7FCR
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7FCS
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5GIV
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![BU of 5giv by Molmil](/molmil-images/mine/5giv) | Crystal structure of M32 carboxypeptidase from Deinococcus radiodurans R1 | Descriptor: | ACETATE ION, Carboxypeptidase 1, ZINC ION | Authors: | Sharma, B, Singh, R, Yadav, P, Ghosh, B, Kumar, A, Jamdar, S.N, Makde, R.D. | Deposit date: | 2016-06-25 | Release date: | 2017-07-12 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Active site gate of M32 carboxypeptidases illuminated by crystal structure and molecular dynamics simulations Biochim. Biophys. Acta, 1865, 2017
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4R60
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![BU of 4r60 by Molmil](/molmil-images/mine/4r60) | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris | Descriptor: | MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ... | Authors: | Kumar, A, Ghosh, B, Are, V.N, Jamdar, S.N, Makde, R.D, Sharma, S.M. | Deposit date: | 2014-08-22 | Release date: | 2014-09-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris to be published
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5X49
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![BU of 5x49 by Molmil](/molmil-images/mine/5x49) | Crystal Structure of Human mitochondrial X-prolyl Aminopeptidase (XPNPEP3) | Descriptor: | (2S,3R)-3-amino-2-hydroxy-4-phenylbutanoic acid, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ... | Authors: | Singh, R, Kumar, A, Ghosh, B, Jamdar, S, Makde, R.D. | Deposit date: | 2017-02-10 | Release date: | 2017-05-17 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Structure of the human aminopeptidase XPNPEP3 and comparison of its in vitro activity with Icp55 orthologs: Insights into diverse cellular processes. J. Biol. Chem., 292, 2017
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5YSC
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5XEV
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![BU of 5xev by Molmil](/molmil-images/mine/5xev) | Crystal Structure of a novel Xaa-Pro dipeptidase from Deinococcus radiodurans | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ... | Authors: | Are, V.N, Kumar, A, Ghosh, B, Makde, R.D. | Deposit date: | 2017-04-06 | Release date: | 2017-10-18 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Crystal structure of a novel prolidase from Deinococcus radiodurans identifies new subfamily of bacterial prolidases. Proteins, 85, 2017
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6A8M
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![BU of 6a8m by Molmil](/molmil-images/mine/6a8m) | N-terminal domain of FACT complex subunit SPT16 from Eremothecium gossypii (Ashbya gossypii) | Descriptor: | FACT complex subunit SPT16 | Authors: | Gaur, N.K, Are, V.N, Durani, V, Ghosh, B, Kumar, A, Kulkarni, K, Makde, R.D. | Deposit date: | 2018-07-09 | Release date: | 2018-08-15 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Evolutionary conservation of protein dynamics: insights from all-atom molecular dynamics simulations of 'peptidase' domain of Spt16. J.Biomol.Struct.Dyn., 2021
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5GIU
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![BU of 5giu by Molmil](/molmil-images/mine/5giu) | Crystal structure of Xaa-Pro peptidase from Deinococcus radiodurans, metal-free active site | Descriptor: | PHOSPHATE ION, Proline dipeptidase, SODIUM ION | Authors: | Are, V.N, Kumar, A, Singh, R, Ghosh, B, Jamdar, S.N, Makde, R.D. | Deposit date: | 2016-06-25 | Release date: | 2017-06-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.61 Å) | Cite: | Xaa-Pro peptidase from Deinococcus radiodurans, metal-free active site To Be Published
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5FCH
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![BU of 5fch by Molmil](/molmil-images/mine/5fch) | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris, phosphate and Zn bound | Descriptor: | DI(HYDROXYETHYL)ETHER, GLY-GLY-GLY, GLYCEROL, ... | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D. | Deposit date: | 2015-12-15 | Release date: | 2016-12-07 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases Biochim. Biophys. Acta, 1865, 2017
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5FCF
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![BU of 5fcf by Molmil](/molmil-images/mine/5fcf) | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris, phosphate and Mn bound | Descriptor: | DI(HYDROXYETHYL)ETHER, GLY-GLY-GLY, GLYCEROL, ... | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D. | Deposit date: | 2015-12-15 | Release date: | 2016-12-07 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases. Biochim. Biophys. Acta, 1865, 2017
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5GIQ
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![BU of 5giq by Molmil](/molmil-images/mine/5giq) | Xaa-Pro peptidase from Deinococcus radiodurans, Zinc bound | Descriptor: | PHOSPHATE ION, Proline dipeptidase, ZINC ION | Authors: | Are, V.N, Singh, R, Kumar, A, Ghosh, B, Jamdar, S.N, Makde, R.D. | Deposit date: | 2016-06-24 | Release date: | 2017-06-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases. Proteins, 2018
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5CDE
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![BU of 5cde by Molmil](/molmil-images/mine/5cde) | R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris | Descriptor: | Proline dipeptidase, SULFATE ION, ZINC ION | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R. | Deposit date: | 2015-07-03 | Release date: | 2016-09-14 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution To Be Published
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5CDL
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![BU of 5cdl by Molmil](/molmil-images/mine/5cdl) | Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative) | Descriptor: | MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R. | Deposit date: | 2015-07-04 | Release date: | 2016-08-10 | Last modified: | 2018-07-04 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative) To Be Published
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5CNX
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![BU of 5cnx by Molmil](/molmil-images/mine/5cnx) | Crystal structure of Xaa-Pro aminopeptidase from Escherichia coli K12 | Descriptor: | Aminopeptidase YpdF, CACODYLATE ION, GLYCEROL, ... | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D. | Deposit date: | 2015-07-18 | Release date: | 2016-07-20 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases Proteins, 2018
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5CE6
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![BU of 5ce6 by Molmil](/molmil-images/mine/5ce6) | N-terminal domain of FACT complex subunit SPT16 from Cicer arietinum (chickpea) | Descriptor: | ACETATE ION, FACT-Spt16, POTASSIUM ION, ... | Authors: | Are, V.N, Ghosh, B, Kumar, A, Makde, R. | Deposit date: | 2015-07-06 | Release date: | 2016-04-13 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure and dynamics of Spt16N-domain of FACT complex from Cicer arietinum. Int.J.Biol.Macromol., 88, 2016
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5CIK
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![BU of 5cik by Molmil](/molmil-images/mine/5cik) | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition | Descriptor: | CITRIC ACID, GLYCEROL, Proline dipeptidase | Authors: | Kumar, A, Are, V, Ghosh, B, Agrawal, U, Jamdar, S, Makde, R.D. | Deposit date: | 2015-07-13 | Release date: | 2016-07-20 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition To Be Published
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5CDV
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![BU of 5cdv by Molmil](/molmil-images/mine/5cdv) | Proline dipeptidase from Deinococcus radiodurans R1 | Descriptor: | MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ... | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R. | Deposit date: | 2015-07-05 | Release date: | 2016-08-10 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Proline dipeptidase from Deinococcus radiodurans R1 at 1.45 Angstrom resolution To Be Published
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5KHL
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5YZO
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![BU of 5yzo by Molmil](/molmil-images/mine/5yzo) | Crystal structure of S9 peptidase mutant (S514A) from Deinococcus radiodurans R1 | Descriptor: | Acyl-peptide hydrolase, putative, DIMETHYL SULFOXIDE, ... | Authors: | Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D. | Deposit date: | 2017-12-15 | Release date: | 2018-11-14 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms. J.Biol.Chem., 294, 2019
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5YZN
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![BU of 5yzn by Molmil](/molmil-images/mine/5yzn) | Crystal structure of S9 peptidase (active form) from Deinococcus radiodurans R1 | Descriptor: | Acyl-peptide hydrolase, putative | Authors: | Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D. | Deposit date: | 2017-12-15 | Release date: | 2018-11-14 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms. J.Biol.Chem., 294, 2019
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5YZM
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![BU of 5yzm by Molmil](/molmil-images/mine/5yzm) | Crystal structure of S9 peptidase (inactive form) from Deinococcus radiodurans R1 | Descriptor: | ACETATE ION, Acyl-peptide hydrolase, putative | Authors: | Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D. | Deposit date: | 2017-12-15 | Release date: | 2018-11-14 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms. J.Biol.Chem., 294, 2019
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5GGY
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5GGX
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