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PDB: 24 件
4R60
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BU of 4r60 by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
分子名称: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ...
著者Kumar, A, Ghosh, B, Are, V.N, Jamdar, S.N, Makde, R.D, Sharma, S.M.
登録日2014-08-22
公開日2014-09-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
to be published
5X49
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BU of 5x49 by Molmil
Crystal Structure of Human mitochondrial X-prolyl Aminopeptidase (XPNPEP3)
分子名称: (2S,3R)-3-amino-2-hydroxy-4-phenylbutanoic acid, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
著者Singh, R, Kumar, A, Ghosh, B, Jamdar, S, Makde, R.D.
登録日2017-02-10
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure of the human aminopeptidase XPNPEP3 and comparison of its in vitro activity with Icp55 orthologs: Insights into diverse cellular processes.
J. Biol. Chem., 292, 2017
5XEV
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BU of 5xev by Molmil
Crystal Structure of a novel Xaa-Pro dipeptidase from Deinococcus radiodurans
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
著者Are, V.N, Kumar, A, Ghosh, B, Makde, R.D.
登録日2017-04-06
公開日2017-10-18
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of a novel prolidase from Deinococcus radiodurans identifies new subfamily of bacterial prolidases.
Proteins, 85, 2017
5YSC
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BU of 5ysc by Molmil
Crystal Structure of periplasmic Vitamin B12 binding protein BtuF of Vibrio cholerae
分子名称: CYANOCOBALAMIN, SULFATE ION, Vitamin B12-binding protein
著者Agarwal, S, Ghosh, B, Dasgupta, J.
登録日2017-11-13
公開日2018-09-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.673 Å)
主引用文献Mechanistic basis of vitamin B12 and cobinamide salvaging by the Vibrio species.
Biochim Biophys Acta Proteins Proteom, 1867, 2019
7FCR
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BU of 7fcr by Molmil
Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
分子名称: Apolipoprotein E, SODIUM ION
著者Cherakara, S, Kumar, A, Garai, K, Ghosh, B.
登録日2021-07-15
公開日2022-07-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
To be published
7FCS
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BU of 7fcs by Molmil
Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
分子名称: Apolipoprotein E, SODIUM ION
著者Cherakara, S, Kumar, A, Garai, K, Ghosh, B.
登録日2021-07-15
公開日2022-07-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
To be published
5GIV
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BU of 5giv by Molmil
Crystal structure of M32 carboxypeptidase from Deinococcus radiodurans R1
分子名称: ACETATE ION, Carboxypeptidase 1, ZINC ION
著者Sharma, B, Singh, R, Yadav, P, Ghosh, B, Kumar, A, Jamdar, S.N, Makde, R.D.
登録日2016-06-25
公開日2017-07-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Active site gate of M32 carboxypeptidases illuminated by crystal structure and molecular dynamics simulations
Biochim. Biophys. Acta, 1865, 2017
6A8M
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BU of 6a8m by Molmil
N-terminal domain of FACT complex subunit SPT16 from Eremothecium gossypii (Ashbya gossypii)
分子名称: FACT complex subunit SPT16
著者Gaur, N.K, Are, V.N, Durani, V, Ghosh, B, Kumar, A, Kulkarni, K, Makde, R.D.
登録日2018-07-09
公開日2018-08-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Evolutionary conservation of protein dynamics: insights from all-atom molecular dynamics simulations of 'peptidase' domain of Spt16.
J.Biomol.Struct.Dyn., 2021
5FCH
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BU of 5fch by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris, phosphate and Zn bound
分子名称: DI(HYDROXYETHYL)ETHER, GLY-GLY-GLY, GLYCEROL, ...
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D.
登録日2015-12-15
公開日2016-12-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases
Biochim. Biophys. Acta, 1865, 2017
5GIQ
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BU of 5giq by Molmil
Xaa-Pro peptidase from Deinococcus radiodurans, Zinc bound
分子名称: PHOSPHATE ION, Proline dipeptidase, ZINC ION
著者Are, V.N, Singh, R, Kumar, A, Ghosh, B, Jamdar, S.N, Makde, R.D.
登録日2016-06-24
公開日2017-06-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases.
Proteins, 2018
5FCF
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BU of 5fcf by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris, phosphate and Mn bound
分子名称: DI(HYDROXYETHYL)ETHER, GLY-GLY-GLY, GLYCEROL, ...
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D.
登録日2015-12-15
公開日2016-12-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases.
Biochim. Biophys. Acta, 1865, 2017
5GIU
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BU of 5giu by Molmil
Crystal structure of Xaa-Pro peptidase from Deinococcus radiodurans, metal-free active site
分子名称: PHOSPHATE ION, Proline dipeptidase, SODIUM ION
著者Are, V.N, Kumar, A, Singh, R, Ghosh, B, Jamdar, S.N, Makde, R.D.
登録日2016-06-25
公開日2017-06-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Xaa-Pro peptidase from Deinococcus radiodurans, metal-free active site
To Be Published
5CDE
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BU of 5cde by Molmil
R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris
分子名称: Proline dipeptidase, SULFATE ION, ZINC ION
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
登録日2015-07-03
公開日2016-09-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution
To Be Published
5CDL
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BU of 5cdl by Molmil
Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
分子名称: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
登録日2015-07-04
公開日2016-08-10
最終更新日2018-07-04
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
To Be Published
5CDV
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BU of 5cdv by Molmil
Proline dipeptidase from Deinococcus radiodurans R1
分子名称: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ...
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
登録日2015-07-05
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Proline dipeptidase from Deinococcus radiodurans R1 at 1.45 Angstrom resolution
To Be Published
5CNX
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BU of 5cnx by Molmil
Crystal structure of Xaa-Pro aminopeptidase from Escherichia coli K12
分子名称: Aminopeptidase YpdF, CACODYLATE ION, GLYCEROL, ...
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D.
登録日2015-07-18
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
Proteins, 2018
5CE6
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BU of 5ce6 by Molmil
N-terminal domain of FACT complex subunit SPT16 from Cicer arietinum (chickpea)
分子名称: ACETATE ION, FACT-Spt16, POTASSIUM ION, ...
著者Are, V.N, Ghosh, B, Kumar, A, Makde, R.
登録日2015-07-06
公開日2016-04-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure and dynamics of Spt16N-domain of FACT complex from Cicer arietinum.
Int.J.Biol.Macromol., 88, 2016
5CIK
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BU of 5cik by Molmil
Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
分子名称: CITRIC ACID, GLYCEROL, Proline dipeptidase
著者Kumar, A, Are, V, Ghosh, B, Agrawal, U, Jamdar, S, Makde, R.D.
登録日2015-07-13
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition
To Be Published
5KHL
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BU of 5khl by Molmil
Crystal Structure of periplasmic Heme binding protein HutB of Vibrio cholerae
分子名称: Hemin ABC transporter, periplasmic hemin-binding protein HutB, SULFATE ION
著者Agarwal, S, Dey, S, Ghosh, B, Dasgupta, J.
登録日2016-06-15
公開日2017-02-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.397 Å)
主引用文献Crystal Structure of periplasmic Heme binding protein HutB of Vibrio cholerae
To be published
5YZO
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BU of 5yzo by Molmil
Crystal structure of S9 peptidase mutant (S514A) from Deinococcus radiodurans R1
分子名称: Acyl-peptide hydrolase, putative, DIMETHYL SULFOXIDE, ...
著者Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D.
登録日2017-12-15
公開日2018-11-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
5YZN
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BU of 5yzn by Molmil
Crystal structure of S9 peptidase (active form) from Deinococcus radiodurans R1
分子名称: Acyl-peptide hydrolase, putative
著者Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D.
登録日2017-12-15
公開日2018-11-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
5YZM
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BU of 5yzm by Molmil
Crystal structure of S9 peptidase (inactive form) from Deinococcus radiodurans R1
分子名称: ACETATE ION, Acyl-peptide hydrolase, putative
著者Yadav, P, Jamdar, S.N, Kumar, A, Ghosh, B, Makde, R.D.
登録日2017-12-15
公開日2018-11-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms.
J.Biol.Chem., 294, 2019
5GGX
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BU of 5ggx by Molmil
Crystal Structure of Fe3+ - Desferal bound siderophore binding protein FhuD from Vibrio cholerae
分子名称: DEFEROXAMINE MESYLATE FE(III) COMPLEX, Iron(III) ABC transporter, periplasmic iron-compound-binding protein
著者Agarwal, S, Dey, S, Ghosh, B, Dasgupta, J.
登録日2016-06-16
公開日2017-02-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Crystal Structure of Fe3+ - Desferal bound siderophore binding protein FhuD from Vibrio cholerae
To be published
5GGY
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BU of 5ggy by Molmil
X-ray crystal structure of Periplasmic Desferal binding protein FhuD from Vibrio cholerae
分子名称: CHLORIDE ION, Iron(III) ABC transporter, periplasmic iron-compound-binding protein
著者Agarwal, S, Dey, S, Ghosh, B, Dasgupta, J.
登録日2016-06-16
公開日2017-02-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献X-ray crystal structure of Periplasmic Desferal binding protein FhuD from Vibrio cholerae
To be published

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