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PDB: 104 件
2ZVP
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Crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAP and p-nitrophenol
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, GLYCEROL, P-NITROPHENOL, ...
著者Teramoto, T, Sakakibara, Y, Liu, M.-C, Suiko, M, Kimura, M, Kakuta, Y.
登録日2008-11-14
公開日2008-12-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural basis for the broad range substrate specificity of a novel mouse cytosolic sulfotransferase--mSULT1D1
Biochem.Biophys.Res.Commun., 379, 2009
2ZYU
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Crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAPS and p-nitrophenyl sulfate
分子名称: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, 4-nitrophenyl sulfate, GLYCEROL, ...
著者Teramoto, T, Sakakibara, Y, Liu, M.-C, Suiko, M, Kimura, M, Kakuta, Y.
登録日2009-01-29
公開日2009-04-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZYV
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BU of 2zyv by Molmil
Crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAPS/PAP and p-nitrophenol
分子名称: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, GLYCEROL, P-NITROPHENOL, ...
著者Teramoto, T, Sakakibara, Y, Liu, M.-C, Suiko, M, Kimura, M, Kakuta, Y.
登録日2009-01-29
公開日2009-04-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
2ZYW
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BU of 2zyw by Molmil
crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAP and p-nitrophenol, obtained by two-step soaking method
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, GLYCEROL, P-NITROPHENOL, ...
著者Teramoto, T, Sakakibara, Y, Liu, M.-C, Suiko, M, Kimura, M, Kakuta, Y.
登録日2009-01-29
公開日2009-04-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate
Biochem.Biophys.Res.Commun., 383, 2009
6KZR
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BU of 6kzr by Molmil
Crystal structure of mouse DCAR2 CRD domain
分子名称: C-type lectin domain family 4, member b1, CALCIUM ION, ...
著者Omahdi, Z, Horikawa, Y, Toyonaga, K, Teramoto, T, Kakuta, Y, Yamasaki, S.
登録日2019-09-25
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.304 Å)
主引用文献Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR.
J.Biol.Chem., 295, 2020
6LFJ
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BU of 6lfj by Molmil
Crystal structure of mouse DCAR2 CRD domain complex with IPM2
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, C-type lectin domain family 4, member b1, ...
著者Omahdi, Z, Horikawa, Y, Toyonaga, K, Kakuta, Y, Yamasaki, S.
登録日2019-12-03
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR.
J.Biol.Chem., 295, 2020
6LKR
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BU of 6lkr by Molmil
Crystal structure of mouse DCAR2 CRD domain complex
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, C-type lectin domain family 4, member b1, ...
著者Omahdi, Z, Horikawa, Y, Toyonaga, K, Kakuta, Y, Yamasaki, S.
登録日2019-12-20
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR.
J.Biol.Chem., 295, 2020
7EFV
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BU of 7efv by Molmil
Crystal structure of octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
分子名称: C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN
著者Minato, T, Teramoto, T, Hung, N.K, Yamada, K, Ogo, S, Kakuta, Y, Yoon, K.S.
登録日2021-03-23
公開日2021-11-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.77 Å)
主引用文献Non-conventional octameric structure of C-phycocyanin.
Commun Biol, 4, 2021
7EH7
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BU of 7eh7 by Molmil
Cryo-EM structure of the octameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
分子名称: C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN
著者Minato, T, Teramoto, T, Adachi, N, Hung, N.K, Yamada, K, Kawasaki, M, Akutsu, M, Moriya, T, Senda, T, Ogo, S, Kakuta, Y, Yoon, K.S.
登録日2021-03-28
公開日2021-11-17
実験手法ELECTRON MICROSCOPY (3.71 Å)
主引用文献Non-conventional octameric structure of C-phycocyanin.
Commun Biol, 4, 2021
7EH8
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BU of 7eh8 by Molmil
Cryo-EM structure of the hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
分子名称: C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN
著者Minato, T, Teramoto, T, Adachi, N, Hung, N.K, Yamada, K, Kawasaki, M, Akutsu, M, Moriya, T, Senda, T, Ogo, S, Kakuta, Y, Yoon, K.S.
登録日2021-03-28
公開日2021-11-17
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Non-conventional octameric structure of C-phycocyanin.
Commun Biol, 4, 2021
7EFW
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BU of 7efw by Molmil
Crystal structure of hexameric state of C-phycocyanin from Thermoleptolyngbya sp. O-77
分子名称: C-phycocyanin alpha chain, C-phycocyanin beta chain, GLYCEROL, ...
著者Minato, T, Teramoto, T, Hung, N.K, Yamada, K, Ogo, S, Kakuta, Y, Yoon, K.S.
登録日2021-03-23
公開日2021-11-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Non-conventional octameric structure of C-phycocyanin.
Commun Biol, 4, 2021
7F3E
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BU of 7f3e by Molmil
Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus
分子名称: RNA-free ribonuclease P
著者Teramoto, T, Koyasu, T, Adachi, N, Kawasaki, M, Moriya, T, Numata, T, Senda, T, Kakuta, Y.
登録日2021-06-16
公開日2021-08-11
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis.
J.Biol.Chem., 297, 2021
1UAX
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BU of 1uax by Molmil
Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
分子名称: Ribonuclease HII
著者Hata, T, Numata, T, Kakuta, Y, Kimura, M.
登録日2003-03-24
公開日2004-06-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
To be published
1VD1
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BU of 1vd1 by Molmil
Crystal structure of RNase NT in complex with 5'-AMP
分子名称: ADENOSINE MONOPHOSPHATE, RNase NGR3
著者Kawano, S, Kakuta, Y, Kimura, M.
登録日2004-03-17
公開日2005-04-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
1WMI
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BU of 1wmi by Molmil
Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
分子名称: hypothetical protein PHS013, hypothetical protein PHS014
著者Takagi, H, Kakuta, Y, Kamachi, R, Yao, M, Tanaka, I, Kimura, M.
登録日2004-07-09
公開日2005-03-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
Nat.Struct.Mol.Biol., 12, 2005
1VCZ
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BU of 1vcz by Molmil
Crystal structure of the RNase NT in complex with 5'-GMP
分子名称: GUANOSINE-5'-MONOPHOSPHATE, RNase NGR3
著者Kawano, S, Kakuta, Y, Kimura, M.
登録日2004-03-17
公開日2005-04-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
1VD3
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BU of 1vd3 by Molmil
Ribonuclease NT in complex with 2'-UMP
分子名称: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, RNase NGR3
著者Kawano, S, Kakuta, Y, Kimura, M.
登録日2004-03-18
公開日2005-04-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
1V9H
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BU of 1v9h by Molmil
Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
分子名称: Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
著者Kimura, K, Numata, T, Kakuta, Y, Kimura, M.
登録日2004-01-26
公開日2004-10-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
1V76
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BU of 1v76 by Molmil
Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3
分子名称: RNase P protein Ph1771p, SULFATE ION
著者Numata, T, Kakuta, Y, Kimura, M.
登録日2003-12-12
公開日2004-10-05
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: an archaeal homolog of eukaryotic ribonuclease P protein Rpp29
Rna, 10, 2004
1V77
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BU of 1v77 by Molmil
Crystal structure of the PH1877 protein
分子名称: hypothetical protein PH1877
著者Takagi, H, Numata, T, Kakuta, Y, Kimura, M.
登録日2003-12-12
公開日2004-08-31
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 319, 2004
6K3N
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BU of 6k3n by Molmil
Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with BPA-monoF
分子名称: 2-fluoranyl-4-[2-(4-hydroxyphenyl)propan-2-yl]phenol, Estrogen-related receptor gamma
著者Matsushima, A, Nose, T, Kakuta, Y.
登録日2019-05-21
公開日2020-05-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Evaluation of the Influence of Halogenation on the Binding of Bisphenol A to the Estrogen-Related Receptor gamma.
Chem.Res.Toxicol., 33, 2020
2Z7C
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BU of 2z7c by Molmil
Crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii
分子名称: ARGININE, DNA/RNA-binding protein Alba
著者Hada, K, Nakashima, T, Osawa, T, Shimada, H, Kakuta, Y, Kimura, M.
登録日2007-08-17
公開日2008-08-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Biosci.Biotechnol.Biochem., 72, 2008
2Z87
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BU of 2z87 by Molmil
Crystal structure of chondroitin polymerase from Escherichia coli strain K4 (K4CP) complexed with UDP-GalNAc and UDP
分子名称: Chondroitin synthase, MANGANESE (II) ION, URIDINE-5'-DIPHOSPHATE, ...
著者Osawa, T, Sugiura, N, Shimada, H, Hirooka, R, Tsuji, A, Kimura, M, Kimata, K, Kakuta, Y.
登録日2007-09-03
公開日2008-09-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of chondroitin polymerase from Escherichia coli K4.
Biochem. Biophys. Res. Commun., 378, 2009
6LKP
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BU of 6lkp by Molmil
Crystal structure of Dps1 from the thermophilic non-heterocystous filamentous cyanobacterium Thermoleptolyngbya sp. O-77
分子名称: DNA protection during starvation protein, FE (III) ION, ZINC ION
著者Minato, T, Teramoto, T, Kakuta, Y, Ogo, S, Yoon, K.S.
登録日2019-12-19
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Biochemical and structural characterization of a thermostable Dps protein with His-type ferroxidase centers and outer metal-binding sites.
Febs Open Bio, 10, 2020
2ZPO
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BU of 2zpo by Molmil
Crystal Structure of Green Turtle Egg White Ribonuclease
分子名称: GLYCEROL, Ribonuclease, SULFATE ION
著者Katekaew, S, Kakuta, Y, Torikata, T, Kimura, M, Yoneda, K, Araki, T.
登録日2008-07-25
公開日2008-08-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of Newly Found Green Turtle Egg White Ribonuclease
To be Published

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件を2024-07-24に公開中

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