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PDB: 28 results

5MB9
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BU of 5mb9 by Molmil
Crystal structure of the eukaryotic ribosome associated complex (RAC), a unique Hsp70/Hsp40 pair
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Gumiero, A, Weyer, F.A, Valentin Gese, G, Lapouge, K, Sinning, I.
Deposit date:2016-11-07
Release date:2016-12-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into a unique Hsp70-Hsp40 interaction in the eukaryotic ribosome-associated complex.
Nat. Struct. Mol. Biol., 24, 2017
3ZCG
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BU of 3zcg by Molmil
Ascorbate peroxidase W41A-H42C mutant
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ASCORBATE PEROXIDASE, POTASSIUM ION, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2012-11-20
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.491 Å)
Cite:Probing the Conformational Mobility of the Active Site of a Heme Peroxidase.
Dalton Trans, 42, 2013
5TKY
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BU of 5tky by Molmil
Crystal structure of the co-translational Hsp70 chaperone Ssb in the ATP-bound, open conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Putative uncharacterized protein
Authors:Gumiero, A, Gese, G.V, Weyer, F.A, Lapouge, K, Sinning, I.
Deposit date:2016-10-10
Release date:2016-11-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Interaction of the cotranslational Hsp70 Ssb with ribosomal proteins and rRNA depends on its lid domain.
Nat Commun, 7, 2016
4B7G
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BU of 4b7g by Molmil
Structure of a bacterial catalase
Descriptor: CATALASE, CHLORIDE ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Gumiero, A, Walsh, M.
Deposit date:2012-08-20
Release date:2013-08-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Structural and Dynamic Investigation of the Inhibition of Catalase by Nitric Oxide.
Org.Biomol.Chem., 11, 2013
4B7H
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BU of 4b7h by Molmil
Structure of a highdose liganded bacterial catalase
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CATALASE, CHLORIDE ION, ...
Authors:Gumiero, A, Walsh, M.
Deposit date:2012-08-20
Release date:2013-08-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:A Structural and Dynamic Investigation of the Inhibition of Catalase by Nitric Oxide.
Org.Biomol.Chem., 11, 2013
4B7F
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BU of 4b7f by Molmil
Structure of a liganded bacterial catalase
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Gumiero, A, Walsh, M.
Deposit date:2012-08-20
Release date:2013-08-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A Structural and Dynamic Investigation of the Inhibition of Catalase by Nitric Oxide.
Org.Biomol.Chem., 11, 2013
2XIL
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BU of 2xil by Molmil
The structure of cytochrome c peroxidase Compound I
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CYTOCHROME C PEROXIDASE, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2010-06-30
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Nature of the ferryl heme in compounds I and II.
J. Biol. Chem., 286, 2011
2XJ5
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BU of 2xj5 by Molmil
The structure of cytochrome c peroxidase Compound II
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTOCHROME C PEROXIDASE, MITOCHONDRIAL, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2010-07-02
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Nature of the ferryl heme in compounds I and II.
J. Biol. Chem., 286, 2011
2YCG
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BU of 2ycg by Molmil
Structure of unreduced ferric cytochrome c peroxidase obtained by multicrystal method
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTOCHROME C PEROXIDASE, MITOCHONDRIAL, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2011-03-14
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Hydrogen Bonds in Ferric Cytochrome C Peroxidase: A Combined X-Ray and Neutron Study
To be Published
2XJ8
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BU of 2xj8 by Molmil
The structure of ferrous cytochrome c peroxidase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTOCHROME C PEROXIDASE, MITOCHONDRIAL, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2010-07-02
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Nature of the ferryl heme in compounds I and II.
J. Biol. Chem., 286, 2011
2XIF
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BU of 2xif by Molmil
The structure of ascorbate peroxidase Compound II
Descriptor: ASCORBATE PEROXIDASE, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2010-06-29
Release date:2010-07-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nature of the ferryl heme in compounds I and II.
J. Biol. Chem., 286, 2011
2XI6
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BU of 2xi6 by Molmil
The structure of ascorbate peroxidase Compound I
Descriptor: ASCORBATE PEROXIDASE, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2010-06-29
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nature of the ferryl heme in compounds I and II.
J. Biol. Chem., 286, 2011
2XIH
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BU of 2xih by Molmil
The structure of ascorbate peroxidase Compound III
Descriptor: ASCORBATE PEROXIDASE, OXYGEN MOLECULE, POTASSIUM ION, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2010-06-29
Release date:2010-07-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nature of the ferryl heme in compounds I and II.
J. Biol. Chem., 286, 2011
2XJ6
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BU of 2xj6 by Molmil
The structure of ferrous ascorbate peroxidase
Descriptor: ASCORBATE PEROXIDASE, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2010-07-02
Release date:2010-07-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Nature of the ferryl heme in compounds I and II.
J. Biol. Chem., 286, 2011
3ZCH
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BU of 3zch by Molmil
Ascorbate peroxidase W41A-H42M mutant
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ASCORBATE PEROXIDASE, POTASSIUM ION, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2012-11-20
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Probing the Conformational Mobility of the Active Site of Ascorbate Peroxidase
Dalton Trans, 42, 2013
3ZCY
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BU of 3zcy by Molmil
Ascorbate peroxidase W41A-H42Y mutant
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ASCORBATE PEROXIDASE, POTASSIUM ION, ...
Authors:Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2012-11-23
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Probing the Conformational Mobility of the Active Site of Ascorbate Peroxidase
Dalton Trans, 42, 2013
5BY8
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BU of 5by8 by Molmil
The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis
Descriptor: Rpf2, Rrs1
Authors:Kharde, S, Calvino, F.R, Gumiero, A, Wild, K, Sinning, I.
Deposit date:2015-06-10
Release date:2015-07-08
Last modified:2015-08-26
Method:X-RAY DIFFRACTION (1.515 Å)
Cite:The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis.
Nucleic Acids Res., 43, 2015
5NNP
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BU of 5nnp by Molmil
Structure of Naa15/Naa10 bound to HypK-THB
Descriptor: CARBOXYMETHYL COENZYME *A, GLYCEROL, N-terminal acetyltransferase-like protein, ...
Authors:Weyer, F.A, Gumiero, A, Kopp, J, Sinning, I.
Deposit date:2017-04-10
Release date:2017-06-14
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Structural basis of HypK regulating N-terminal acetylation by the NatA complex.
Nat Commun, 8, 2017
5NNR
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BU of 5nnr by Molmil
Structure of Naa15/Naa10 bound to HypK-THB
Descriptor: HypK, N-terminal acetyltransferase-like protein, Naa10
Authors:Weyer, F.A, Gumiero, A, Kopp, J, Sinning, I.
Deposit date:2017-04-10
Release date:2017-06-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of HypK regulating N-terminal acetylation by the NatA complex.
Nat Commun, 8, 2017
3R99
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BU of 3r99 by Molmil
Joint Neutron and X-ray structure of Cytochrome c peroxidase
Descriptor: Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Blakeley, M.P, Fisher, S.J, Gumiero, A, Moody, P.C.E, Raven, E.L.
Deposit date:2011-03-25
Release date:2012-04-04
Last modified:2024-03-20
Method:NEUTRON DIFFRACTION (2.4 Å), X-RAY DIFFRACTION
Cite:Hydrogen bonds in heme peroxidases: a combined X-ray and neutron study of cytochrome c peroxidase
To be Published
3R98
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BU of 3r98 by Molmil
Joint Neutron and X-ray structure of Cytochrome c peroxidase
Descriptor: Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Blakeley, M.P, Fisher, S.J, Gumiero, A, Moody, P.C.E, Raven, E.L.
Deposit date:2011-03-25
Release date:2012-04-04
Last modified:2024-03-20
Method:NEUTRON DIFFRACTION (2.4 Å), X-RAY DIFFRACTION
Cite:Hydrogen bonds in heme peroxidases: a combined X-ray and neutron study of cytochrome c peroxidase
To be Published
4CVJ
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BU of 4cvj by Molmil
Neutron Structure of Compound I intermediate of Cytochrome c Peroxidase - Deuterium exchanged 100 K
Descriptor: CYTOCHROME C PEROXIDASE, MITOCHONDRIAL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Casadei, C.M, Gumiero, A, Blakeley, M.P, Ostermann, A, Raven, E.L, Moody, P.C.E.
Deposit date:2014-03-27
Release date:2014-07-16
Last modified:2024-05-08
Method:NEUTRON DIFFRACTION (2.182 Å), X-RAY DIFFRACTION
Cite:Neutron Cryo-Crystallography Captures the Protonation State of Ferryl Heme in a Peroxidase
Science, 345, 2014
4CVI
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BU of 4cvi by Molmil
Neutron Structure of Ferric Cytochrome c Peroxidase - Deuterium exchanged at room temperature
Descriptor: CYTOCHROME C PEROXIDASE, MITOCHONDRIAL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Casadei, C.M, Gumiero, A, Blakeley, M.P, Ostermann, A, Raven, E.L, Moody, P.C.E.
Deposit date:2014-03-27
Release date:2014-07-16
Last modified:2024-05-08
Method:NEUTRON DIFFRACTION (2.1 Å), X-RAY DIFFRACTION
Cite:Neutron Cryo-Crystallography Captures the Protonation State of Ferryl Heme in a Peroxidase
Science, 345, 2014
2WD4
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BU of 2wd4 by Molmil
Ascorbate Peroxidase as a heme oxygenase: w41A variant product with t-butyl peroxide
Descriptor: 3-[2-[[3-(2-CARBOXYETHYL)-5-[[3-ETHENYL-4-METHYL-5-[(2-METHYLPROPAN-2-YL)OXY]-1H-PYRROL-2-YL]METHYL]-4-METHYL-1H-PYRROL -2-YL]METHYL]-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXO-PYRROL-2-YLIDENE)METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC ACID, ASCORBATE PEROXIDASE, FE (III) ION, ...
Authors:Badyal, S.K, Metcalfe, C.L, Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2009-03-19
Release date:2009-04-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Evidence for Heme Oxygenase Activity in a Heme Peroxidase.
Biochemistry, 48, 2009
2Y6B
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BU of 2y6b by Molmil
Ascorbate Peroxidase R38K mutant
Descriptor: ASCORBATE PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Metcalfe, C.L, Efimov, I, Gumiero, A, Raven, E.L, Moody, P.C.E.
Deposit date:2011-01-20
Release date:2011-10-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Proton Delivery to Ferryl Heme in a Heme Peroxidase: Enzymatic Use of the Grotthuss Mechanism.
J.Am.Chem.Soc., 133, 2011

 

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