Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 104 件
6M2F
DownloadVisualize
BU of 6m2f by Molmil
Sirohydrochlorin nickelochelatase CfbA in complex with nickel-sirohydrochlorin
分子名称: Sirohydrochlorin cobaltochelatase, nickel-sirohydrochlorin
著者Fujishiro, T.
登録日2020-02-27
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.
Chem Sci, 12, 2021
6JZW
DownloadVisualize
BU of 6jzw by Molmil
Crystal structure of SufU from Bacillus subtilis with Cys persulfurated
分子名称: ZINC ION, Zinc-dependent sulfurtransferase SufU
著者Fujishiro, T, Takahashi, Y.
登録日2019-05-04
公開日2020-05-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Zinc-persulfide complex for sulfur mobilization by SufU in SUF-like machinery for Fe-S cluster biosynthesis
to be published
6JZV
DownloadVisualize
BU of 6jzv by Molmil
Crystal structure of SufU from Bacillus subtilis
分子名称: ZINC ION, Zinc-dependent sulfurtransferase SufU
著者Fujishiro, T, Takahashi, Y.
登録日2019-05-04
公開日2020-05-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Zinc-persulfide complex for sulfur mobilization by SufU in SUF-like machinery for Fe-S cluster biosynthesis
to be published
7E0L
DownloadVisualize
BU of 7e0l by Molmil
Class III hybrid cluster protein (HCP) from Methanothermobacter marburgensis
分子名称: FE (III) ION, FE-S-O HYBRID CLUSTER, Hydroxylamine reductase, ...
著者Fujishiro, T.
登録日2021-01-28
公開日2022-02-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases
Nat Commun, 2023
7WSX
DownloadVisualize
BU of 7wsx by Molmil
Class III hybrid cluster protein (HCP) C67Y variant from Methanothermobacter marburgensis
分子名称: FE-S-O HYBRID CLUSTER, Hydroxylamine reductase
著者Fujishiro, T.
登録日2022-02-02
公開日2023-02-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases.
Nat Commun, 14, 2023
3AWM
DownloadVisualize
BU of 3awm by Molmil
Cytochrome P450SP alpha (CYP152B1) wild-type with palmitic acid
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Fatty acid alpha-hydroxylase, PALMITIC ACID, ...
著者Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2011-03-25
公開日2011-06-29
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position
J.Biol.Chem., 286, 2011
3AWP
DownloadVisualize
BU of 3awp by Molmil
Cytochrome P450SP alpha (CYP152B1) mutant F288G
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Fatty acid alpha-hydroxylase, PALMITIC ACID, ...
著者Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2011-03-25
公開日2011-06-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position.
J.Biol.Chem., 286, 2011
3AWQ
DownloadVisualize
BU of 3awq by Molmil
Cytochrome P450SP alpha (CYP152B1) mutant L78F
分子名称: Fatty acid alpha-hydroxylase, PALMITIC ACID, PROTOPORPHYRIN IX CONTAINING FE
著者Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2011-03-25
公開日2011-06-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position.
J.Biol.Chem., 286, 2011
5XT5
DownloadVisualize
BU of 5xt5 by Molmil
SufS-SufU complex from Bacillus subtilis
分子名称: Cysteine desulfurase SufS, PYRIDOXAL-5'-PHOSPHATE, ZINC ION, ...
著者Fujishiro, T, Takahashi, Y.
登録日2017-06-17
公開日2017-12-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis
J. Am. Chem. Soc., 139, 2017
5XT6
DownloadVisualize
BU of 5xt6 by Molmil
A sulfur-transferring catalytic intermediate of SufS-SufU complex from Bacillus subtilis
分子名称: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, Cysteine desulfurase SufS, ZINC ION, ...
著者Fujishiro, T, Kunichika, K, Takahashi, Y.
登録日2017-06-17
公開日2017-12-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis
J. Am. Chem. Soc., 139, 2017
3VM4
DownloadVisualize
BU of 3vm4 by Molmil
Cytochrome P450SP alpha (CYP152B1) in complex with (R)-ibuprophen
分子名称: (2R)-2-[4-(2-methylpropyl)phenyl]propanoic acid, (4R)-2-METHYLPENTANE-2,4-DIOL, Fatty acid alpha-hydroxylase, ...
著者Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2011-12-08
公開日2012-05-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Chiral-substrate-assisted stereoselective epoxidation catalyzed by H2O2-dependent cytochrome P450SP alpha
Chem Asian J, 7, 2012
5WT5
DownloadVisualize
BU of 5wt5 by Molmil
L-homocysteine-bound NifS from Helicobacter pylori
分子名称: 2-AMINO-4-MERCAPTO-BUTYRIC ACID, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL
著者Fujishiro, T, Takahashi, Y.
登録日2016-12-09
公開日2017-12-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis
to be published
5WT2
DownloadVisualize
BU of 5wt2 by Molmil
NifS from Helicobacter pylori
分子名称: CHLORIDE ION, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, ...
著者Fujishiro, T, Takahashi, Y.
登録日2016-12-09
公開日2017-12-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 2019
5ZT8
DownloadVisualize
BU of 5zt8 by Molmil
SirB from Bacillus subtilis
分子名称: Sirohydrochlorin ferrochelatase
著者Fujishiro, T.
登録日2018-05-02
公開日2019-02-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of sirohydrochlorin ferrochelatase SirB: the last of the structures of the class II chelatase family.
Dalton Trans, 48, 2019
5WT6
DownloadVisualize
BU of 5wt6 by Molmil
Cysteine persulfide intermediate of NifS from Helicobacter pylori
分子名称: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Fujishiro, T, Nakamura, R, Takahashi, Y.
登録日2016-12-09
公開日2017-12-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis
To be published
5ZTA
DownloadVisualize
BU of 5zta by Molmil
SirB from Bacillus subtilis with Fe3+
分子名称: FE (III) ION, Sirohydrochlorin ferrochelatase
著者Fujishiro, T.
登録日2018-05-02
公開日2019-06-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.07 Å)
主引用文献A route for metal acquisition for chelatase reaction catalyzed by SirB from Bacillus subtilis
To be published
5ZT7
DownloadVisualize
BU of 5zt7 by Molmil
SirB from Bacillus subtilis with Co2+
分子名称: COBALT (II) ION, Sirohydrochlorin ferrochelatase
著者Fujishiro, T.
登録日2018-05-02
公開日2019-02-27
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.94 Å)
主引用文献Structure of sirohydrochlorin ferrochelatase SirB: the last of the structures of the class II chelatase family.
Dalton Trans, 48, 2019
5ZT9
DownloadVisualize
BU of 5zt9 by Molmil
SirB from Bacillus subtilis with Ni2+
分子名称: NICKEL (II) ION, Sirohydrochlorin ferrochelatase
著者Fujishiro, T.
登録日2018-05-02
公開日2019-06-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A route for metal acquisition for chelatase reaction catalyzed by SirB from Bacillus subtilis
To be published
3VTJ
DownloadVisualize
BU of 3vtj by Molmil
Cytochrome P450SP alpha (CYP152B1) mutant A245H
分子名称: Fatty acid alpha-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE
著者Fujishiro, T, Shoji, O, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2012-05-30
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献A substrate-binding-state mimic of H2O2-dependent cytochrome P450 produced by one-point mutagenesis and peroxygenation of non-native substrates
Catalysis Science And Technology, 6, 2016
3WSG
DownloadVisualize
BU of 3wsg by Molmil
Reduced HcgD from Methanocaldococcus jannaschii with citrate
分子名称: CITRIC ACID, FE (II) ION, Putative GTP cyclohydrolase 1 type 2
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-03-13
公開日2014-08-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.996 Å)
主引用文献A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
3WV7
DownloadVisualize
BU of 3wv7 by Molmil
HcgE from Methanothermobacter marburgensis
分子名称: ADENOSINE-5'-DIPHOSPHATE, Hmd co-occurring protein HcgE
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WB0
DownloadVisualize
BU of 3wb0 by Molmil
HcgB from Methanocaldococcus jannaschii in complex with light-decomposed FeGP cofactor of [Fe]-hydrogenase
分子名称: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, Uncharacterized protein MJ0488
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2013-05-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
3WV8
DownloadVisualize
BU of 3wv8 by Molmil
ATP-bound HcgE from Methanothermobacter marburgensis
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Hmd co-occurring protein HcgE, SULFATE ION
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WSD
DownloadVisualize
BU of 3wsd by Molmil
Oxidized HcgD from Methanocaldococcus jannaschii
分子名称: CHLORIDE ION, FE (III) ION, Putative GTP cyclohydrolase 1 type 2
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-03-13
公開日2014-08-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
3WV9
DownloadVisualize
BU of 3wv9 by Molmil
Guanylylpyridinol (GP)- and ATP-bound HcgE from Methanothermobacter marburgensis
分子名称: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, ADENOSINE-5'-TRIPHOSPHATE, Hmd co-occurring protein HcgE, ...
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon