2RPF
| RecO-bound ssDNA | Descriptor: | DNA (5'-D(*DTP*DAP*DCP*DG)-3') | Authors: | Masuda, T, Ito, Y, Shibata, T, Mikawa, T. | Deposit date: | 2008-05-15 | Release date: | 2009-05-26 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009
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2RPH
| RecT-bound ssDNA | Descriptor: | DNA (5'-D(*DTP*DAP*DCP*DG)-3') | Authors: | Masuda, T, Ito, Y, Shibata, T, Mikawa, T. | Deposit date: | 2008-05-15 | Release date: | 2009-05-26 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009
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2RPE
| hsRad51-bound ssDNA | Descriptor: | DNA (5'-D(*DTP*DAP*DCP*DG)-3') | Authors: | Masuda, T, Ito, Y, Shibata, T, Mikawa, T. | Deposit date: | 2008-05-15 | Release date: | 2009-05-26 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | A non-canonical DNA structure enables homologous recombination in various genetic systems J.Biol.Chem., 284, 2009
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1WLC
| Congerin II Y16S/T88I double mutant | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II | Authors: | Shionyu-Mitsuyama, C, Ito, Y, Konno, A, Miwa, Y, Ogawa, T, Muramoto, K, Shirai, T. | Deposit date: | 2004-06-22 | Release date: | 2005-06-07 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure J.Mol.Biol., 347, 2005
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1WLD
| Congerin II T88I single mutant | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Shionyu-Mitsuyama, C, Ito, Y, Konno, A, Miwa, Y, Ogawa, T, Muramoto, K, Shirai, T. | Deposit date: | 2004-06-22 | Release date: | 2005-06-07 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure J.Mol.Biol., 347, 2005
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1WLW
| Congerin II Y16S single mutant | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Shionyu-Mitsuyama, C, Ito, Y, Konno, A, Miwa, Y, Ogawa, T, Muramoto, K, Shirai, T. | Deposit date: | 2004-06-30 | Release date: | 2005-06-07 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure J.Mol.Biol., 347, 2005
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2CW1
| Solution structure of the de novo-designed lambda Cro fold protein | Descriptor: | SN4m | Authors: | Isogai, Y, Ito, Y, Ikeya, T, Shiro, Y, Ota, M. | Deposit date: | 2005-06-15 | Release date: | 2005-12-13 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Design of lambda Cro fold: solution structure of a monomeric variant of the de novo protein. J.Mol.Biol., 354, 2005
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5ZCZ
| Solution structure of the T. Thermophilus HB8 TTHA1718 protein in living eukaryotic cells by in-cell NMR spectroscopy | Descriptor: | Heavy metal binding protein | Authors: | Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y. | Deposit date: | 2018-02-22 | Release date: | 2019-08-21 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells. Angew.Chem.Int.Ed.Engl., 58, 2019
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5Z4B
| GB1 structure determination in living eukaryotic cells by in-cell NMR spectroscopy | Descriptor: | Protein LG | Authors: | Tanaka, T, Teppei, I, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y. | Deposit date: | 2018-01-10 | Release date: | 2019-01-23 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells. Angew.Chem.Int.Ed.Engl., 58, 2019
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5ZD0
| Solution structure of human ubiquitin with three alanine mutations in living eukaryotic cells by in-cell NMR spectroscopy | Descriptor: | ubiquitin | Authors: | Tanaka, T, Ikeya, T, Kamoshida, H, Mishima, M, Shirakawa, M, Guentert, P, Ito, Y. | Deposit date: | 2018-02-22 | Release date: | 2019-08-21 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | High-Resolution Protein 3D Structure Determination in Living Eukaryotic Cells. Angew.Chem.Int.Ed.Engl., 58, 2019
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6IQH
| X-ray crystal structure of covalent-bonded complex of Fc and peptide | Descriptor: | 17-mer peptide (GPDCAYHKGELVWCTFH), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain | Authors: | Adachi, M, Ito, Y. | Deposit date: | 2018-11-08 | Release date: | 2019-02-13 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.999 Å) | Cite: | Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format. Bioconjug. Chem., 30, 2019
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6IQG
| X-ray crystal structure of Fc and peptide complex | Descriptor: | 18-mer peptide G(HCS)DCAYHRGELVWCT(HCS)H(NH2), 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... | Authors: | Adachi, M, Ito, Y. | Deposit date: | 2018-11-08 | Release date: | 2019-02-13 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.998 Å) | Cite: | Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format. Bioconjug. Chem., 30, 2019
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5WTQ
| Crystal structure of human proteasome-assembling chaperone PAC4 | Descriptor: | CHLORIDE ION, NICKEL (II) ION, Proteasome assembly chaperone 4 | Authors: | Kurimoto, E, Satoh, T, Ito, Y, Ishihara, E, Tanaka, K, Kato, K. | Deposit date: | 2016-12-13 | Release date: | 2017-03-22 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of human proteasome assembly chaperone PAC4 involved in proteasome formation Protein Sci., 26, 2017
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2E4E
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3WW6
| Crystal Structure of hen egg white lysozyme mutant N46D/D52S | Descriptor: | CHLORIDE ION, Lysozyme C | Authors: | Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T. | Deposit date: | 2014-06-17 | Release date: | 2015-06-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme. Protein Sci., 25, 2016
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3WW5
| Crystal Structure of hen egg white lysozyme mutant N46E/D52S | Descriptor: | CHLORIDE ION, Lysozyme C | Authors: | Abe, Y, Kubota, M, Ito, Y, Imoto, T, Ueda, T. | Deposit date: | 2014-06-17 | Release date: | 2015-06-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.53 Å) | Cite: | Effect on catalysis by replacement of catalytic residue from hen egg white lysozyme to Venerupis philippinarum lysozyme. Protein Sci., 25, 2016
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