Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17801 results

1UVJ
DownloadVisualize
BU of 1uvj by Molmil
The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 7nt RNA
Descriptor: 5'-R(*UP*UP*CP*CP)-3', MANGANESE (II) ION, RNA-directed RNA polymerase
Authors:Salgado, P.S, Makeyev, E.V, Butcher, S, Bamford, D, Stuart, D.I, Grimes, J.M.
Deposit date:2004-01-21
Release date:2004-02-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase.
Structure, 12, 2004
1V0U
DownloadVisualize
BU of 1v0u by Molmil
Phospholipase D from Streptomyces sp. strain PMF soaked with the product glycerophosphate.
Descriptor: PHOSPHITE ION, PHOSPHOLIPASE D
Authors:Leiros, I, McSweeney, S, Hough, E.
Deposit date:2004-04-02
Release date:2004-06-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:The Reaction Mechanism of Phospholipase D from Streptomyces Sp. Strain Pmf. Snapshots Along the Reaction Pathway Reveal a Pentacoordinate Reaction Intermediate and an Unexpected Final Product
J.Mol.Biol., 339, 2004
1XRT
DownloadVisualize
BU of 1xrt by Molmil
The Crystal Structure of a Novel, Latent Dihydroorotase from Aquifex Aeolicus at 1.7 A Resolution
Descriptor: Dihydroorotase, ZINC ION
Authors:Martin, P.D, Purcarea, C, Zhang, P, Vaishnav, A, Sadecki, S, Guy-Evans, H.I, Evans, D.R, Edwards, B.F.
Deposit date:2004-10-15
Release date:2005-07-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.609 Å)
Cite:The crystal structure of a novel, latent dihydroorotase from Aquifex aeolicus at 1.7A resolution
J.Mol.Biol., 348, 2005
6B61
DownloadVisualize
BU of 6b61 by Molmil
IMPase (AF2372) with 25 mM Asp
Descriptor: ASPARTIC ACID, Fructose-1,6-bisphosphatase/inositol-1-monophosphatase, MAGNESIUM ION, ...
Authors:Goldstein, R.I, Roberts, M.
Deposit date:2017-10-01
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Osmolyte binding capacity of a dual action IMPase/FBPase (AF2372)
To Be Published
6BD5
DownloadVisualize
BU of 6bd5 by Molmil
Crystal structure of human CYP3A4 bound to an inhibitor
Descriptor: Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE, tert-butyl (2-{[(2R)-2-(cyclopentylamino)-3-oxo-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}ethyl)carbamate
Authors:Sevrioukova, I.
Deposit date:2017-10-21
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Inhibition of Human CYP3A4 by Rationally Designed Ritonavir-Like Compounds: Impact and Interplay of the Side Group Functionalities.
Mol Pharm., 15, 2018
6B80
DownloadVisualize
BU of 6b80 by Molmil
Crystal structure of myotoxin II from Bothrops moojeni complexed to myristic acid
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Basic phospholipase A2 homolog 2, MYRISTIC ACID, ...
Authors:Salvador, G.H.M, dos Santos, J.I, Fontes, M.R.M.
Deposit date:2017-10-05
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Structural evidence for a fatty acid-independent myotoxic mechanism for a phospholipase A2-like toxin.
Biochim Biophys Acta Proteins Proteom, 1866, 2018
1UKG
DownloadVisualize
BU of 1ukg by Molmil
Pterocarps angolensis lectin PAL in complex with methyl-alpha-mannose
Descriptor: CALCIUM ION, MANGANESE (II) ION, lectin, ...
Authors:Loris, R, Van Walle, I, De Greve, H, Beeckmans, S, Deboeck, F, Wyns, L, Bouckaert, J.
Deposit date:2003-08-21
Release date:2004-02-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Oligomannose Recognition by the Pterocarpus angolensis Seed Lectin
J.Mol.Biol., 335, 2004
1UTO
DownloadVisualize
BU of 1uto by Molmil
Trypsin specificity as elucidated by LIE calculations, X-ray structures and association constant measurements
Descriptor: 2-PHENYLETHYLAMINE, CALCIUM ION, GLYCEROL, ...
Authors:Leiros, H.-K.S, Brandsdal, B.O, Andersen, O.A, Os, V, Leiros, I, Helland, R, Otlewski, J, Willassen, N.P, Smalas, A.O.
Deposit date:2003-12-09
Release date:2004-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Trypsin Specificity as Elucidated by Lie Calculations, X-Ray Structures, and Association Constant Measurements
Protein Sci., 13, 2004
1THQ
DownloadVisualize
BU of 1thq by Molmil
Crystal Structure of Outer Membrane Enzyme PagP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CrcA protein, ...
Authors:Ahn, V.E, Lo, E.I, Engel, C.K, Chen, L, Hwang, P.M, Kay, L.E, Bishop, R.E, Prive, G.G.
Deposit date:2004-06-01
Release date:2004-08-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A hydrocarbon ruler measures palmitate in the enzymatic acylation of endotoxin.
Embo J., 23, 2004
1T85
DownloadVisualize
BU of 1t85 by Molmil
Crystal Structure of the Ferrous CO-bound Cytochrome P450cam Mutant (L358P/C334A)
Descriptor: CAMPHOR, CARBON MONOXIDE, Cytochrome P450-cam, ...
Authors:Nagano, S, Tosha, T, Ishimori, K, Morishima, I, Poulos, T.L.
Deposit date:2004-05-11
Release date:2004-06-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the cytochrome p450cam mutant that exhibits the same spectral perturbations induced by putidaredoxin binding.
J.Biol.Chem., 279, 2004
3RBC
DownloadVisualize
BU of 3rbc by Molmil
Bullfrog M ferritin with iron(III) bound to the ferroxidase site
Descriptor: FE (III) ION, Ferritin, middle subunit
Authors:Bertini, I, Lalli, D, Mangani, S, Pozzi, C, Rosa, C, Turano, P.
Deposit date:2011-03-29
Release date:2012-04-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into the ferroxidase site of ferritins from higher eukaryotes.
J.Am.Chem.Soc., 134, 2012
6BD8
DownloadVisualize
BU of 6bd8 by Molmil
Crystal structure of human CYP3A4 bound to an inhibitor
Descriptor: Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE, S-{(2S)-2-[(1-tert-butoxyethenyl)amino]-3-phenylpropyl}-N~2~-cyclopentyl-N-[(pyridin-3-yl)methyl]-L-cysteinamide
Authors:Sevrioukova, I.
Deposit date:2017-10-21
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Interaction of the rationally designed ritonavir-like inhibitors with human cytochrome P450 3A4: Impact of the side group interplay
Mol. Pharm., 2017
6BDK
DownloadVisualize
BU of 6bdk by Molmil
Crystal structure of human CYP3A4 bound to an inhibitor
Descriptor: Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE, tert-butyl [(2S)-1-{[(2R)-2-(cyclopentylamino)-3-oxo-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}-3-(1H-indol-3-yl)propan-2-yl]carbamate
Authors:Sevrioukova, I.
Deposit date:2017-10-23
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Inhibition of Human CYP3A4 by Rationally Designed Ritonavir-Like Compounds: Impact and Interplay of the Side Group Functionalities.
Mol Pharm., 15, 2018
2JIA
DownloadVisualize
BU of 2jia by Molmil
TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12 K61I
Descriptor: PROTEIN (ANTIFREEZE PROTEIN TYPE III)
Authors:Graether, S.P, Deluca, C.I, Baardsnes, J, Hill, G.A, Davies, P.L, Jia, Z.
Deposit date:1999-01-24
Release date:1999-04-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Quantitative and qualitative analysis of type III antifreeze protein structure and function.
J.Biol.Chem., 274, 1999
2JSW
DownloadVisualize
BU of 2jsw by Molmil
Solution Structure of the R13 Domain of Talin
Descriptor: Talin-1
Authors:Goult, B.T, Gingras, A.R, Bate, N, Critchley, D.R.C, Barsukov, I.L.
Deposit date:2007-07-17
Release date:2008-01-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The structure of the C-terminal actin-binding domain of talin.
Embo J., 27, 2007
2Y6B
DownloadVisualize
BU of 2y6b by Molmil
Ascorbate Peroxidase R38K mutant
Descriptor: ASCORBATE PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Metcalfe, C.L, Efimov, I, Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2011-01-20
Release date:2011-10-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proton Delivery to Ferryl Heme in a Heme Peroxidase: Enzymatic Use of the Grotthuss Mechanism.
J.Am.Chem.Soc., 133, 2011
2P1Q
DownloadVisualize
BU of 2p1q by Molmil
Mechanism of Auxin Perception by the TIR1 ubiquitin ligase
Descriptor: 1H-INDOL-3-YLACETIC ACID, Auxin-responsive protein IAA7, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Tan, X, Calderon-Villalobos, L.I.A, Sharon, M, Robinson, C.V, Estelle, M, Zheng, N.
Deposit date:2007-03-06
Release date:2007-04-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Mechanism of auxin perception by the TIR1 ubiquitin ligase.
Nature, 446, 2007
6BWT
DownloadVisualize
BU of 6bwt by Molmil
2.45 Angstrom Resolution Crystal Structure Thioredoxin Reductase from Francisella tularensis.
Descriptor: CHLORIDE ION, SULFATE ION, Thioredoxin reductase
Authors:Minasov, G, Shuvalova, L, Dubrovska, I, Winsor, J, Grimshaw, S, Kwon, K, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-12-15
Release date:2017-12-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:2.45 Angstrom Resolution Crystal Structure Thioredoxin Reductase from Francisella tularensis.
To Be Published
1ZE3
DownloadVisualize
BU of 1ze3 by Molmil
Crystal Structure of the Ternary Complex of FIMD (N-Terminal Domain) with FIMC and the Pilin Domain of FIMH
Descriptor: 1,2-ETHANEDIOL, Chaperone protein fimC, FimH protein, ...
Authors:Nishiyama, M, Horst, R, Eidam, O, Herrmann, T, Ignatov, O, Vetsch, M, Bettendorff, P, Jelesarov, I, Grutter, M.G, Wuthrich, K, Glockshuber, R, Capitani, G.
Deposit date:2005-04-17
Release date:2005-06-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD.
Embo J., 24, 2005
3IWU
DownloadVisualize
BU of 3iwu by Molmil
Crystal structure of Y116T/I16A double mutant of 5-hydroxyisourate hydrolase
Descriptor: 5-hydroxyisourate hydrolase
Authors:Cendron, L, Ramazzina, I, Berni, R, Percudani, R, Zanotti, G.
Deposit date:2009-09-03
Release date:2010-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Probing the evolution of hydroxyisourate hydrolase into transthyretin through active-site redesign.
J.Mol.Biol., 409, 2011
1Z1H
DownloadVisualize
BU of 1z1h by Molmil
HIV-1 protease complexed with macrocyclic peptidomimetic inhibitor 3
Descriptor: N-{(2R)-2-HYDROXY-2-[(8S,11S)-8-ISOPROPYL-6,9-DIOXO-2-OXA-7,10-DIAZABICYCLO[11.2.2]HEPTADECA-1(15),13,16-TRIEN-11-YL]ETHYL}-N-ISOPENTYLBENZENESULFONAMIDE, Pol polyprotein, SULFATE ION
Authors:Martin, J.L, Begun, J, Schindeler, A, Wickramasinghe, W.A, Alewood, D, Alewood, P.F, Bergman, D.A, Brinkworth, R.I, Abbenante, G, March, D.R, Reid, R.C, Fairlie, D.P.
Deposit date:2005-03-04
Release date:2005-03-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular recognition of macrocyclic peptidomimetic inhibitors by HIV-1 protease
Biochemistry, 38, 1999
1T2Y
DownloadVisualize
BU of 1t2y by Molmil
NMR solution structure of the protein part of Cu6-Neurospora crassa MT
Descriptor: Metallothionein
Authors:Cobine, P.A, McKay, R.T, Zangger, K, Dameron, C.T, Armitage, I.M.
Deposit date:2004-04-23
Release date:2004-11-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of Cu metallothionein from the fungus Neurospora crassa
Eur.J.Biochem., 271, 2004
6BJP
DownloadVisualize
BU of 6bjp by Molmil
Apo form of the E124S mutant of betaine aldehyde dehydrogenase from Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, NAD/NADP-dependent betaine aldehyde dehydrogenase, ...
Authors:Carrizosa-Carbajal, E.I, Gonzalez-Segura, L, Munoz-Clares, R.A.
Deposit date:2017-11-06
Release date:2018-11-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structural role of Glu124 of betaine aldehyde dehydrogenase from Pseudomonas aeruginosa
To Be Published
1ZKJ
DownloadVisualize
BU of 1zkj by Molmil
Structural Basis for the Extended Substrate Spectrum of CMY-10, a Plasmid-Encoded Class C beta-lactamase
Descriptor: ACETIC ACID, ZINC ION, extended-spectrum beta-lactamase
Authors:Cha, S.S, Jung, H.I, An, Y.J, Lee, S.H.
Deposit date:2005-05-03
Release date:2006-04-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis for the extended substrate spectrum of CMY-10, a plasmid-encoded class C beta-lactamase.
Mol.Microbiol., 60, 2006
2P3C
DownloadVisualize
BU of 2p3c by Molmil
Crystal Structure of the subtype F wild type HIV protease complexed with TL-3 inhibitor
Descriptor: ACETIC ACID, benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate, protease
Authors:Sanches, M, Krauchenco, S, Martins, N.H, Gustchina, A, Wlodawer, A, Polikarpov, I.
Deposit date:2007-03-08
Release date:2007-04-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Characterization of B and non-B Subtypes of HIV-Protease: Insights into the Natural Susceptibility to Drug Resistance Development.
J.Mol.Biol., 369, 2007

223532

数据于2024-08-07公开中

PDB statisticsPDBj update infoContact PDBjnumon