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PDB: 72 件
3VN3
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BU of 3vn3 by Molmil
Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix
分子名称: 1,2-ETHANEDIOL, Antifreeze protein
著者Kondo, H, Xiao, N, Hanada, Y, Sugimoto, H, Hoshino, T, Garnham, C.P, Davies, P.L, Tsuda, S.
登録日2011-12-21
公開日2012-06-06
最終更新日2013-07-17
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation
Proc.Natl.Acad.Sci.USA, 109, 2012
2YQU
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BU of 2yqu by Molmil
Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus
分子名称: 2-oxoglutarate dehydrogenase E3 component, CARBONATE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Kondo, H, Hossain, M.T, Adachi, W, Nakai, T, Kamiya, N, Kuramitsu, K.
登録日2007-03-31
公開日2008-04-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(E3s) from Thermus thermophilus
To be Published
7C3H
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BU of 7c3h by Molmil
Structure of L-lysine oxidase in complex with L-lysine
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Kondo, H, Kitagawa, M, Sugiyama, S, Imada, K.
登録日2020-05-12
公開日2020-09-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of strict substrate recognition of l-lysine alpha-oxidase from Trichoderma viride.
Protein Sci., 29, 2020
1J05
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BU of 1j05 by Molmil
The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
分子名称: GLYCEROL, PHOSPHATE ION, anti-CEA mAb T84.66, ...
著者Kondo, H, Nishimura, Y, Shiroishi, M, Asano, R, Noro, N, Tsumoto, K, Kumagai, I.
登録日2002-11-01
公開日2003-12-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
To be Published
6A8K
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BU of 6a8k by Molmil
Crystal structure of Ice-binding Protein from a Sea-Ice Microalga
分子名称: GLYCEROL, Ice binding protein 1
著者Kondo, H, Bayer-Giraldi, M.
登録日2018-07-09
公開日2018-11-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Multiple binding modes of a moderate ice-binding protein from a polar microalga
Phys Chem Chem Phys, 20, 2018
2DCZ
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BU of 2dcz by Molmil
Thermal Stabilization of Bacillus subtilis Family-11 Xylanase By Directed Evolution
分子名称: 1,4-DIETHYLENE DIOXIDE, Endo-1,4-beta-xylanase A, SULFATE ION
著者Kondo, H, Miyazaki, K, Takenouchi, M, Noro, N, Suzuki, M, Tsuda, S.
登録日2006-01-18
公開日2006-02-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
2DCY
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BU of 2dcy by Molmil
Crystal structure of Bacillus subtilis family-11 xylanase
分子名称: 1,4-DIETHYLENE DIOXIDE, D(-)-TARTARIC ACID, Endo-1,4-beta-xylanase A, ...
著者Kondo, H, Miyazaki, K, Takenouchi, M, Noro, N, Suzuki, M, Tsuda, S.
登録日2006-01-18
公開日2006-02-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution
J.Biol.Chem., 281, 2006
2DHT
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BU of 2dht by Molmil
Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain7
分子名称: 409aa long hypothetical NADP-dependent isocitrate dehydrogenase
著者Kondo, H, Murakami, M, Ihara, K, Suzuki, S, Kouyama, T.
登録日2006-03-25
公開日2007-03-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of isocitrate dehydrogenase of Sulfolobus tokodaii strain7
To be Published
1ODD
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BU of 1odd by Molmil
OMPR C-TERMINAL DOMAIN (OMPR-C) FROM ESCHERICHIA COLI
分子名称: TRANSCRIPTIONAL REGULATORY PROTEIN OMPR
著者Kondou, H, Nakagawa, A, Tanaka, I.
登録日1996-10-31
公開日1997-05-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site.
Nat.Struct.Biol., 4, 1997
7DC5
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BU of 7dc5 by Molmil
Crystal structure of fungal antifreeze protein with intermediate activity
分子名称: Antifreeze protein, SULFATE ION
著者Khan, N.M.M.U, Arai, T, Tsuda, S, Kondo, H.
登録日2020-10-23
公開日2021-10-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.
Sci Rep, 11, 2021
7DDB
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BU of 7ddb by Molmil
Crystal structure of fungal antifreeze protein with intermediate activity
分子名称: Antifreeze protein, MAGNESIUM ION
著者Khan, N.M.M.U, Arai, T, Tsuda, S, Kondo, H.
登録日2020-10-28
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.
Sci Rep, 11, 2021
2J2M
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BU of 2j2m by Molmil
Crystal Structure Analysis of Catalase from Exiguobacterium oxidotolerans
分子名称: CATALASE, PROTOPORPHYRIN IX CONTAINING FE
著者Hara, I, Ichise, N, Kojima, K, Kondo, H, Ohgiya, S, Matsuyama, H, Yumoto, I.
登録日2006-08-17
公開日2007-01-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Relationship between the Size of the Bottleneck 15 a from Iron in the Main Channel and the Reactivity of Catalase Corresponding to the Molecular Size of Substrates.
Biochemistry, 46, 2007
1E32
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BU of 1e32 by Molmil
Structure of the N-Terminal domain and the D1 AAA domain of membrane fusion ATPase p97
分子名称: ADENOSINE-5'-DIPHOSPHATE, P97
著者Zhang, X, Shaw, A, Bates, P.A, Gorman, M.A, Kondo, H, Dokurno, P, Leonard M, G, Sternberg, J.E, Freemont, P.S.
登録日2000-06-05
公開日2001-05-31
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of the Aaa ATPase P97
Mol.Cell, 6, 2000
1X0U
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BU of 1x0u by Molmil
Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii
分子名称: hypothetical methylmalonyl-CoA decarboxylase alpha subunit
著者Kakuta, Y, Sueda, S, Kondo, H.
登録日2005-03-29
公開日2006-07-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii
To be Published
1WT5
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BU of 1wt5 by Molmil
The Crystal Structure Of A Humanized Antibody Fv 528
分子名称: ANTI EGFR ANTIBODY FV REGION
著者Makabe, K, Tsumoto, K, Asano, R, Kondo, H, Kumagai, I.
登録日2004-11-16
公開日2005-05-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
1ULZ
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BU of 1ulz by Molmil
Crystal structure of the biotin carboxylase subunit of pyruvate carboxylase
分子名称: pyruvate carboxylase n-terminal domain
著者Kondo, S, Nakajima, Y, Sugio, S, Yong-Biao, J, Sueda, S, Kondo, H.
登録日2003-09-18
公開日2004-03-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the biotin carboxylase subunit of pyruvate carboxylase from Aquifex aeolicus at 2.2 A resolution.
Acta Crystallogr.,Sect.D, 60, 2004
2YSS
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BU of 2yss by Molmil
Crystal structure of Humanized HYHEL-10 FV mutant(HQ39KW47Y)-HEN lysozyme complex
分子名称: ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
著者Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
登録日2007-04-03
公開日2008-04-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
3W3D
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BU of 3w3d by Molmil
Crystal structure of smooth muscle G actin DNase I complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, gamma-enteric smooth muscle, ...
著者Sakabe, N, Sakabe, K, Sasaki, K, Kondo, H, Shimomur, M.
登録日2012-12-20
公開日2013-01-30
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution
Acta Crystallogr.,Sect.A, 49, 1993
1C08
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BU of 1c08 by Molmil
CRYSTAL STRUCTURE OF HYHEL-10 FV-HEN LYSOZYME COMPLEX
分子名称: ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10), LYSOZYME
著者Shiroishi, M, Kondo, H, Matsushima, M, Tsumoto, K, Kumagai, I.
登録日1999-07-15
公開日2000-07-19
最終更新日2023-05-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces.
J.Biol.Chem., 274, 1999
3X0V
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BU of 3x0v by Molmil
Structure of L-lysine oxidase
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, L-lysine oxidase
著者Sano, T, Uchida, Y, Amano, M, Kawaguchi, T, Kondo, H, Inagaki, K, Imada, K.
登録日2014-10-22
公開日2015-04-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Recombinant expression, molecular characterization and crystal structure of antitumor enzyme, l-lysine alpha-oxidase from Trichoderma viride.
J.Biochem., 157, 2015
2DZD
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BU of 2dzd by Molmil
Crystal structure of the biotin carboxylase domain of pyruvate carboxylase
分子名称: pyruvate carboxylase
著者Kondo, S, Nakajima, Y, Sugio, S, Sueda, S, Islam, M.N, Kondo, H.
登録日2006-09-27
公開日2007-09-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the biotin carboxylase domain of pyruvate carboxylase from Bacillus thermodenitrificans
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
7BWX
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BU of 7bwx by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
分子名称: GLYCEROL, Ice-binding protein isoform1a, SULFATE ION
著者Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
登録日2020-04-16
公開日2020-05-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.904 Å)
主引用文献An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
7BWY
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BU of 7bwy by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
分子名称: GLYCEROL, Ice-binding protein isoform1a
著者Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
登録日2020-04-16
公開日2020-05-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
5B5H
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BU of 5b5h by Molmil
Hydrophobic ice-binding site confer hyperactivity on antifreeze protein from a snow mold fungus
分子名称: Antifreeze protein, SODIUM ION, SULFATE ION
著者Cheng, J, Hanada, Y, Miura, A, Tsuda, S, Kondo, H.
登録日2016-05-06
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Hydrophobic ice-binding sites confer hyperactivity of an antifreeze protein from a snow mold fungus.
Biochem.J., 473, 2016
5AYU
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BU of 5ayu by Molmil
Crystal structure of HyHEL-10 Fv
分子名称: GLYCEROL, Ig VH,anti-lysozyme, lysozyme binding Ig kappa chain V23-J2 region
著者Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
登録日2015-09-04
公開日2016-09-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of HyHEL-10 Fv
To Be Published

 

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