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PDB: 17892 results

6T9Y
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CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-LYSIN
Descriptor: (2~{S})-6-azanyl-2-(sulfamoylamino)hexanoic acid, CALCIUM ION, Carboxypeptidase T, ...
Authors:Timofeev, V.I, Akparov, V.K, Kuranova, I.P.
Deposit date:2019-10-29
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:CARBOXYPEPTIDASE T WITH N-SULFAMOYL-L-LYSIN
To Be Published
6Z8O
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Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Krypton gas - structure G491A-Kr
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-02
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6ZB4
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SARS CoV-2 Spike protein, Closed conformation, C1 symmetry
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LINOLEIC ACID, ...
Authors:Toelzer, C, Gupta, K, Yadav, S.K.N, Burucu, U, Schaffitzel, C, Berger, I.
Deposit date:2020-06-06
Release date:2020-09-30
Last modified:2020-11-18
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Free fatty acid binding pocket in the locked structure of SARS-CoV-2 spike protein.
Science, 370, 2020
5LG5
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BU of 5lg5 by Molmil
Crystal structure of allantoin racemase from Pseudomonas fluorescens AllR
Descriptor: Allantoin racemase
Authors:Cendron, l, Zanotti, G, Percudani, R, Ragazzina, I, Puggioni, V, Maccacaro, E, Liuzzi, A, Secchi, A.
Deposit date:2016-07-06
Release date:2017-05-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Structure and Function of a Microbial Allantoin Racemase Reveal the Origin and Conservation of a Catalytic Mechanism.
Biochemistry, 55, 2016
1JNP
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BU of 1jnp by Molmil
Crystal Structure of Murine Tcl1 at 2.5 Resolution
Descriptor: T-CELL LEUKEMIA/LYMPHOMA PROTEIN 1A
Authors:Petock, J.M, Torshin, I.Y, Wang, Y.F, DuBois, G.C, Croce, C.M, Harrison, R.W, Weber, I.T.
Deposit date:2001-07-24
Release date:2001-11-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of murine Tcl1 at 2.5 A resolution and implications for the TCL oncogene family.
Acta Crystallogr.,Sect.D, 57, 2001
5EH1
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Crystal structure of the extracellular part of receptor 2 of human interferon gamma
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, GLYCEROL, ...
Authors:Kolenko, P, Mikulecky, P, Zahradnik, J, Dohnalek, J, Koval, T, Cerny, J, Necasova, I, Schneider, B.
Deposit date:2015-10-27
Release date:2016-08-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human interferon-gamma receptor 2 reveals the structural basis for receptor specificity.
Acta Crystallogr D Struct Biol, 72, 2016
6Z6I
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BU of 6z6i by Molmil
SARS-CoV-2 Macrodomain in complex with ADP-HPD
Descriptor: 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE, ...
Authors:Zorzini, V, Rack, J, Ahel, I.
Deposit date:2020-05-28
Release date:2020-12-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential.
Open Biology, 10, 2020
4V1I
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BU of 4v1i by Molmil
Structure of a novel carbohydrate binding module from glycoside hydrolase family 5 glucanase from Ruminococcus flavefaciens FD-1 at medium resolution
Descriptor: CARBOHYDRATE BINDING MODULE
Authors:Venditto, I, Centeno, M.S.J, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S.
Deposit date:2014-09-26
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Complexity of the Ruminococcus Flavefaciens Cellulosome Reflects an Expansion in Glycan Recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
6Z7R
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BU of 6z7r by Molmil
Structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris hildenborough pressurized with Krypton gas - structure wtKr1
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-01
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6YU7
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BU of 6yu7 by Molmil
Crystal structure of MhsT in complex with L-tyrosine
Descriptor: DODECYL-BETA-D-MALTOSIDE, SODIUM ION, Sodium-dependent transporter, ...
Authors:Focht, D, Neumann, C, Lyons, J, Eguskiza Bilbao, A, Blunck, R, Malinauskaite, L, Schwarz, I.O, Javitch, J.A, Quick, M, Nissen, P.
Deposit date:2020-04-25
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A non-helical region in transmembrane helix 6 of hydrophobic amino acid transporter MhsT mediates substrate recognition.
Embo J., 40, 2021
6YYJ
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BU of 6yyj by Molmil
Crystal structure of native Phycocyanin from T. elongatus in spacegroup P21212 at 2.1 Angstroms
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(~{Z})-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, C-phycocyanin alpha chain, ...
Authors:Feiler, C.G, Falke, S, Sarrou, I.
Deposit date:2020-05-05
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:C-phycocyanin as a highly attractive model system in protein crystallography: unique crystallization properties and packing-diversity screening.
Acta Crystallogr D Struct Biol, 77, 2021
6YU2
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BU of 6yu2 by Molmil
Crystal structure of MhsT in complex with L-isoleucine
Descriptor: ISOLEUCINE, SODIUM ION, Sodium-dependent transporter, ...
Authors:Focht, D, Neumann, C, Lyons, J, Eguskiza Bilbao, A, Blunck, R, Malinauskaite, L, Schwarz, I.O, Javitch, J.A, Quick, M, Nissen, P.
Deposit date:2020-04-25
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A non-helical region in transmembrane helix 6 of hydrophobic amino acid transporter MhsT mediates substrate recognition.
Embo J., 40, 2021
6Z8M
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BU of 6z8m by Molmil
Structure of [NiFeSe] hydrogenase G491S variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491S-O2
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-02
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
7T1V
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BU of 7t1v by Molmil
Crystal structure of an equine H7 hemagglutinin from A/equine/NY/49/73 (H7N7) in complex with 3'-GcLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
Authors:Zhu, X, Wilson, I.A.
Deposit date:2021-12-02
Release date:2022-01-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:N -Glycolylneuraminic Acid Binding of Avian and Equine H7 Influenza A Viruses.
J.Virol., 96, 2022
6YU3
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BU of 6yu3 by Molmil
Crystal structure of MhsT in complex with L-phenylalanine
Descriptor: DODECYL-BETA-D-MALTOSIDE, GLYCEROL, PHENYLALANINE, ...
Authors:Focht, D, Neumann, C, Lyons, J, Eguskiza Bilbao, A, Blunck, R, Malinauskaite, L, Schwarz, I.O, Javitch, J.A, Quick, M, Nissen, P.
Deposit date:2020-04-25
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A non-helical region in transmembrane helix 6 of hydrophobic amino acid transporter MhsT mediates substrate recognition.
Embo J., 40, 2021
6Z00
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BU of 6z00 by Molmil
Arabidopsis thaliana Naa50 in complex with bisubstrate analogue CoA-Ac-MVNAL
Descriptor: Acyl-CoA N-acyltransferases (NAT) superfamily protein, CARBOXYMETHYL COENZYME *A, MET-VAL-ASN-ALA-LEU
Authors:Weidenhausen, J, Kopp, J, Lapouge, K, Sinning, I.
Deposit date:2020-05-07
Release date:2020-12-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structural and functional characterization of the N-terminal acetyltransferase Naa50.
Structure, 29, 2021
1K3N
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BU of 1k3n by Molmil
NMR Structure of the FHA1 Domain of Rad53 in Complex with a Rad9-derived Phosphothreonine (at T155) Peptide
Descriptor: DNA repair protein Rad9, Protein Kinase SPK1
Authors:Yuan, C, Yongkiettrakul, S, Byeon, I.-J.L, Zhou, S, Tsai, M.-D.
Deposit date:2001-10-03
Release date:2001-12-05
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structures of two FHA1-phosphothreonine peptide complexes provide insight into the structural basis of the ligand specificity of FHA1 from yeast Rad53.
J.Mol.Biol., 314, 2001
6Z2D
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BU of 6z2d by Molmil
Crystal structure of wild type OgpA from Akkermansia muciniphila in P 41 21 2
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, O-glycan protease, ...
Authors:Trastoy, B, Naegali, A, Anso, I, Sjogren, J, Guerin, M.E.
Deposit date:2020-05-15
Release date:2020-09-30
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Structural basis of mammalian mucin processing by the human gut O-glycopeptidase OgpA from Akkermansia muciniphila.
Nat Commun, 11, 2020
6Z9G
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BU of 6z9g by Molmil
Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-03
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
1K4P
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BU of 1k4p by Molmil
Crystal Structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase in complex with zinc ions
Descriptor: 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase, SULFATE ION, ZINC ION
Authors:Liao, D.-I, Zheng, Y.-J, Viitanen, P.V, Jordan, D.B.
Deposit date:2001-10-08
Release date:2002-03-06
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural definition of the active site and catalytic mechanism of 3,4-dihydroxy-2-butanone-4-phosphate synthase.
Biochemistry, 41, 2002
6ZI7
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BU of 6zi7 by Molmil
Crystal structure of OleP-oleandolide(DEO) bound to L-rhamnose
Descriptor: (3~{R},4~{S},5~{R},6~{S},7~{S},9~{S},11~{R},12~{S},13~{R},14~{R})-3,5,7,9,11,13,14-heptamethyl-4,6,12-tris(oxidanyl)-1-oxacyclotetradecane-2,10-dione, Cytochrome P-450, FORMIC ACID, ...
Authors:Montemiglio, L.C, Savino, C, Vallone, B, Parisi, G, Freda, I.
Deposit date:2020-06-25
Release date:2020-10-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Dissecting the Cytochrome P450 OleP Substrate Specificity: Evidence for a Preferential Substrate.
Biomolecules, 10, 2020
4V18
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BU of 4v18 by Molmil
SeMet structure of a novel carbohydrate binding module from glycoside hydrolase family 5 glucanase from Ruminococcus flavefaciens FD-1
Descriptor: CARBOHYDRATE BINDING MODULE
Authors:Venditto, I, Centeno, M.S.J, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S.
Deposit date:2014-09-25
Release date:2016-01-20
Last modified:2016-07-13
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Complexity of the Ruminococcus Flavefaciens Cellulosome Reflects an Expansion in Glycan Recognition.
Proc.Natl.Acad.Sci.USA, 113, 2016
6ZA1
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BU of 6za1 by Molmil
Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2-hd
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, GLYCEROL, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-04
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
7SMJ
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BU of 7smj by Molmil
F2N structure, protein design with deep learning
Descriptor: AI-designed TIM-barrel F2N
Authors:Mathews, I.I, Anand-Achim, N, Huang, P.
Deposit date:2021-10-26
Release date:2022-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Protein sequence design with a learned potential.
Nat Commun, 13, 2022
4COT
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BU of 4cot by Molmil
The importance of the Abn2 calcium cluster in the endo-1,5- arabinanase activity from Bacillus subtilis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, EXTRACELLULAR ENDO-ALPHA-(1->5)-L-ARABINANASE 2, NICKEL (II) ION
Authors:McVey, C.E, Ferreira, M.J, Correia, B, Lahiri, S, deSanctis, D, Carrondo, M.A, Lindley, P.F, de Sa-Nogueira, I, Soares, C.M, Bento, I.
Deposit date:2014-01-31
Release date:2014-03-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Importance of the Abn2 Calcium Cluster in the Endo-1,5-Arabinanase Activity from Bacillus Subtilis.
J.Biol.Inorg.Chem., 19, 2014

224931

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