niwa, H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-09
公開日2007-11-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5
To be Published
2ZJB
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Crystal structure of the human Dmc1-M200V polymorphic variant
分子名称: Meiotic recombination protein DMC1/LIM15 homolog
著者Hikiba, J, Hirota, K, Kagawa, W, Ikawa, S, Kinebuchi, T, Sakane, I, Takizawa, Y, Yokoyama, S, Mandon-Pepin, B, Nicolas, A, Shibata, T, Ohta, K, Kurumizaka, H.
登録日2008-03-02
公開日2008-08-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural and functional analyses of the DMC1-M200V polymorphism found in the human population
Nucleic Acids Res., 36, 2008
2YWA
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Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
分子名称: Hypothetical protein TTHA0048
著者Kitamura, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-20
公開日2007-10-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
To be Published
2Z0X
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Crystal structure of ProX-CysSA complex from T. thermophilus
分子名称: 5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE, Putative uncharacterized protein TTHA1699
著者Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Crystal structure of ProX-CysSA complex from T. thermophilus
To be Published
1WKB
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Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation
分子名称: Leucyl-tRNA synthetase, SULFATE ION
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-30
公開日2005-02-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation
J.Mol.Biol., 346, 2005
2YZI
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Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii
分子名称: Hypothetical protein PH0107
著者Kanagawa, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-06
公開日2007-11-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii
To be Published
1WRB
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Crystal structure of the N-terminal RecA-like domain of DjVLGB, a pranarian Vasa-like RNA helicase
分子名称: DjVLGB, SULFATE ION
著者Kurimoto, K, Muto, Y, Obayashi, N, Terada, T, Shirouzu, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Kigawa, T, Okumura, H, Tanaka, A, Shibata, N, Kashikawa, M, Agata, K, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-10-14
公開日2005-04-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein
J.Struct.Biol., 150, 2005
2Z11
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Crystal structure of putative acetyltransferase
分子名称: Ribosomal-protein-alanine acetyltransferase
著者Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2007-11-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of putative acetyltransferase
To be Published
2Z0R
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Crystal structure of hypothetical protein TTHA0547
分子名称: CHLORIDE ION, Putative uncharacterized protein TTHA0547, SULFATE ION
著者Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2007-11-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of hypothetical protein TTHA0547
to be published
2YZT
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Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
分子名称: Putative uncharacterized protein TTHA1756
著者Ebihara, A, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-06
公開日2007-11-06
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of uncharacterized protein TTHA1756 from Thermus thermophilus HB8: Structural variety in UPF0150 family proteins.
Proteins, 71, 2008
1WLN
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Solution structure of the FHA domain of mouse Afadin 6
分子名称: Afadin
著者Hayashi, F, Hirata, Y, Guentert, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-06-28
公開日2005-07-12
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the FHA domain of mouse Afadin 6
TO BE PUBLISHED
1X0J
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Crystal structure analysis of the N-terminal bromodomain of human Brd2
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Bromodomain-containing protein 2
著者Nakamura, Y, Umehara, T, Shirouzu, M, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-03-23
公開日2006-06-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for acetylated histone H4 recognition by the human Brd2 bromodomain
To be Published
2ZCA
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Crystal Structure of TTHB189, a CRISPR-associated protein, Cse2 family from Thermus thermophilus HB8
分子名称: Putative uncharacterized protein TTHB189
著者Agari, Y, Shinkai, A, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-11-08
公開日2008-10-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8
Proteins, 73, 2008
2FLF
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Crystal structure of l-fuculose-1-phosphate aldolase from Thermus Thermophilus HB8
分子名称: fuculose-1-phosphate aldolase
著者Jeyakanthan, J, Yokoyama, S, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-01-06
公開日2007-01-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Purification, crystallization and preliminary X-ray crystallographic study of the L-fuculose-1-phosphate aldolase (FucA) from Thermus thermophilus HB8
Acta Crystallogr.,Sect.F, 61, 2005
2CWW
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Crystal structure of Thermus thermophilus TTHA1280, a putative SAM-dependent RNA methyltransferase, in complex with S-adenosyl-L-homocysteine
分子名称: ACETIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Pioszak, A.A, Murayama, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-27
公開日2005-10-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.
Acta Crystallogr.,Sect.F, 61, 2005
2CW9
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Crystal structure of human Tim44 C-terminal domain
分子名称: PENTAETHYLENE GLYCOL, translocase of inner mitochondrial membrane
著者Handa, N, Kishishita, S, Morita, S, Kinoshita, Y, Nagano, Y, Uda, H, Terada, T, Uchikubo, T, Takemoto, C, Jin, Z, Chrzas, J, Chen, L, Liu, Z.-J, Wang, B.-C, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-17
公開日2005-12-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of the human Tim44 C-terminal domain in complex with pentaethylene glycol: ligand-bound form.
Acta Crystallogr.,Sect.D, 63, 2007
3A5Y
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Crystal structure of GenX from Escherichia coli in complex with lysyladenylate analog
分子名称: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, Putative lysyl-tRNA synthetase
著者Sumida, T, Yanagisawa, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-08-17
公開日2010-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P.
Nat.Struct.Mol.Biol., 17, 2010
3A8Y
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Crystal structure of the complex between the BAG5 BD5 and Hsp70 NBD
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BAG family molecular chaperone regulator 5, Heat shock 70 kDa protein 1
著者Arakawa, A, Handa, N, Ohsawa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-10-13
公開日2010-03-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange
Structure, 18, 2010
2ZM6
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Crystal structure of the Thermus thermophilus 30S ribosomal subunit
分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Kaminishi, T, Wang, H, Kawazoe, M, Ishii, R, Schluenzen, F, Hanawa-Suetsugu, K, Wilson, D.N, Nomura, M, Takemoto, C, Shirouzu, M, Fucini, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-04-11
公開日2009-04-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structure of the Thermus thermophilus 30S ribosomal subunit
To be Published
2ZAD
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Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8
分子名称: DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, Muconate cycloisomerase, ...
著者Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-10-03
公開日2008-04-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8
To be Published
2ZDJ
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Crystal Structure of TTMA177, a Hypothetical Protein from Thermus thermophilus phage TMA
分子名称: hypothetical protein TTMA177
著者Agari, Y, Tamakoshi, M, Yamagishi, A, Shinkai, A, Ebihara, A, Yokoyama, S, Kuramitsu, S, Oshima, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-11-26
公開日2008-12-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of TTMA177, a Hypothetical Protein from Thermus thermophilus phage TMA
To be Published
2YXD
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Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating], SULFATE ION
著者Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-26
公開日2007-10-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)
To be Published
2YUM
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Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein
分子名称: Zinc finger ZZ-type-containing protein 3
著者Abe, H, Tochio, N, Miyamoto, K, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-06
公開日2007-10-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the Myb-like DNA-binding domain of human ZZZ3 protein
To be Published
3AL0
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Crystal structure of the glutamine transamidosome from Thermotoga maritima in the glutamylation state.
分子名称: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Glutamyl-tRNA(Gln) amidotransferase subunit A, Glutamyl-tRNA(Gln) amidotransferase subunit C,Linker,Glutamate--tRNA ligase 2, ...
著者Ito, T, Yokoyama, S.
登録日2010-07-19
公開日2010-09-29
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.368 Å)
主引用文献Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions.
Nature, 467, 2010
3AKZ
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Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with tRNAGln and a glutamyl-AMP analog
分子名称: Glutamyl-tRNA synthetase 2, O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE, tRNAGln
著者Ito, T, Yokoyama, S.
登録日2010-07-19
公開日2010-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions.
Nature, 467, 2010

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