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PDB: 230 件
1Q03
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BU of 1q03 by Molmil
Crystal structure of FGF-1, S50G/V51G mutant
分子名称: Heparin-binding growth factor 1
著者Kim, J, Blaber, M.
登録日2003-07-15
公開日2004-07-27
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Sequence swapping does not result in conformation swapping for the beta4/beta5 and beta8/beta9 beta-hairpin turns in human acidic fibroblast growth factor
Protein Sci., 14, 2005
5ZW3
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BU of 5zw3 by Molmil
Crystal Structure of TrmR from B. subtilis
分子名称: MAGNESIUM ION, Putative O-methyltransferase YrrM, S-ADENOSYL-L-HOMOCYSTEINE
著者Kim, J, Ryu, H, Almo, S.C.
登録日2018-05-14
公開日2018-07-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.
Nucleic Acids Res., 46, 2018
5ZW4
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BU of 5zw4 by Molmil
Crystal structure of tRNA bound TrmR
分子名称: PHOSPHATE ION, Putative O-methyltransferase YrrM, RNA (5'-R(*CP*CP*UP*GP*CP*UP*UP*UP*GP*CP*AP*CP*GP*CP*AP*GP*G)-3'), ...
著者Kim, J, Ryu, H, Almo, S.C.
登録日2018-05-14
公開日2018-07-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.
Nucleic Acids Res., 46, 2018
3OCQ
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BU of 3ocq by Molmil
crystal structure of tRNA-specific Adenosine deaminase from Salmonella enterica
分子名称: Putative Cytosine/adenosine deaminase, ZINC ION
著者Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2010-08-10
公開日2010-08-18
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structure of tRNA-specific Adenosine deaminase from Salmonella enterica
To be Published
3ODG
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BU of 3odg by Molmil
crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis
分子名称: CHLORIDE ION, XANTHINE, Xanthosine phosphorylase
著者Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2010-08-11
公開日2010-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis
To be Published
3OF3
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BU of 3of3 by Molmil
Crystal structure of PNP with an inhibitor DADME_immH from Vibrio cholerae
分子名称: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type 1
著者Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2010-08-13
公開日2010-09-01
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Crystal structure of PNP with an inhibitor DADME_immH from Vibrio cholerae
To be Published
3OCC
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BU of 3occ by Molmil
Crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis
分子名称: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type
著者Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2010-08-09
公開日2010-11-10
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis
To be Published
3OHP
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BU of 3ohp by Molmil
Crystal structure of HGPRT from Vibrio cholerae
分子名称: Hypoxanthine phosphoribosyltransferase
著者Kim, J, Ramagopal, U.A, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2010-08-17
公開日2010-09-01
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Crystal structure of HGPRT from Vibrio cholerae
To be Published
3PVC
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BU of 3pvc by Molmil
Crystal structure of apo MnmC from Yersinia Pestis
分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC
著者Kim, J, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
登録日2010-12-06
公開日2011-04-13
最終更新日2013-12-25
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC.
Bmc Struct.Biol., 13, 2013
3PS9
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BU of 3ps9 by Molmil
Crystal structure of MnmC from E. coli
分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, S-ADENOSYLMETHIONINE, ...
著者Kim, J, Almo, S.C.
登録日2010-12-01
公開日2010-12-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC.
Bmc Struct.Biol., 13, 2013
3SGL
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BU of 3sgl by Molmil
The crystal structure of MnmC from Yersinia pestis bound with FAD and SAM
分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, S-ADENOSYLMETHIONINE, ...
著者Kim, J, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
登録日2011-06-15
公開日2011-07-06
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC.
Bmc Struct.Biol., 13, 2013
2O4M
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BU of 2o4m by Molmil
Structure of Phosphotriesterase mutant I106G/F132G/H257Y
分子名称: ACETIC ACID, CACODYLATE ION, GLYCEROL, ...
著者Kim, J, Ramagopal, U.A, Tsai, P, Raushel, F.M, Almo, S.C.
登録日2006-12-04
公開日2007-12-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structure of Phosphotriesterase mutant I106G/F132G/H257Y
To be Published
2OB3
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BU of 2ob3 by Molmil
Structure of Phosphotriesterase mutant H257Y/L303T
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Parathion hydrolase, ZINC ION
著者Kim, J, Ramagopal, U.A, Tsai, P, Raushel, F.M, Almo, S.C.
登録日2006-12-18
公開日2007-01-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Structure of Phosphotriesterase mutant H257Y/L303T
To be Published
2O4Q
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BU of 2o4q by Molmil
Structure of Phosphotriesterase mutant G60A
分子名称: CACODYLATE ION, Parathion hydrolase, ZINC ION
著者Kim, J, Ramagopal, U.A, Tsai, P.C, Raushel, F.M, Almo, S.C.
登録日2006-12-04
公開日2007-12-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structure of diethyl phosphate bound to the binuclear metal center of phosphotriesterase.
Biochemistry, 47, 2008
2OQL
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BU of 2oql by Molmil
Structure of Phosphotriesterase mutant H254Q/H257F
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Parathion hydrolase, ...
著者Kim, J, Tsai, P, Raushel, F.M, Almo, S.C.
登録日2007-01-31
公開日2008-02-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of PTE mutant H254Q/H257F
To be Published
3RCM
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BU of 3rcm by Molmil
crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida
分子名称: ACETATE ION, CITRIC ACID, TatD family hydrolase, ...
著者Kim, J, Toro, R, Hillerich, B, Seidel, R.D, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2011-03-31
公開日2011-04-20
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida
TO BE PUBLISHED
1K5U
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BU of 1k5u by Molmil
Human acidic fibroblast growth factor. 141 amino acid form with amino terminal His tag with His93 replaced by Gly (H93G).
分子名称: Acidic fibroblast growth factor, SULFATE ION
著者Kim, J, Blaber, S.I, Blaber, M.
登録日2001-10-12
公開日2002-02-27
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Alternative type I and I' turn conformations in the beta8/beta9 beta-hairpin of human acidic fibroblast growth factor.
Protein Sci., 11, 2002
1K5V
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BU of 1k5v by Molmil
Human acidic fibroblast growth factor. 141 amino acid form with amino terminal His tag with Asn106 replaced by Gly (N106G).
分子名称: Acidic fibroblast growth factor, SULFATE ION
著者Kim, J, Blaber, S.I, Blaber, M.
登録日2001-10-12
公開日2002-02-27
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Alternative type I and I' turn conformations in the beta8/beta9 beta-hairpin of human acidic fibroblast growth factor.
Protein Sci., 11, 2002
7CT9
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BU of 7ct9 by Molmil
Crystal structure of SAH bound CmoB from Vibrio Vulnificus
分子名称: MALONATE ION, PHOSPHATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Kim, J, Jeong, S.
登録日2020-08-18
公開日2021-03-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
7CT8
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BU of 7ct8 by Molmil
Crystal structure of apo CmoB from Vibrio Vulnificus
分子名称: tRNA U34 carboxymethyltransferase
著者Kim, J, Jeong, S.
登録日2020-08-18
公開日2021-03-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
7CTA
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BU of 7cta by Molmil
Crystal structure of Cx-SAM bound CmoB from Vibrio vulnificus
分子名称: (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate, SULFATE ION, tRNA U34 carboxymethyltransferase
著者Kim, J, Jeong, S.
登録日2020-08-18
公開日2021-03-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
7CNX
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BU of 7cnx by Molmil
Crystal structure of Apo PSD from E. coli (2.63 A)
分子名称: Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Kim, J, Cho, G.
登録日2020-08-03
公開日2021-03-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
7CNY
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BU of 7cny by Molmil
Crystal structure of 8PE bound PSD from E. coli (2.12 A)
分子名称: 1,2-Dioctanoyl-SN-Glycero-3-Phosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, ...
著者Kim, J, Cho, G.
登録日2020-08-03
公開日2021-03-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
7CNZ
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BU of 7cnz by Molmil
Crystal structure of 10PE bound PSD from E. coli (2.70 A)
分子名称: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, PHOSPHATE ION, Phosphatidylserine decarboxylase alpha chain, ...
著者Kim, J, Cho, G.
登録日2020-08-03
公開日2021-03-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
7CNW
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BU of 7cnw by Molmil
Crystal structure of Apo PSD from E. coli (1.90 A)
分子名称: DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain, ...
著者Kim, J, Cho, G.
登録日2020-08-03
公開日2021-03-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021

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