3WB2
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![BU of 3wb2 by Molmil](/molmil-images/mine/3wb2) | HcgB from Methanocaldococcus jannaschii in complex with the guanylyl-pyridinol product in a model reaction of [Fe]-hydrogenase cofactor biosynthesis | 分子名称: | 5'-O-[(R)-[(3,6-dimethyl-2-oxo-1,2-dihydropyridin-4-yl)oxy](hydroxy)phosphoryl]guanosine, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | 著者 | Fujishiro, T, Ermler, U, Shima, S. | 登録日 | 2013-05-11 | 公開日 | 2014-02-05 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.44 Å) | 主引用文献 | Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis. Angew.Chem.Int.Ed.Engl., 52, 2013
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3WSE
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![BU of 3wse by Molmil](/molmil-images/mine/3wse) | |
3WSF
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![BU of 3wsf by Molmil](/molmil-images/mine/3wsf) | |
3WVB
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3WVC
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![BU of 3wvc by Molmil](/molmil-images/mine/3wvc) | Guanylylpyridinol (GP)-bound HcgF from Methanocaldococcus jannaschii | 分子名称: | 5'-O-[(R)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxo-2-sulfanylethyl)pyridin-4-yl]oxy}phosphoryl]guanosine, 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, SULFATE ION, ... | 著者 | Fujishiro, T, Ermler, U, Shima, S. | 登録日 | 2014-05-16 | 公開日 | 2015-04-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor Nat Commun, 6, 2015
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3WVA
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3WSH
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![BU of 3wsh by Molmil](/molmil-images/mine/3wsh) | EDTA-treated, oxidized HcgD from Methanocaldococcus jannaschii | 分子名称: | FE (III) ION, Putative GTP cyclohydrolase 1 type 2, SULFATE ION | 著者 | Fujishiro, T, Ermler, U, Shima, S. | 登録日 | 2014-03-13 | 公開日 | 2014-08-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis Febs Lett., 588, 2014
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3WSI
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![BU of 3wsi by Molmil](/molmil-images/mine/3wsi) | EDTA-treated, reduced HcgD from Methanocaldococcus jannaschii | 分子名称: | FE (II) ION, PHOSPHATE ION, Putative GTP cyclohydrolase 1 type 2 | 著者 | Fujishiro, T, Ermler, U, Shima, S. | 登録日 | 2014-03-13 | 公開日 | 2014-08-27 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis Febs Lett., 588, 2014
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8I55
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![BU of 8i55 by Molmil](/molmil-images/mine/8i55) | |
8I56
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8I58
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![BU of 8i58 by Molmil](/molmil-images/mine/8i58) | Uroporphyrin I (UPI)-bound CfbA | 分子名称: | 3-[(1Z,9Z)-3,8,13,18-tetrakis(2-hydroxy-2-oxoethyl)-7,12,17-tris(3-hydroxy-3-oxopropyl)-21,23-dihydroporphyrin-2-yl]propanoic acid, Sirohydrochlorin cobaltochelatase | 著者 | Ogawa, S, Fujishiro, T. | 登録日 | 2023-01-24 | 公開日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (3.09 Å) | 主引用文献 | Substrate selectivity of CfbA To be published
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8I57
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![BU of 8i57 by Molmil](/molmil-images/mine/8i57) | Uroporphyrin III (UPIII)-bound CfbA | 分子名称: | 3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, Sirohydrochlorin cobaltochelatase | 著者 | Ogawa, S, Fujishiro, T. | 登録日 | 2023-01-24 | 公開日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (2.81 Å) | 主引用文献 | Substrate selectivity of CfbA To be published
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8IYU
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2ZQX
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![BU of 2zqx by Molmil](/molmil-images/mine/2zqx) | Cytochrome P450BSbeta cocrystallized with heptanoic acid | 分子名称: | Cytochrome P450 152A1, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Shoji, O, Fujishiro, T, Nagano, S, Hirose, T, Shiro, Y, Watanabe, Y. | 登録日 | 2008-08-22 | 公開日 | 2009-08-25 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.37 Å) | 主引用文献 | Understanding substrate misrecognition of hydrogen peroxide dependent cytochrome P450 from Bacillus subtilis. J.Biol.Inorg.Chem., 2010
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2ZQJ
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![BU of 2zqj by Molmil](/molmil-images/mine/2zqj) | Substrate-Free Form of Cytochrome P450BSbeta | 分子名称: | Cytochrome P450 152A1, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Shoji, O, Fujishiro, T, Nagano, S, Hirose, T, Shiro, Y, Watanabe, Y. | 登録日 | 2008-08-11 | 公開日 | 2009-09-01 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Understanding substrate misrecognition of hydrogen peroxide dependent cytochrome P450 from Bacillus subtilis. J.Biol.Inorg.Chem., 2010
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7CEP
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![BU of 7cep by Molmil](/molmil-images/mine/7cep) | Crystal structure of L-cycloserine-bound form of cysteine desulfurase SufS from Bacillus subtilis | 分子名称: | (5-hydroxy-6-methyl-4-{[(3-oxo-2,3-dihydro-1,2-oxazol-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ... | 著者 | Nakamura, R, Yasuhiro, T, Fujishiro, T. | 登録日 | 2020-06-24 | 公開日 | 2021-06-30 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | 主引用文献 | Cycloserine enantiomers inhibit PLP-dependent cysteine desulfurase SufS via distinct mechanisms. Febs J., 2022
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7XES
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![BU of 7xes by Molmil](/molmil-images/mine/7xes) | NifS with L-penicillamine | 分子名称: | (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, CHLORIDE ION, Cysteine desulfurase IscS, ... | 著者 | Nakamura, R, Fujishiro, T. | 登録日 | 2022-03-31 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine to be published
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7XEJ
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![BU of 7xej by Molmil](/molmil-images/mine/7xej) | SufS with D-cysteine for 5 min | 分子名称: | (2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid, 1,2-ETHANEDIOL, Cysteine desulfurase SufS, ... | 著者 | Nakamiura, R, Fujishiro, T. | 登録日 | 2022-03-31 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.74 Å) | 主引用文献 | X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine to be published
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7XEK
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![BU of 7xek by Molmil](/molmil-images/mine/7xek) | SufS with D-cysteine for 6 h | 分子名称: | (2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid, 1,2-ETHANEDIOL, Cysteine desulfurase SufS, ... | 著者 | Nakamura, R, Fujishiro, T. | 登録日 | 2022-03-31 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | 主引用文献 | X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine to be published
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7XEN
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![BU of 7xen by Molmil](/molmil-images/mine/7xen) | SufS with L-penicillamine | 分子名称: | (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, Cysteine desulfurase SufS | 著者 | Nakamura, R, Fujishiro, T. | 登録日 | 2022-03-31 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.47 Å) | 主引用文献 | X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine to be published
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7XET
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![BU of 7xet by Molmil](/molmil-images/mine/7xet) | SufS with beta-cyano-L-alanine | 分子名称: | (2~{E})-3-cyano-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylimino]propanoic acid, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ... | 著者 | Nakamura, R, Fujishiro, T. | 登録日 | 2022-03-31 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Inhibition mechanism of SufS by L-propargylglycine to be published
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7XEP
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![BU of 7xep by Molmil](/molmil-images/mine/7xep) | SufS with L-propargylglycine | 分子名称: | 1,2-ETHANEDIOL, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ... | 著者 | Nakamura, R, Fujishiro, T. | 登録日 | 2022-03-31 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | 主引用文献 | Inhibition mechanism of SufS by L-propargylglycine to be published
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7XEQ
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![BU of 7xeq by Molmil](/molmil-images/mine/7xeq) | NifS with D-cysteine | 分子名称: | (2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid, CHLORIDE ION, Cysteine desulfurase IscS, ... | 著者 | Nakamura, R, Fujishiro, T. | 登録日 | 2022-03-31 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine to be published
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7XEL
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![BU of 7xel by Molmil](/molmil-images/mine/7xel) | SufS soaked with D-penicillamine | 分子名称: | 1,2-ETHANEDIOL, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ... | 著者 | Nakamura, R, Fujishiro, T. | 登録日 | 2022-03-31 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine to be published
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7YB3
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![BU of 7yb3 by Molmil](/molmil-images/mine/7yb3) | SufS with D-cysteine for 1 min | 分子名称: | Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL | 著者 | Nakamura, R, Fujishiro, T. | 登録日 | 2022-06-28 | 公開日 | 2023-07-05 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Snapshots of thiazolidine fomration of PLP-dependent enzyme SufS to be published
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