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PDB: 104 件
6M2G
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BU of 6m2g by Molmil
Sirohydrochlorin nickelochelatase CfbA in complex with cobalt-sirohydrochlorin
分子名称: Sirohydrochlorin cobaltochelatase, cobalt-sirohydrochlorin
著者Fujishiro, T.
登録日2020-02-27
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.
Chem Sci, 12, 2021
6M28
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BU of 6m28 by Molmil
Sirohydrochlorin nickelochelatase CfbA in complex with Co2+
分子名称: COBALT (II) ION, Sirohydrochlorin cobaltochelatase
著者Fujishiro, T.
登録日2020-02-26
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.
Chem Sci, 12, 2021
6M2H
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BU of 6m2h by Molmil
A reaction intermediate of sirohydrochlorin nickelochelatase CfbA in complex with Ni2+ and sirohydrochlorin
分子名称: 3,3',3'',3'''-[(7S,8S,12S,13S)-3,8,13,17-tetrakis(carboxymethyl)-8,13-dimethyl-7,8,12,13-tetrahydroporphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, NICKEL (II) ION, Sirohydrochlorin cobaltochelatase
著者Fujishiro, T.
登録日2020-02-27
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.
Chem Sci, 12, 2021
6M2A
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BU of 6m2a by Molmil
A non-His-rich type of chimeric sirohydrochlorin nickelochelatase CfbA from M. jannaschii and M. barkeri
分子名称: SULFATE ION, Sirohydrochlorin cobaltochelatase,Sirohydrochlorin cobaltochelatase,Sirohydrochlorin cobaltochelatase
著者Fujishiro, T.
登録日2020-02-26
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.
Chem Sci, 12, 2021
6M2E
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BU of 6m2e by Molmil
Sirohydrochlorin nickelochelatase CfbA in complex with sirohydrochlorin
分子名称: 3,3',3'',3'''-[(7S,8S,12S,13S)-3,8,13,17-tetrakis(carboxymethyl)-8,13-dimethyl-7,8,12,13-tetrahydroporphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, Sirohydrochlorin cobaltochelatase
著者Fujishiro, T.
登録日2020-02-27
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.
Chem Sci, 12, 2021
6M2F
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BU of 6m2f by Molmil
Sirohydrochlorin nickelochelatase CfbA in complex with nickel-sirohydrochlorin
分子名称: Sirohydrochlorin cobaltochelatase, nickel-sirohydrochlorin
著者Fujishiro, T.
登録日2020-02-27
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.
Chem Sci, 12, 2021
7E0L
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BU of 7e0l by Molmil
Class III hybrid cluster protein (HCP) from Methanothermobacter marburgensis
分子名称: FE (III) ION, FE-S-O HYBRID CLUSTER, Hydroxylamine reductase, ...
著者Fujishiro, T.
登録日2021-01-28
公開日2022-02-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases
Nat Commun, 2023
7DE4
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Hybrid cluster protein (HCP) from Escherichia coli
分子名称: FE-S-O HYBRID CLUSTER, Hydroxylamine reductase, IRON/SULFUR CLUSTER
著者Fujishiro, T, Ooi, M, Takaoka, K, Takahashi, Y.
登録日2020-11-02
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.61 Å)
主引用文献Crystal structure of Escherichia coli class II hybrid cluster protein, HCP, reveals a [4Fe-4S] cluster at the N-terminal protrusion.
Febs J., 288, 2021
8IYU
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BU of 8iyu by Molmil
CfbA S11T variant with Ni(II) ions
分子名称: NICKEL (II) ION, Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-04-06
公開日2024-04-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I55
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BU of 8i55 by Molmil
Wild-type CfbA at 1.99 angstrom resolution
分子名称: Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I56
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BU of 8i56 by Molmil
CfbA S11T variant
分子名称: Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I58
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Uroporphyrin I (UPI)-bound CfbA
分子名称: 3-[(1Z,9Z)-3,8,13,18-tetrakis(2-hydroxy-2-oxoethyl)-7,12,17-tris(3-hydroxy-3-oxopropyl)-21,23-dihydroporphyrin-2-yl]propanoic acid, Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I57
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Uroporphyrin III (UPIII)-bound CfbA
分子名称: 3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Substrate selectivity of CfbA
To be published
3WB1
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BU of 3wb1 by Molmil
HcgB from Methanocaldococcus jannaschii
分子名称: SULFATE ION, Uncharacterized protein MJ0488
著者Tamura, H, Fujishiro, T, Ermler, U, Shima, S.
登録日2013-05-11
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
2ZQX
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BU of 2zqx by Molmil
Cytochrome P450BSbeta cocrystallized with heptanoic acid
分子名称: Cytochrome P450 152A1, PROTOPORPHYRIN IX CONTAINING FE
著者Shoji, O, Fujishiro, T, Nagano, S, Hirose, T, Shiro, Y, Watanabe, Y.
登録日2008-08-22
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Understanding substrate misrecognition of hydrogen peroxide dependent cytochrome P450 from Bacillus subtilis.
J.Biol.Inorg.Chem., 2010
2ZQJ
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BU of 2zqj by Molmil
Substrate-Free Form of Cytochrome P450BSbeta
分子名称: Cytochrome P450 152A1, PROTOPORPHYRIN IX CONTAINING FE
著者Shoji, O, Fujishiro, T, Nagano, S, Hirose, T, Shiro, Y, Watanabe, Y.
登録日2008-08-11
公開日2009-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Understanding substrate misrecognition of hydrogen peroxide dependent cytochrome P450 from Bacillus subtilis.
J.Biol.Inorg.Chem., 2010
5ZSS
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BU of 5zss by Molmil
L-Cysteine-PLP reaction intermediate of NifS from Hydrogenimonas thermophila
分子名称: Cysteine desulfurase, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
著者Nakamura, T, Fujishiro, T, Takahashi, Y.
登録日2018-04-29
公開日2019-05-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.17 Å)
主引用文献X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published
7YB3
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BU of 7yb3 by Molmil
SufS with D-cysteine for 1 min
分子名称: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
著者Nakamura, R, Fujishiro, T.
登録日2022-06-28
公開日2023-07-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Snapshots of thiazolidine fomration of PLP-dependent enzyme SufS
to be published
7XES
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BU of 7xes by Molmil
NifS with L-penicillamine
分子名称: (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEJ
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SufS with D-cysteine for 5 min
分子名称: (2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid, 1,2-ETHANEDIOL, Cysteine desulfurase SufS, ...
著者Nakamiura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEK
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SufS with D-cysteine for 6 h
分子名称: (2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid, 1,2-ETHANEDIOL, Cysteine desulfurase SufS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEN
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SufS with L-penicillamine
分子名称: (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, Cysteine desulfurase SufS
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XET
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SufS with beta-cyano-L-alanine
分子名称: (2~{E})-3-cyano-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylimino]propanoic acid, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Inhibition mechanism of SufS by L-propargylglycine
to be published
7XEP
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BU of 7xep by Molmil
SufS with L-propargylglycine
分子名称: 1,2-ETHANEDIOL, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Inhibition mechanism of SufS by L-propargylglycine
to be published
7XEQ
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BU of 7xeq by Molmil
NifS with D-cysteine
分子名称: (2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published

221371

件を2024-06-19に公開中

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