8F2U
| Human CCC complex | 分子名称: | COMM domain-containing protein 1, COMM domain-containing protein 10, COMM domain-containing protein 2, ... | 著者 | Healy, M.D, McNally, K.E, Butkovic, R, Chilton, M, Kato, K, Sacharz, J, McConville, C, Moody, E.R.R, Shaw, S, Planelles-Herrero, V.J, Kadapalakere, S.Y, Ross, J, Borucu, U, Palmer, C.S, Chen, K, Croll, T.I, Hall, R.J, Caruana, N.J, Ghai, R, Nguyen, T.H.D, Heesom, K.J, Saitoh, S, Berger, I, Berger-Schaffitzel, C, Williams, T.A, Stroud, D.A, Derivery, E, Collins, B.M, Cullen, P.J. | 登録日 | 2022-11-08 | 公開日 | 2023-05-24 | 実験手法 | ELECTRON MICROSCOPY (3.53 Å) | 主引用文献 | Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome. Cell, 186, 2023
|
|
8F2R
| Human CCC complex | 分子名称: | COMM domain-containing protein 1, COMM domain-containing protein 10, COMM domain-containing protein 2, ... | 著者 | Healy, M.D, McNally, K.E, Butkovic, R, Chilton, M, Kato, K, Sacharz, J, McConville, C, Moody, E.R.R, Shaw, S, Planelles-Herrero, V.J, Kadapalakere, S.Y, Ross, J, Borucu, U, Palmer, C.S, Chen, K, Croll, T.I, Hall, R.J, Caruana, N.J, Ghai, R, Nguyen, T.H.D, Heesom, K.J, Saitoh, S, Berger, I, Berger-Schaffitzel, C, Williams, T.A, Stroud, D.A, Derivery, E, Collins, B.M, Cullen, P.J. | 登録日 | 2022-11-08 | 公開日 | 2023-05-24 | 実験手法 | ELECTRON MICROSCOPY (3.12 Å) | 主引用文献 | Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome. Cell, 186, 2023
|
|
5JQP
| Crystal structure of ER glucosidase II heterodimeric complex consisting of catalytic subunit and the binding domain of regulatory subunit | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha glucosidase-like protein, CALCIUM ION, ... | 著者 | Satoh, T, Toshimori, T, Noda, M, Uchiyama, S, Kato, K. | 登録日 | 2016-05-05 | 公開日 | 2016-09-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Interaction mode between catalytic and regulatory subunits in glucosidase II involved in ER glycoprotein quality control. Protein Sci., 25, 2016
|
|
5WTQ
| Crystal structure of human proteasome-assembling chaperone PAC4 | 分子名称: | CHLORIDE ION, NICKEL (II) ION, Proteasome assembly chaperone 4 | 著者 | Kurimoto, E, Satoh, T, Ito, Y, Ishihara, E, Tanaka, K, Kato, K. | 登録日 | 2016-12-13 | 公開日 | 2017-03-22 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure of human proteasome assembly chaperone PAC4 involved in proteasome formation Protein Sci., 26, 2017
|
|
4DBG
| Crystal structure of HOIL-1L-UBL complexed with a HOIP-UBA derivative | 分子名称: | RING finger protein 31, RanBP-type and C3HC4-type zinc finger-containing protein 1 | 著者 | Yagi, H, Hiromoto, T, Mizushima, T, Kurimoto, E, Kato, K. | 登録日 | 2012-01-15 | 公開日 | 2012-04-04 | 最終更新日 | 2012-05-16 | 実験手法 | X-RAY DIFFRACTION (2.71 Å) | 主引用文献 | A non-canonical UBA-UBL interaction forms the linear-ubiquitin-chain assembly complex Embo Rep., 13, 2012
|
|
2RUE
| |
2RQY
| Solution structure and dynamics of mouse ARMET | 分子名称: | Putative uncharacterized protein | 著者 | Hoseki, J, Sasakawa, H, Yamaguchi, Y, Maeda, M, Kubota, H, Kato, K, Nagata, K. | 登録日 | 2010-01-26 | 公開日 | 2010-04-21 | 最終更新日 | 2022-03-16 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure and dynamics of mouse ARMET. Febs Lett., 584, 2010
|
|
2RUF
| |
1WR6
| Crystal structure of GGA3 GAT domain in complex with ubiquitin | 分子名称: | ADP-ribosylation factor binding protein GGA3, ubiquitin | 著者 | Kawasaki, M, Shiba, T, Shiba, Y, Yamaguchi, Y, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Kato, K, Nakayama, K, Wakatsuki, S. | 登録日 | 2004-10-12 | 公開日 | 2005-06-28 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Molecular mechanism of ubiquitin recognition by GGA3 GAT domain. Genes Cells, 10, 2005
|
|
1WRD
| Crystal structure of Tom1 GAT domain in complex with ubiquitin | 分子名称: | Target of Myb protein 1, Ubiquitin | 著者 | Akutsu, M, Kawasaki, M, Katoh, Y, Shiba, T, Yamaguchi, Y, Kato, R, Kato, K, Nakayama, K, Wakatsuki, S. | 登録日 | 2004-10-14 | 公開日 | 2005-10-11 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain. Febs Lett., 579, 2005
|
|
4YGE
| Crystal structure of ERGIC-53/MCFD2, trigonal calcium-bound form 2 | 分子名称: | CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ... | 著者 | Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K. | 登録日 | 2015-02-26 | 公開日 | 2016-04-06 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.05 Å) | 主引用文献 | Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport. Acta Crystallogr.,Sect.F, 76, 2020
|
|
4YGB
| Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-free form | 分子名称: | CALCIUM ION, GLYCEROL, Multiple coagulation factor deficiency protein 2, ... | 著者 | Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K. | 登録日 | 2015-02-26 | 公開日 | 2016-04-06 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport. Acta Crystallogr.,Sect.F, 76, 2020
|
|
4YGC
| Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 1 | 分子名称: | CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ... | 著者 | Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K. | 登録日 | 2015-02-26 | 公開日 | 2016-04-06 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport. Acta Crystallogr.,Sect.F, 76, 2020
|
|
4YGD
| Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 2 | 分子名称: | CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ... | 著者 | Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K. | 登録日 | 2015-02-26 | 公開日 | 2016-04-06 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.51 Å) | 主引用文献 | Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport. Acta Crystallogr.,Sect.F, 76, 2020
|
|
2RSU
| Alternative structure of Ubiquitin | 分子名称: | Ubiquitin | 著者 | Kitazawa, S, Kameda, T, Yagi-Utsumi, M, Kato, K, Kitahara, R. | 登録日 | 2012-06-15 | 公開日 | 2013-03-27 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution Structure of the Q41N Variant of Ubiquitin as a Model for the Alternatively Folded N2 State of Ubiquitin Biochemistry, 52, 2013
|
|
4YD9
| Crystal structure of squid hemocyanin | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CU2-O2 CLUSTER, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Matsuno, A, Gai, Z, Kato, K, Tanaka, Y, Yao, M. | 登録日 | 2015-02-21 | 公開日 | 2015-10-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 angstrom Resolution Structure, 23, 2015
|
|
4WJ3
| Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa | 分子名称: | 76mer-tRNA, Aspartate--tRNA(Asp/Asn) ligase, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, ... | 著者 | Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. | 登録日 | 2014-09-29 | 公開日 | 2014-12-31 | 最終更新日 | 2020-02-05 | 実験手法 | X-RAY DIFFRACTION (3.705 Å) | 主引用文献 | Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA, 112, 2015
|
|
4WJ4
| Crystal structure of non-discriminating aspartyl-tRNA synthetase from Pseudomonas aeruginosa complexed with tRNA(Asn) and aspartic acid | 分子名称: | 76mer-tRNA, ASPARTIC ACID, Aspartate--tRNA(Asp/Asn) ligase | 著者 | Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. | 登録日 | 2014-09-29 | 公開日 | 2014-12-31 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (3.294 Å) | 主引用文献 | Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA, 112, 2015
|
|
4XD9
| Structure of Rpf2-Rrs1 complex involved in ribosome biogenesis | 分子名称: | Ribosome biogenesis protein (Rrs1), putative (AFU_orthologue AFUA_7G04430), Ribosome biogenesis protein, ... | 著者 | Asano, N, Kato, K, Yao, M. | 登録日 | 2014-12-19 | 公開日 | 2015-06-10 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis. Nucleic Acids Res., 43, 2015
|
|
6JPT
| Crystal structure of human PAC3 homodimer (trigonal form) | 分子名称: | POTASSIUM ION, Proteasome assembly chaperone 3, THIOCYANATE ION | 著者 | Satoh, T, Yagi-Utsumi, M, Okamoto, K, Kurimoto, E, Tanaka, K, Kato, K. | 登録日 | 2019-03-27 | 公開日 | 2019-05-29 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (0.96 Å) | 主引用文献 | Molecular and Structural Basis of the Proteasome alpha Subunit Assembly Mechanism Mediated by the Proteasome-Assembling Chaperone PAC3-PAC4 Heterodimer. Int J Mol Sci, 20, 2019
|
|
6S24
| Crystal structure of the TgGalNAc-T3 in complex with UDP, manganese and the peptide 3 | 分子名称: | 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ALA-THR-GLY-ALA-GLY-ALA-GLY-ALA-GLY-THR-THR-PRO-GLY-PRO, ... | 著者 | de las Rivas, M, Daniel, E.J.P, Narimatsu, Y, Companon, I, Kato, K, Hermosilla, P, Thureau, A, Ceballos-Laita, L, Coelho, H, Bernado, P, Marcelo, F, Hansen, L, Lostao, A, Corzana, F, Clausen, H, Gerken, T.A, Hurtado-Guerrero, R. | 登録日 | 2019-06-20 | 公開日 | 2019-12-25 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (2.12 Å) | 主引用文献 | Molecular basis for fibroblast growth factor 23 O-glycosylation by GalNAc-T3. Nat.Chem.Biol., 16, 2020
|
|
6S22
| Crystal structure of the TgGalNAc-T3 in complex with UDP, manganese and FGF23c | 分子名称: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | de las Rivas, M, Daniel, E.J.P, Narimatsu, Y, Companon, I, Kato, K, Hermosilla, P, Thureau, A, Ceballos-Laita, L, Coelho, H, Bernado, P, Marcelo, F, Hansen, L, Lostao, A, Corzana, F, Clausen, H, Gerken, T.A, Hurtado-Guerrero, R. | 登録日 | 2019-06-20 | 公開日 | 2019-12-25 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | Molecular basis for fibroblast growth factor 23 O-glycosylation by GalNAc-T3. Nat.Chem.Biol., 16, 2020
|
|
1UMI
| Structural basis of sugar-recognizing ubiquitin ligase | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, F-box only protein 2 | 著者 | Mizushima, T, Hirao, T, Yoshida, Y, Lee, S.J, Chiba, T, Iwai, K, Yamaguchi, Y, Kato, K, Tsukihara, T, Tanaka, K. | 登録日 | 2003-10-01 | 公開日 | 2004-04-06 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Structural basis of sugar-recognizing ubiquitin ligase. Nat.Struct.Mol.Biol., 11, 2004
|
|
1UMH
| Structural basis of sugar-recognizing ubiquitin ligase | 分子名称: | F-box only protein 2, NICKEL (II) ION | 著者 | Mizushima, T, Hirao, T, Yoshida, Y, Lee, S.J, Chiba, T, Iwai, K, Yamaguchi, Y, Kato, K, Tsukihara, T, Tanaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2003-10-01 | 公開日 | 2004-04-06 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural basis of sugar-recognizing ubiquitin ligase NAT.STRUCT.MOL.BIOL., 11, 2004
|
|
1IYF
| Solution structure of ubiquitin-like domain of human parkin | 分子名称: | parkin | 著者 | Sakata, E, Yamaguchi, Y, Kurimoto, E, Kikuchi, J, Yokoyama, S, Kawahara, H, Yokosawa, H, Hattori, N, Mizuno, Y, Tanaka, K, Kato, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2002-08-13 | 公開日 | 2003-03-25 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain EMBO REP., 4, 2003
|
|