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PDB: 46 件
3VHZ
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BU of 3vhz by Molmil
Crystal structure of the trans isomer of the L93A mutant of bacteriorhodopsin
分子名称: 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, Bacteriorhodopsin, ...
著者Kouyama, T, Zhang, J.
登録日2011-09-13
公開日2012-06-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin
Proteins, 80, 2012
4QRY
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BU of 4qry by Molmil
the ground state and the N intermediate of pharaonis halorhodopsin in complex with bromide ion
分子名称: 2,3-DI-PHYTANYL-GLYCEROL, BROMIDE ION, Halorhodopsin, ...
著者Kouyama, T, Kawaguchi, H.
登録日2014-07-02
公開日2015-06-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structures of the L1, L2, N, and O States of pharaonis Halorhodopsin
Biophys.J., 108, 2015
5B0W
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BU of 5b0w by Molmil
Crystal structure of the 11-cis isomer of pharaonis halorhodopsin in the absence of halide ions
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, BACTERIORUBERIN, Halorhodopsin, ...
著者Kouyama, T, Chan, S.K.
登録日2015-11-11
公開日2016-07-27
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States
Biochemistry, 55, 2016
4FBZ
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BU of 4fbz by Molmil
Crystal structure of deltarhodopsin from Haloterrigena thermotolerans
分子名称: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-PHYTANYL-GLYCEROL, BACTERIORUBERIN, ...
著者Kouyama, T.
登録日2012-05-23
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of deltarhodopsin-3 from Haloterrigena thermotolerans
Proteins, 81, 2013
4JR8
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BU of 4jr8 by Molmil
Crystal structure of cruxrhodopsin-3 from Haloarcula vallismortis at 2.3 angstrom resolution
分子名称: BACTERIORUBERIN, Cruxrhodopsin-3, RETINAL
著者Kouyama, T, Chan, S.K.
登録日2013-03-21
公開日2014-03-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis
Plos One, 9, 2014
4L35
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BU of 4l35 by Molmil
Crystal structure of cruxrhodopsin-3 at pH5 from Haloarcula vallismortis at 2.1 angstrom resolution
分子名称: BACTERIORUBERIN, Cruxrhodopsin-3, RETINAL
著者Kouyama, T, Chan, S.K.
登録日2013-06-05
公開日2014-06-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis
Plos One, 9, 2014
3VVK
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BU of 3vvk by Molmil
An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, AZIDE ION, BACTERIORUBERIN, ...
著者Kouyama, T, Nakanishi, T.
登録日2012-07-26
公開日2013-06-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Large deformation of helix F during the photoreaction cycle of Pharaonis halorhodopsin in complex with azide
Biophys.J., 104, 2013
3WQJ
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BU of 3wqj by Molmil
Crystal structure of archaerhodopsin-2 at 1.8 angstrom resolution
分子名称: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, ...
著者Kouyama, T.
登録日2014-01-27
公開日2014-10-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of archaerhodopsin-2 at 1.8 angstrom resolution.
Acta Crystallogr.,Sect.D, 70, 2014
1UCQ
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BU of 1ucq by Molmil
Crystal structure of the L intermediate of bacteriorhodopsin
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, RETINAL, ...
著者Kouyama, T, Nishikawa, T, Tokuhisa, T, Okumura, H.
登録日2003-04-17
公開日2003-12-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of the L Intermediate of Bacteriorhodopsin: Evidence for Vertical Translocation of a Water Molecule during the Proton Pumping Cycle.
J.Mol.Biol., 335, 2004
3VI0
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BU of 3vi0 by Molmil
Crystal structure of the O intermediate of the L93A mutant of bacteriorhodopsin
分子名称: 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, Bacteriorhodopsin, ...
著者Kouyama, T, Zhang, J.
登録日2011-09-13
公開日2012-06-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin
Proteins, 80, 2012
3QBI
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BU of 3qbi by Molmil
Crystal structure of an anion-free yellow form of pharaonis halorhodopsin
分子名称: BACTERIORUBERIN, Halorhodopsin, RETINAL, ...
著者Kouyama, T, Kanada, S.
登録日2011-01-13
公開日2011-08-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin
J.Mol.Biol., 413, 2011
3QBL
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BU of 3qbl by Molmil
Pharaonis halorhodopsin complexed with nitrate
分子名称: BACTERIORUBERIN, Halorhodopsin, NITRATE ION, ...
著者Kouyama, T, Kanada, S.
登録日2011-01-13
公開日2011-08-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of anion-free blue and yellow forms of pharaonis halorhodopsin
To be Published
3QBK
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BU of 3qbk by Molmil
Bromide-bound form of pharaonis halorhodopsin
分子名称: BACTERIORUBERIN, BROMIDE ION, Halorhodopsin, ...
著者Kouyama, T, Kanada, S.
登録日2011-01-13
公開日2011-08-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin
J.Mol.Biol., 413, 2011
3QBG
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BU of 3qbg by Molmil
Anion-free blue form of pharaonis halorhodopsin
分子名称: BACTERIORUBERIN, Halorhodopsin, RETINAL, ...
著者Kouyama, T, Kanada, S.
登録日2011-01-13
公開日2011-08-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin
J.Mol.Biol., 413, 2011
5ETZ
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BU of 5etz by Molmil
Structure of the all-trans isomer of pharaonis halorhodopsin in the absence of halide ions
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, BACTERIORUBERIN, Halorhodopsin, ...
著者Kouyama, T.
登録日2015-11-18
公開日2016-07-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States
Biochemistry, 55, 2016
1IW6
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BU of 1iw6 by Molmil
Crystal Structure of the Ground State of Bacteriorhodopsin
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, RETINAL, ...
著者Kouyama, T, Okumura, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-04-22
公開日2002-12-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Specific Damage Induced by X-ray Radiation and Structural Changes in the Primary Photoreaction of Bacteriorhodopsin.
J.Mol.Biol., 324, 2002
2EI4
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BU of 2ei4 by Molmil
Trimeric complex of archaerhodopsin-2
分子名称: 2,3-DI-PHYTANYL-GLYCEROL, Archaerhodopsin-2, BACTERIORUBERIN, ...
著者Kouyama, T.
登録日2007-03-11
公開日2008-01-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2
J.Mol.Biol., 375, 2008
2ZFW
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BU of 2zfw by Molmil
Crystal structure of Pex from Synechococcus sp. (strain PCC 7942) (Anacystis nidulans R2)
分子名称: Pex, SULFATE ION
著者Kouyama, T.
登録日2008-01-14
公開日2009-01-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Functionally important structural elements of the cyanobacterial clock-related protein Pex.
Genes Cells, 14, 2009
2ZFE
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BU of 2zfe by Molmil
Crystal structure of bacteriorhodopsin-xenon complex
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, ...
著者Kouyama, T.
登録日2007-12-31
公開日2008-11-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Effect of xenon binding to a hydrophobic cavity on the proton pumping cycle in bacteriorhodopsin
J.Mol.Biol., 384, 2008
2Z55
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BU of 2z55 by Molmil
Bacterioruberin in the trimeric structure of archaerhodopsin-2
分子名称: 2,3-DI-PHYTANYL-GLYCEROL, Archaerhodopsin-2, BACTERIORUBERIN, ...
著者Kouyama, T, Yoshimura, K.
登録日2007-06-28
公開日2008-01-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural role of bacterioruberin in the trimeric structure of archaerhodopsin-2
J.Mol.Biol., 375, 2008
3ABW
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BU of 3abw by Molmil
Crystal structure of pharaonis halorhodopsin in complex with azide ion
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, AZIDE ION, BACTERIORUBERIN, ...
著者Kouyama, T, Kanada, S.
登録日2009-12-24
公開日2011-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Binding mode of azide ion to pharaonis halorhodopsin
To be Published
3A7K
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BU of 3a7k by Molmil
Crystal structure of halorhodopsin from Natronomonas pharaonis
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
著者Kouyama, T.
登録日2009-09-27
公開日2009-12-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of the Light-Driven Chloride Pump Halorhodopsin from Natronomonas pharaonis.
J.Mol.Biol., 396, 2010
2E0C
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BU of 2e0c by Molmil
crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain7 at 2.0 A resolution
分子名称: 409aa long hypothetical NADP-dependent isocitrate dehydrogenase
著者Kouyama, T.
登録日2006-10-06
公開日2007-10-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structures of the Putative Isocitrate Dehydrogenase fromSulfolobus tokodaiiStrain 7 in the Apo and NADP+-Bound Forms.
Archaea, 2018, 2018
2E5M
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BU of 2e5m by Molmil
Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain 7
分子名称: 409aa long hypothetical NADP-dependent isocitrate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Kouyama, T, Kondo, H.
登録日2006-12-22
公開日2008-01-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structures of the Putative Isocitrate Dehydrogenase fromSulfolobus tokodaiiStrain 7 in the Apo and NADP+-Bound Forms.
Archaea, 2018, 2018
1VCR
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BU of 1vcr by Molmil
An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes
分子名称: CHLOROPHYLL A, CHLOROPHYLL B, Chlorophyll a-b binding protein AB80
著者Hino, T, Kanamori, E, Shen, J.-R, Kouyama, T.
登録日2004-03-10
公開日2004-03-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (9.5 Å)
主引用文献An icosahedral assembly of the light-harvesting chlorophyll a/b protein complex from pea chloroplast thylakoid membranes.
Acta Crystallogr.,Sect.D, 60, 2004

 

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