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PDB: 104 results

3WVA
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BU of 3wva by Molmil
SeMet-labelled HcgF from Methanocaldococcus jannaschii
Descriptor: UPF0254 protein MJ1251
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-05-16
Release date:2015-04-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WSI
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BU of 3wsi by Molmil
EDTA-treated, reduced HcgD from Methanocaldococcus jannaschii
Descriptor: FE (II) ION, PHOSPHATE ION, Putative GTP cyclohydrolase 1 type 2
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-03-13
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
3WSG
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BU of 3wsg by Molmil
Reduced HcgD from Methanocaldococcus jannaschii with citrate
Descriptor: CITRIC ACID, FE (II) ION, Putative GTP cyclohydrolase 1 type 2
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-03-13
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
3WV7
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BU of 3wv7 by Molmil
HcgE from Methanothermobacter marburgensis
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Hmd co-occurring protein HcgE
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-05-16
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WB0
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BU of 3wb0 by Molmil
HcgB from Methanocaldococcus jannaschii in complex with light-decomposed FeGP cofactor of [Fe]-hydrogenase
Descriptor: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, Uncharacterized protein MJ0488
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2013-05-10
Release date:2014-02-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
3WSF
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BU of 3wsf by Molmil
Oxidized HcgD from Methanocaldococcus jannaschii with citrate
Descriptor: CITRIC ACID, FE (III) ION, Putative GTP cyclohydrolase 1 type 2
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-03-13
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
3WVB
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BU of 3wvb by Molmil
HcgF from Methanocaldococcus jannaschii
Descriptor: UPF0254 protein MJ1251
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-05-16
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WSH
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BU of 3wsh by Molmil
EDTA-treated, oxidized HcgD from Methanocaldococcus jannaschii
Descriptor: FE (III) ION, Putative GTP cyclohydrolase 1 type 2, SULFATE ION
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-03-13
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
6KFY
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BU of 6kfy by Molmil
SufS from Bacillus subtilis in a resting state at 1.96 angstrom resolution
Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, SULFATE ION, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2019-07-09
Release date:2020-07-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms.
Febs J., 2022
6KG1
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BU of 6kg1 by Molmil
NifS from Helicobacter pylori, soaked with L-cysteine for 180 sec
Descriptor: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, CHLORIDE ION, Cysteine desulfurase IscS, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2019-07-09
Release date:2019-10-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
6KG0
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BU of 6kg0 by Molmil
NifS from Helicobacter pylori, soaked with L-cysteine for 118 sec
Descriptor: CHLORIDE ION, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, ...
Authors:Nakamura, R, Takahashi, Y, Fujishiro, T.
Deposit date:2019-07-09
Release date:2019-10-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
8I55
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BU of 8i55 by Molmil
Wild-type CfbA at 1.99 angstrom resolution
Descriptor: Sirohydrochlorin cobaltochelatase
Authors:Ogawa, S, Fujishiro, T.
Deposit date:2023-01-24
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Substrate selectivity of CfbA
To be published
8I56
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BU of 8i56 by Molmil
CfbA S11T variant
Descriptor: Sirohydrochlorin cobaltochelatase
Authors:Ogawa, S, Fujishiro, T.
Deposit date:2023-01-24
Release date:2024-01-31
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Substrate selectivity of CfbA
To be published
8I58
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BU of 8i58 by Molmil
Uroporphyrin I (UPI)-bound CfbA
Descriptor: 3-[(1Z,9Z)-3,8,13,18-tetrakis(2-hydroxy-2-oxoethyl)-7,12,17-tris(3-hydroxy-3-oxopropyl)-21,23-dihydroporphyrin-2-yl]propanoic acid, Sirohydrochlorin cobaltochelatase
Authors:Ogawa, S, Fujishiro, T.
Deposit date:2023-01-24
Release date:2024-01-31
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Substrate selectivity of CfbA
To be published
8I57
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BU of 8i57 by Molmil
Uroporphyrin III (UPIII)-bound CfbA
Descriptor: 3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, Sirohydrochlorin cobaltochelatase
Authors:Ogawa, S, Fujishiro, T.
Deposit date:2023-01-24
Release date:2024-01-31
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Substrate selectivity of CfbA
To be published
8IYU
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BU of 8iyu by Molmil
CfbA S11T variant with Ni(II) ions
Descriptor: NICKEL (II) ION, Sirohydrochlorin cobaltochelatase
Authors:Ogawa, S, Fujishiro, T.
Deposit date:2023-04-06
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate selectivity of CfbA
To be published
5ZSS
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BU of 5zss by Molmil
L-Cysteine-PLP reaction intermediate of NifS from Hydrogenimonas thermophila
Descriptor: Cysteine desulfurase, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
Authors:Nakamura, T, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZS9
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BU of 5zs9 by Molmil
SufS from Bacillus subtilis in the resting state
Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-28
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
2ZQJ
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BU of 2zqj by Molmil
Substrate-Free Form of Cytochrome P450BSbeta
Descriptor: Cytochrome P450 152A1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Shoji, O, Fujishiro, T, Nagano, S, Hirose, T, Shiro, Y, Watanabe, Y.
Deposit date:2008-08-11
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Understanding substrate misrecognition of hydrogen peroxide dependent cytochrome P450 from Bacillus subtilis.
J.Biol.Inorg.Chem., 2010
5ZSR
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BU of 5zsr by Molmil
NifS from Hydrogenimonas thermophila, soaked with L-cysteine for 8 min
Descriptor: Cysteine desulfurase
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZST
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BU of 5zst by Molmil
NifS from Hydrogenimonas thermopile in a persulfurated form
Descriptor: Cysteine desulfurase
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
5ZSQ
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BU of 5zsq by Molmil
NifS from Hydrogenimonas thermophila, soaked with L-cysteine for 4 min
Descriptor: Cysteine desulfurase
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.211 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
5ZSK
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BU of 5zsk by Molmil
SufS from Bacillus subtilis soaked with L-cysteine for 63 sec
Descriptor: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, Cysteine desulfurase SufS
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-28
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
5ZSP
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BU of 5zsp by Molmil
NifS from Hydrogenimonas thermophila
Descriptor: Cysteine desulfurase
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020
5ZSO
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BU of 5zso by Molmil
SufS from Bacillus subtilis, soaked with L-cysteine for 90 sec
Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
Authors:Nakamura, R, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 287, 2020

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數據於2024-10-16公開中

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