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PDB: 22 results

2D73
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BU of 2d73 by Molmil
Crystal Structure Analysis of SusB
Descriptor: CALCIUM ION, alpha-glucosidase SusB
Authors:Kitamura, M, Yao, M.
Deposit date:2005-11-15
Release date:2007-02-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
8ITO
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BU of 8ito by Molmil
Crystal structure of FeRlp from Desulfovibrio vulgaris (Hildenborough)
Descriptor: FE (III) ION, PHOSPHATE ION, Rubredoxin
Authors:Nakatsuji, T, Ogata, H, Kitamura, M.
Deposit date:2023-03-22
Release date:2024-03-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of FeRlp from Desulfovibrio vulgaris (Hildenborough)
To Be Published
1FLM
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BU of 1flm by Molmil
DIMER OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Descriptor: FLAVIN MONONUCLEOTIDE, PROTEIN (FMN-BINDING PROTEIN)
Authors:Suto, K, Kawagoe, K, Shibata, N, Morimoto, K, Higuchi, Y, Kitamura, M, Nakaya, T, Yasuoka, N.
Deposit date:1999-03-10
Release date:2000-03-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:How do the x-ray structure and the NMR structure of FMN-binding protein differ?
Acta Crystallogr.,Sect.D, 56, 2000
7EG5
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BU of 7eg5 by Molmil
FMN-bound form of YviC from Lactococcus lactis subsp. lactis Il1403
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Sugiura, N, Nakanishi, T, Kitamura, M.
Deposit date:2021-03-24
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:FMN-bound form of YviC from Lactococcus lactis subsp. lactis Il1403
To Be Published
5B37
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BU of 5b37 by Molmil
Crystal structure of L-tryptophan dehydrogenase from Nostoc punctiforme
Descriptor: Tryptophan dehydrogenase
Authors:Wakamatsu, T, Sakuraba, H, Kitamura, M, Hakumai, Y, Ohnishi, K, Ashiuchi, M, Ohshima, T.
Deposit date:2016-02-11
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural Insights into l-Tryptophan Dehydrogenase from a Photoautotrophic Cyanobacterium, Nostoc punctiforme.
Appl. Environ. Microbiol., 83, 2017
5B3K
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BU of 5b3k by Molmil
C101A mutant of Flavodoxin from Pseudomonas aeruginosa
Descriptor: SULFATE ION, Uncharacterized protein PA3435
Authors:Okada, D, Nakanishi, T, Kitamura, M.
Deposit date:2016-03-03
Release date:2017-03-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:C101A mutant of Flavodoxin from Pseudomonas aeruginosa
To Be Published
5B3L
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BU of 5b3l by Molmil
C101S mutant of Flavodoxin from Pseudomonas aeruginosa
Descriptor: SULFATE ION, Uncharacterized protein PA3435
Authors:Okada, D, Nakanishi, T, Kitamura, M.
Deposit date:2016-03-04
Release date:2017-03-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:C101S mutant of Flavodoxin from Pseudomonas aeruginosa
To Be Published
1WE5
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BU of 1we5 by Molmil
Crystal Structure of Alpha-Xylosidase from Escherichia coli
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Putative family 31 glucosidase yicI
Authors:Ose, T, Kitamura, M, Okuyama, M, Mori, H, Kimura, A, Watanabe, N, Yao, M, Tanaka, I.
Deposit date:2004-05-24
Release date:2005-02-15
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Alpha-Xylosidase from Escherichia coli
TO BE PUBLISHED
2CVC
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BU of 2cvc by Molmil
Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Hildenborough)
Descriptor: HEME C, High-molecular-weight cytochrome c precursor
Authors:Suto, K, Sato, M, Shibata, N, Kitamura, M, Morimoto, Y, Takayama, Y, Ozawa, K, Akutsu, H, Higuchi, Y, Yasuoka, N.
Deposit date:2005-06-02
Release date:2006-06-06
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of High-Molecular Weight Cytochrome c
To be Published
2E84
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BU of 2e84 by Molmil
Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion
Descriptor: High-molecular-weight cytochrome c, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
Authors:Shibata, N, Suto, K, Sato, M, Morimoto, Y, Kitamura, M, Higuchi, Y.
Deposit date:2007-01-17
Release date:2008-01-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3A24
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BU of 3a24 by Molmil
Crystal structure of BT1871 retaining glycosidase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, alpha-galactosidase
Authors:Okuyama, M, Kitamura, M, Hondoh, H, Tanaka, I, Yao, M.
Deposit date:2009-04-28
Release date:2009-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Catalytic mechanism of retaining alpha-galactosidase belonging to glycoside hydrolase family 97.
J.Mol.Biol., 392, 2009
3W8Q
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BU of 3w8q by Molmil
Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1)
Descriptor: Dual specificity mitogen-activated protein kinase kinase 1, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Nakae, S, Kitamura, M, Shirai, T, Tada, T.
Deposit date:2013-03-20
Release date:2014-03-26
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of mitogen-activated protein kinase kinase 1 in the DFG-out conformation.
Acta Crystallogr.,Sect.F, 77, 2021
2ZQ0
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BU of 2zq0 by Molmil
Crystal structure of SusB complexed with acarbose
Descriptor: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase (Alpha-glucosidase SusB), CALCIUM ION
Authors:Yao, M, Tanaka, I, Kitamura, M.
Deposit date:2008-07-31
Release date:2008-10-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
3VY2
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BU of 3vy2 by Molmil
N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Takagi, R, Nakanishi, T, Kitamura, M.
Deposit date:2012-09-21
Release date:2013-09-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3VQT
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BU of 3vqt by Molmil
Crystal structure analysis of the translation factor RF3
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Peptide chain release factor 3
Authors:Kihira, K, Shomura, Y, Shibata, N, Kitamura, M, Higuchi, Y.
Deposit date:2012-03-30
Release date:2012-09-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure analysis of the translation factor RF3 (release factor 3)
Febs Lett., 586, 2012
3VR1
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BU of 3vr1 by Molmil
Crystal structure analysis of the translation factor RF3
Descriptor: GUANOSINE-5',3'-TETRAPHOSPHATE, Peptide chain release factor 3
Authors:Kihira, K, Shomura, Y, Shibata, N, Kitamura, M, Higuchi, Y.
Deposit date:2012-04-03
Release date:2012-09-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure analysis of the translation factor RF3 (release factor 3)
Febs Lett., 586, 2012
3A6R
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BU of 3a6r by Molmil
E13Q mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Nakanishi, T, Haruyama, Y, Inoue, H, Kitamura, M.
Deposit date:2009-09-08
Release date:2010-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein.
J.Phys.Chem.B, 114, 2010
3VYA
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BU of 3vya by Molmil
W32Y mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Takagi, R, Nakanishi, T, Kitamura, M.
Deposit date:2012-09-22
Release date:2013-09-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of W32Y mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3VY5
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BU of 3vy5 by Molmil
N33Q mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Takagi, R, Nakanishi, T, Kitamura, M.
Deposit date:2012-09-21
Release date:2013-09-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of N33Q mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3A6Q
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BU of 3a6q by Molmil
E13T mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Nakanishi, T, Haruyama, Y, Inoue, H, Kitamura, M.
Deposit date:2009-09-08
Release date:2010-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein.
J.Phys.Chem.B, 114, 2010
3AWH
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BU of 3awh by Molmil
E13K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Sato, S, Nakanishi, T, Inoue, H, Kitamura, M.
Deposit date:2011-03-22
Release date:2012-04-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of E13K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published
3AMF
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BU of 3amf by Molmil
E13R mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, FMN-binding protein
Authors:Sato, S, Nakanishi, T, Inoue, H, Kitamura, M.
Deposit date:2010-08-19
Release date:2011-10-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of E13R mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
To be Published

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