6NE9
 
 | | Bacteroides intestinalis acetyl xylan esterase (BACINT_01039) | | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | | Authors: | Koropatkin, N.M, Pereira, G.V, Cann, I. | | Deposit date: | 2018-12-17 | | Release date: | 2019-12-25 | | Last modified: | 2021-01-27 | | Method: | X-RAY DIFFRACTION (1.738 Å) | | Cite: | Degradation of complex arabinoxylans by human colonic Bacteroidetes
Nat Commun, 2021
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2PT2
 | | Structure of FutA1 with Iron(II) | | Descriptor: | 1,2-ETHANEDIOL, FE (II) ION, Iron transport protein, ... | | Authors: | Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J. | | Deposit date: | 2007-05-07 | | Release date: | 2007-07-10 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The structure of the iron-binding protein, FutA1, from Synechocystis 6803.
J.Biol.Chem., 282, 2007
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2PT1
 | | FutA1 Synechocystis PCC 6803 | | Descriptor: | Iron transport protein, SULFATE ION | | Authors: | Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J. | | Deposit date: | 2007-05-07 | | Release date: | 2007-07-10 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The structure of the iron-binding protein, FutA1, from Synechocystis 6803.
J.Biol.Chem., 282, 2007
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5CK1
 | | selenomethionine BT4246 | | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, SusD homolog | | Authors: | Koropatkin, N.M. | | Deposit date: | 2015-07-15 | | Release date: | 2016-10-12 | | Method: | X-RAY DIFFRACTION (1.835 Å) | | Cite: | Mechanistic insight into mucin degradation by the human gut microbiota reveals targeting of the glycoprotein core
to be published
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5CK0
 | | BT4246 | | Descriptor: | NICKEL (II) ION, POTASSIUM ION, SusD homolog | | Authors: | Koropatkin, N.M. | | Deposit date: | 2015-07-15 | | Release date: | 2016-10-12 | | Last modified: | 2024-05-01 | | Method: | X-RAY DIFFRACTION (1.996 Å) | | Cite: | Mechanistic insight into mucin degradation by the human gut microbiota reveals targeting of the glycoprotein core
to be published
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5CJZ
 | | BT4246 with galactose | | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, CESIUM ION, ... | | Authors: | Koropatkin, N.M. | | Deposit date: | 2015-07-15 | | Release date: | 2016-10-12 | | Last modified: | 2024-01-10 | | Method: | X-RAY DIFFRACTION (1.803 Å) | | Cite: | Mechanistic insight into mucin degradation by the human gut microbiota reveals targeting of the glycoprotein core
to be published
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2I4B
 | | Crystal structure of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803 in complex with bicarbonate and calcium | | Descriptor: | BICARBONATE ION, Bicarbonate transporter, CALCIUM ION | | Authors: | Koropatkin, N.M, Smith, T.J, Pakrasi, H.B. | | Deposit date: | 2006-08-21 | | Release date: | 2006-12-19 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.35 Å) | | Cite: | The Structure of a Cyanobacterial Bicarbonate Transport Protein, CmpA.
J.Biol.Chem., 282, 2007
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2I48
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2I49
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2I4C
 | | Crystal structure of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803 in complex with bicarbonate and calcium | | Descriptor: | BICARBONATE ION, Bicarbonate transporter, CALCIUM ION | | Authors: | Koropatkin, N.M, Smith, T.J, Pakrasi, H.B. | | Deposit date: | 2006-08-21 | | Release date: | 2006-12-19 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | The Structure of a Cyanobacterial Bicarbonate Transport Protein, CmpA.
J.Biol.Chem., 282, 2007
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7LSA
 | | Ruminococcus bromii Amy12 with maltoheptaose | | Descriptor: | CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... | | Authors: | Koropatkin, N.M, Cockburn, D.W, Brown, H.A, Kibler, R.D. | | Deposit date: | 2021-02-18 | | Release date: | 2021-07-14 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (1.76 Å) | | Cite: | Structure and substrate recognition by the Ruminococcus bromii amylosome pullulanases.
J.Struct.Biol., 213, 2021
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7LST
 | | Ruminococcus bromii Amy12-D392A with 63-a-D-glucosyl-maltotriosyl-maltotriose | | Descriptor: | ACETATE ION, CALCIUM ION, GLYCEROL, ... | | Authors: | Koropatkin, N.M, Cockburn, D.W, Brown, H.A, Kibler, R.D. | | Deposit date: | 2021-02-18 | | Release date: | 2021-07-14 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (2.05 Å) | | Cite: | Structure and substrate recognition by the Ruminococcus bromii amylosome pullulanases.
J.Struct.Biol., 213, 2021
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7LSU
 | | Ruminococcus bromii Amy12-D392A with 63-a-D-glucosyl-maltotriose | | Descriptor: | ACETATE ION, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... | | Authors: | Koropatkin, N.M, Cockburn, D.W, Brown, H.A, Kibler, R.D. | | Deposit date: | 2021-02-18 | | Release date: | 2021-07-14 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Structure and substrate recognition by the Ruminococcus bromii amylosome pullulanases.
J.Struct.Biol., 213, 2021
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7LSR
 | | Ruminococcus bromii Amy12-D392A with maltoheptaose | | Descriptor: | CALCIUM ION, GLYCEROL, Pullulanase, ... | | Authors: | Koropatkin, N.M, Cockburn, D.W, Brown, H.A, Kibler, R.D. | | Deposit date: | 2021-02-18 | | Release date: | 2021-07-14 | | Last modified: | 2023-10-18 | | Method: | X-RAY DIFFRACTION (2.42 Å) | | Cite: | Structure and substrate recognition by the Ruminococcus bromii amylosome pullulanases.
J.Struct.Biol., 213, 2021
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3CKC
 | | B. thetaiotaomicron SusD | | Descriptor: | 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ... | | Authors: | Koropatkin, N.M, Martens, E.C, Gordon, J.I, Smith, T.J. | | Deposit date: | 2008-03-14 | | Release date: | 2008-04-01 | | Last modified: | 2017-10-25 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices.
Structure, 16, 2008
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3CKB
 | | B. thetaiotaomicron SusD with maltotriose | | Descriptor: | CALCIUM ION, SusD, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | | Authors: | Koropatkin, N.M, Martens, E.C, Gordon, J.I, Smith, T.J. | | Deposit date: | 2008-03-14 | | Release date: | 2008-04-01 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices.
Structure, 16, 2008
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3CK7
 | | B. thetaiotaomicron SusD with alpha-cyclodextrin | | Descriptor: | CALCIUM ION, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), SusD | | Authors: | Koropatkin, N.M, Martens, E.C, Gordon, J.I, Smith, T.J. | | Deposit date: | 2008-03-14 | | Release date: | 2008-04-01 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices.
Structure, 16, 2008
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3CK8
 | | B. thetaiotaomicron SusD with beta-cyclodextrin | | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ... | | Authors: | Koropatkin, N.M, Martens, E.C, Gordon, J.I, Smith, T.J. | | Deposit date: | 2008-03-14 | | Release date: | 2008-04-01 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices.
Structure, 16, 2008
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3CK9
 | | B. thetaiotaomicron SusD with maltoheptaose | | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, SusD, ... | | Authors: | Koropatkin, N.M, Martens, E.C, Gordon, J.I, Smith, T.J. | | Deposit date: | 2008-03-14 | | Release date: | 2008-05-20 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices.
Structure, 16, 2008
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3F11
 | | Structure of futa1 with iron(III) | | Descriptor: | 1,2-ETHANEDIOL, FE (III) ION, Iron transport protein, ... | | Authors: | Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J. | | Deposit date: | 2008-10-27 | | Release date: | 2008-11-25 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The structure of the iron-binding protein, FutA1, from Synechocystis 6803
J.Biol.Chem., 282, 2007
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6BS6
 | | SusG with mixed linkage amylosaccharide | | Descriptor: | ACETATE ION, Alpha-amylase SusG, CALCIUM ION, ... | | Authors: | Koropatkin, N.M, Cockburn, D.W. | | Deposit date: | 2017-12-01 | | Release date: | 2018-01-24 | | Last modified: | 2023-10-04 | | Method: | X-RAY DIFFRACTION (2.17 Å) | | Cite: | Structural basis for the flexible recognition of alpha-glucan substrates by Bacteroides thetaiotaomicron SusG.
Protein Sci., 27, 2018
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6DHT
 | | Bacteroides ovatus GH9 Bacova_02649 | | Descriptor: | 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... | | Authors: | Koropatkin, N.M, Foley, M.H. | | Deposit date: | 2018-05-21 | | Release date: | 2019-04-03 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.42 Å) | | Cite: | A Cell-Surface GH9 Endo-Glucanase Coordinates with Surface Glycan-Binding Proteins to Mediate Xyloglucan Uptake in the Gut Symbiont Bacteroides ovatus.
J. Mol. Biol., 431, 2019
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6DK2
 | | Bacteroidetes AC2a SusD-like | | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ... | | Authors: | Koropatkin, N.M. | | Deposit date: | 2018-05-28 | | Release date: | 2018-08-01 | | Last modified: | 2023-10-11 | | Method: | X-RAY DIFFRACTION (2.02 Å) | | Cite: | To Be Published
To Be Published
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6DMF
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6E57
 | | Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-B in complex with mixed-linkage heptasaccharide | | Descriptor: | 1,2-ETHANEDIOL, PHOSPHATE ION, SODIUM ION, ... | | Authors: | Koropatkin, N.M, Schnizlein, M, Bahr, C.M.E. | | Deposit date: | 2018-07-19 | | Release date: | 2019-05-29 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.71 Å) | | Cite: | Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Cell.Mol.Life Sci., 76, 2019
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