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PDB: 181 件
1WMR
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Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase
著者Mizuno, M, Tonozuka, T, Miyasaka, Y, Akeboshi, H, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2004-07-15
公開日2005-07-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
J.Mol.Biol., 376, 2008
1WZM
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Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt R469K
分子名称: Alpha-amylase II, CALCIUM ION
著者Mizuno, M, Ichikawa, K, Tonozuka, T, Ohtaki, A, Shimura, Y, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2005-03-06
公開日2005-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Mutagenesis and Structural Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase II (TVA II)
To be Published
1X0C
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Improved Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase
著者Mizuno, M, Tonozuka, T, Yamamura, A, Miyasaka, Y, Akeboshi, H, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2005-03-17
公開日2006-06-13
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
J.Mol.Biol., 376, 2008
1VB9
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Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product
分子名称: CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-[alpha-D-glucopyranose-(1-6)]alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-amylase II
著者Mizuno, M, Tonozuka, T, Uechi, A, Ohtaki, A, Ichikawa, K, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2004-02-25
公開日2005-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product
EUR.J.BIOCHEM., 271, 2004
1VFO
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Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/beta-cyclodextrin complex
分子名称: CALCIUM ION, Cyclic alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ...
著者Ohtaki, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2004-04-16
公開日2005-02-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism
J.BIOL.CHEM., 279, 2004
2D0F
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Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N complexed with P2, a pullulan model oligosaccharide
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
著者Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2005-08-02
公開日2006-07-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
2D0H
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BU of 2d0h by Molmil
Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2005-08-02
公開日2006-07-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
2D0G
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Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ...
著者Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2005-08-02
公開日2006-07-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
2D2O
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Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft
分子名称: CALCIUM ION, Neopullulanase 2, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Ohtaki, A, Mizuno, M, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2005-09-13
公開日2006-08-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft
Carbohydr.Res., 341, 2006
2ZYM
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BU of 2zym by Molmil
Crystal structure of cyclo/maltodextrin-binding protein complexed with alpha-cyclodextrin
分子名称: Cyclohexakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein
著者Matsumoto, M, Yamada, M, Kurakata, Y, Yoshida, H, Kamitori, S, Nishikawa, A, Tonozuka, T.
登録日2009-01-27
公開日2009-03-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein
Febs J., 276, 2009
2ZYN
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BU of 2zyn by Molmil
Crystal structure of cyclo/maltodextrin-binding protein complexed with beta-cyclodextrin
分子名称: Cycloheptakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein
著者Matsumoto, M, Yamada, M, Kurakata, Y, Yoshida, H, Kamitori, S, Nishikawa, A, Tonozuka, T.
登録日2009-01-27
公開日2009-03-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein
Febs J., 276, 2009
3ALJ
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BU of 3alj by Molmil
Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, reduced form
分子名称: 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, BETA-MERCAPTOETHANOL, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Kobayashi, J, Yoshida, H, Yoshikane, Y, Kamitori, S, Yagi, T.
登録日2010-08-04
公開日2011-08-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
To be Published
3A9T
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BU of 3a9t by Molmil
X-ray Structure of Bacillus pallidus D-Arabinose Isomerase Complex with L-Fucitol
分子名称: D-arabinose isomerase, FUCITOL, MANGANESE (II) ION
著者Takeda, K, Yoshida, H, Izumori, K, Kamitori, S.
登録日2009-11-05
公開日2010-04-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
3ALM
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BU of 3alm by Molmil
Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant C294A
分子名称: 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
著者Kobayashi, J, Yoshida, H, Yoshikane, Y, Kamitori, S, Yagi, T.
登録日2010-08-04
公開日2011-08-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
To be Published
2Z8G
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BU of 2z8g by Molmil
Aspergillus niger ATCC9642 isopullulanase complexed with isopanose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose
著者Mizuno, M, Koide, A, Yamamura, A, Akeboshi, H, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
登録日2007-09-05
公開日2007-12-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
J.Mol.Biol., 376, 2008
2ZKN
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BU of 2zkn by Molmil
X-ray structure of mutant galectin-1/lactose complex
分子名称: Galectin-1, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Abe, A, Yoshida, H, Kamitori, S.
登録日2008-03-26
公開日2008-09-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Functional and structural bases of a cysteine-less mutant as a long-lasting substitute for galectin-1
Glycobiology, 18, 2008
3A9S
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X-ray Structure of Bacillus pallidus D-Arabinose Isomerase Complex with Glycerol
分子名称: D-arabinose isomerase, GLYCEROL, MANGANESE (II) ION
著者Takeda, K, Yoshida, H, Izumori, K, Kamitori, S.
登録日2009-11-05
公開日2010-04-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
3ALL
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BU of 3all by Molmil
Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant Y270A
分子名称: 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, BETA-MERCAPTOETHANOL, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Kobayashi, J, Yoshida, H, Yoshikane, Y, Kamitori, S, Yagi, T.
登録日2010-08-04
公開日2011-08-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
To be published
2ZYO
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Crystal structure of cyclo/maltodextrin-binding protein complexed with maltotetraose
分子名称: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, solute-binding protein
著者Matsumoto, M, Yamada, M, Kurakata, Y, Yoshida, H, Kamitori, S, Nishikawa, A, Tonozuka, T.
登録日2009-01-27
公開日2009-03-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein
Febs J., 276, 2009
3A6O
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BU of 3a6o by Molmil
Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/acarbose complex
分子名称: ACARBOSE DERIVED PENTASACCHARIDE, CALCIUM ION, Neopullulanase 2
著者Ohtaki, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2009-09-07
公開日2009-09-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism
J.BIOL.CHEM., 279, 2004
3A9R
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BU of 3a9r by Molmil
X-ray Structures of Bacillus pallidus D-Arabinose IsomeraseComplex with (4R)-2-METHYLPENTANE-2,4-DIOL
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, D-arabinose isomerase, MANGANESE (II) ION
著者Takeda, K, Yoshida, H, Izumori, K, Kamitori, S.
登録日2009-11-05
公開日2010-04-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
Biochim.Biophys.Acta, 1804, 2010
3W7T
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Escherichia coli K12 YgjK complexed with mannose
分子名称: CALCIUM ION, MAGNESIUM ION, Uncharacterized protein YgjK, ...
著者Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
登録日2013-03-06
公開日2013-04-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
3WUC
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BU of 3wuc by Molmil
X-ray crystal structure of Xenopus laevis galectin-Va
分子名称: Galectin, MALONIC ACID, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
著者Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T.
登録日2014-04-23
公開日2015-04-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015
3WW3
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X-ray structures of Cellulomonas parahominis L-ribose isomerase with no ligand
分子名称: L-ribose isomerase, MANGANESE (II) ION
著者Terami, Y, Yoshida, H, Takata, G, Kamitori, S.
登録日2014-06-13
公開日2015-04-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway.
Appl.Microbiol.Biotechnol., 99, 2015
3WUD
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X-ray crystal structure of Xenopus laevis galectin-Ib
分子名称: Galectin, SULFATE ION, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
著者Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T.
登録日2014-04-23
公開日2015-04-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015

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