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PDB: 48 件

5GZV
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Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase, PHOSPHATE ION
著者Itoh, T, Hibi, T, Suzuki, F, Sugimoto, I, Fujiwara, A, Inaka, K, Tanaka, H, Ohta, K, Fujii, Y, Taketo, A, Kimoto, H.
登録日2016-10-01
公開日2016-12-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZU
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BU of 5gzu by Molmil
Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
分子名称: Chitinase, PHOSPHATE ION
著者Itoh, T, Hibi, T, Suzuki, F, Sugimoto, I, Fujiwara, A, Inaka, K, Tanaka, H, Ohta, K, Fujii, Y, Taketo, A, Kimoto, H.
登録日2016-10-01
公開日2016-12-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
7C7D
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BU of 7c7d by Molmil
Crystal structure of the catalytic unit of thermostable GH87 alpha-1,3-glucanase from Streptomyces thermodiastaticus strain HF3-3
分子名称: CALCIUM ION, PENTAETHYLENE GLYCOL, alpha-1,3-glucanase
著者Itoh, T, Panti, N, Toyotake, Y, Hayashi, J, Suyotha, W, Yano, S, Wakayama, M, Hibi, T.
登録日2020-05-25
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Crystal structure of the catalytic unit of thermostable GH87 alpha-1,3-glucanase from Streptomyces thermodiastaticus strain HF3-3.
Biochem.Biophys.Res.Commun., 533, 2020
6K5J
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BU of 6k5j by Molmil
Structure of a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GH3 beta-N-acetylglucosaminidase, GLYCEROL
著者Itoh, T, Araki, T, Nishiyama, T, Hibi, T, Kimoto, H.
登録日2019-05-29
公開日2019-09-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.903 Å)
主引用文献Structural and functional characterization of a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7.
J.Biochem., 166, 2019
3W6X
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BU of 3w6x by Molmil
Yeast N-acetyltransferase Mpr1 in complex with CHOP
分子名称: (4S)-4-hydroxy-L-proline, CHLORIDE ION, HEXAETHYLENE GLYCOL, ...
著者Nasuno, R, Hirano, Y, Itoh, T, Hakoshima, T, Hibi, T, Takagi, H.
登録日2013-02-25
公開日2013-08-07
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.299 Å)
主引用文献Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism
Proc.Natl.Acad.Sci.USA, 110, 2013
3W6S
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yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism
分子名称: HEXAETHYLENE GLYCOL, MAGNESIUM ION, MPR1 protein
著者Nasuno, R, Hirano, Y, Itoh, T, Hakoshima, T, Hibi, T, Takagi, H.
登録日2013-02-21
公開日2013-07-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism
Proc.Natl.Acad.Sci.USA, 110, 2013
6K0U
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Catalytic domain of GH87 alpha-1,3-glucanase D1068A in complex with tetrasaccharides
分子名称: Alpha-1,3-glucanase, CALCIUM ION, SULFATE ION, ...
著者Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
登録日2019-05-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
6K0M
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BU of 6k0m by Molmil
Catalytic domain of GH87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11
分子名称: Alpha-1,3-glucanase, CALCIUM ION, GLYCEROL, ...
著者Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
登録日2019-05-07
公開日2019-12-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
6K0Q
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BU of 6k0q by Molmil
Catalytic domain of GH87 alpha-1,3-glucanase D1068A in complex with nigerose
分子名称: ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ...
著者Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
登録日2019-05-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.564 Å)
主引用文献Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
6K0S
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BU of 6k0s by Molmil
Catalytic domain of GH87 alpha-1,3-glucanase D1069A in complex with nigerose
分子名称: ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ...
著者Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
登録日2019-05-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.534 Å)
主引用文献Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
6KFN
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BU of 6kfn by Molmil
Crystal structure of alginate lyase from Paenibacillus sp. str. FPU-7
分子名称: IMIDAZOLE, SODIUM ION, alginate lyase
著者Itoh, T, Nakagawa, E, Yoda, M, Nakaichi, A, Hibi, T, Kimoto, H.
登録日2019-07-08
公開日2019-10-30
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7.
Sci Rep, 9, 2019
6K0V
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BU of 6k0v by Molmil
Catalytic domain of GH87 alpha-1,3-glucanase D1069A in complex with tetrasaccharides
分子名称: Alpha-1,3-glucanase, CALCIUM ION, SULFATE ION, ...
著者Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
登録日2019-05-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.504 Å)
主引用文献Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
6K0P
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BU of 6k0p by Molmil
Catalytic domain of GH87 alpha-1,3-glucanase D1045A in complex with nigerose
分子名称: ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ...
著者Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
登録日2019-05-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.424 Å)
主引用文献Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
6K0N
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BU of 6k0n by Molmil
Catalytic domain of GH87 alpha-1,3-glucanase in complex with nigerose
分子名称: ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ...
著者Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T.
登録日2019-05-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
3W91
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BU of 3w91 by Molmil
crystal structure of SeMet-labeled yeast N-acetyltransferase Mpr1 L87M mutant
分子名称: MPR1 protein
著者Nasuno, R, Hirano, Y, Itoh, T, Hakoshima, T, Hibi, T, Takagi, H.
登録日2013-03-23
公開日2013-07-17
最終更新日2013-08-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism
Proc.Natl.Acad.Sci.USA, 110, 2013
7EHO
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BU of 7eho by Molmil
Chitin oligosaccharide binding protein
分子名称: Chitin oligosaccharide binding protein NagB2, TETRAETHYLENE GLYCOL
著者Itoh, T, Hibi, T, Kimoto, H.
登録日2021-03-30
公開日2021-07-07
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structural characterization of two solute-binding proteins for N,N' -diacetylchitobiose/ N,N',N'' -triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7.
J Struct Biol X, 5, 2021
7EHU
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BU of 7ehu by Molmil
Chitin oligosaccharide binding protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin oligosaccharide binding protein NagB2, DI(HYDROXYETHYL)ETHER
著者Itoh, T, Hibi, T, Kimoto, H.
登録日2021-03-30
公開日2021-07-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural characterization of two solute-binding proteins for N,N' -diacetylchitobiose/ N,N',N'' -triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7.
J Struct Biol X, 5, 2021
7EHP
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BU of 7ehp by Molmil
Chitin oligosaccharide binding protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, chitin oligosaccahride binding protein NagB1
著者Itoh, T, Hibi, T, Kimoto, H.
登録日2021-03-30
公開日2021-07-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Structural characterization of two solute-binding proteins for N,N' -diacetylchitobiose/ N,N',N'' -triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7.
J Struct Biol X, 5, 2021
7EHQ
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BU of 7ehq by Molmil
Chitin oligosaccharide binding protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin oligosaccharide binding protein NagB2
著者Itoh, T, Hibi, T, Kimoto, H.
登録日2021-03-30
公開日2021-07-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural characterization of two solute-binding proteins for N,N' -diacetylchitobiose/ N,N',N'' -triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7.
J Struct Biol X, 5, 2021
2N92
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Solution structure of cecropin P1 with LPS
分子名称: Cecropin-P1
著者Baek, M, Kamiya, M, Kushibiki, T, Nakazumi, T, Tomisawa, S, Abe, C, Kumaki, Y, Kikukawa, T, Demura, M, Kawano, K, Aizawa, T.
登録日2015-11-04
公開日2016-11-09
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Lipopolysaccharide bound structure of antimicrobial peptide cecropin P1 by NMR spectroscopy
To be Published
2ZV6
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BU of 2zv6 by Molmil
Crystal structure of human squamous cell carcinoma antigen 1
分子名称: Serpin B3
著者Zheng, B, Matoba, Y, Katagiri, C, Hibino, T, Sugiyama, M.
登録日2008-11-01
公開日2009-02-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of SCCA1 and insight about the interaction with JNK1
Biochem.Biophys.Res.Commun., 380, 2009
1BYO
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WILD-TYPE PLASTOCYANIN FROM SILENE
分子名称: COPPER (II) ION, PROTEIN (PLASTOCYANIN)
著者Sugawara, H, Inoue, T, Li, C, Gotowda, M, Hibino, T, Takabe, T, Kai, Y.
登録日1998-10-19
公開日1999-10-15
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999
1BYP
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E43K,D44K DOUBLE MUTANT PLASTOCYANIN FROM SILENE
分子名称: COPPER (II) ION, PROTEIN (PLASTOCYANIN)
著者Sugawara, H, Inoue, T, Li, C, Gotowda, M, Hibino, T, Takabe, T, Kai, Y.
登録日1998-10-19
公開日1999-10-19
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999
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