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PDB: 104 件
6JZW
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BU of 6jzw by Molmil
Crystal structure of SufU from Bacillus subtilis with Cys persulfurated
分子名称: ZINC ION, Zinc-dependent sulfurtransferase SufU
著者Fujishiro, T, Takahashi, Y.
登録日2019-05-04
公開日2020-05-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Cysteine-Persulfide Sulfane Sulfur-Ligated Zn Complex of Sulfur-Carrying SufU in the SufCDSUB System for Fe-S Cluster Biosynthesis.
Inorg.Chem., 2024
6JZV
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BU of 6jzv by Molmil
Crystal structure of SufU from Bacillus subtilis
分子名称: ZINC ION, Zinc-dependent sulfurtransferase SufU
著者Fujishiro, T, Takahashi, Y.
登録日2019-05-04
公開日2020-05-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Cysteine-Persulfide Sulfane Sulfur-Ligated Zn Complex of Sulfur-Carrying SufU in the SufCDSUB System for Fe-S Cluster Biosynthesis.
Inorg.Chem., 2024
5D5P
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BU of 5d5p by Molmil
HcgB from Methanococcus maripaludis
分子名称: HcgB
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-11
公開日2016-10-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Towards artificial methanogenesis: biosynthesis of the [Fe]-hydrogenase cofactor and characterization of the semi-synthetic hydrogenase.
Faraday Discuss., 198, 2017
5D4V
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BU of 5d4v by Molmil
HcgC with SAH and a guanylylpyridinol (GP) derivative
分子名称: 5'-O-[(R)-[(3,6-dimethyl-2-oxo-1,2-dihydropyridin-4-yl)oxy](hydroxy)phosphoryl]guanosine, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-09
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D4T
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BU of 5d4t by Molmil
SeMet-labelled HcgC from Methanocaldococcus jannaschii in space group P212121
分子名称: Uncharacterized protein MJ0489
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-09
公開日2016-07-20
最終更新日2016-08-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D5T
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BU of 5d5t by Molmil
SeMet-labelled HcgC from Methanocaldococcus jannaschii in P1 space group
分子名称: Uncharacterized protein MJ0489
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-11
公開日2016-07-20
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D4U
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BU of 5d4u by Molmil
SAM-bound HcgC from Methanocaldococcus jannaschii
分子名称: S-ADENOSYLMETHIONINE, SULFATE ION, Uncharacterized protein MJ0489
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-09
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D5Q
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BU of 5d5q by Molmil
HcgB from Methanocaldococcus jannaschii with the pyridinol derived from FeGP cofactor of [Fe]-hydrogenase
分子名称: (4,6-dihydroxy-3,5-dimethylpyridin-2-yl)acetic acid, Uncharacterized protein MJ0488, Guanylyltransferase
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-11
公開日2016-10-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Towards artificial methanogenesis: biosynthesis of the [Fe]-hydrogenase cofactor and characterization of the semi-synthetic hydrogenase.
Faraday Discuss., 198, 2017
5D5O
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BU of 5d5o by Molmil
HcgC from Methanocaldococcus jannaschii
分子名称: SULFATE ION, Uncharacterized protein MJ0489
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-11
公開日2016-07-20
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5XT6
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A sulfur-transferring catalytic intermediate of SufS-SufU complex from Bacillus subtilis
分子名称: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, Cysteine desulfurase SufS, ZINC ION, ...
著者Fujishiro, T, Kunichika, K, Takahashi, Y.
登録日2017-06-17
公開日2017-12-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis
J. Am. Chem. Soc., 139, 2017
5XT5
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SufS-SufU complex from Bacillus subtilis
分子名称: Cysteine desulfurase SufS, PYRIDOXAL-5'-PHOSPHATE, ZINC ION, ...
著者Fujishiro, T, Takahashi, Y.
登録日2017-06-17
公開日2017-12-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis
J. Am. Chem. Soc., 139, 2017
4YT4
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BU of 4yt4 by Molmil
Iron guanylylpyridinol (FeGP) cofactor-reconstituted HmdII from Methanocaldococcus jannaschii
分子名称: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, iron-guanylyl pyridinol cofactor
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2015-07-01
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YT8
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BU of 4yt8 by Molmil
SeMet-labelled HmdII from Methanocaldococcus jannaschii
分子名称: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2015-07-01
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.902 Å)
主引用文献Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YT2
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Hmd II from Methanocaldococcus jannaschii
分子名称: DI(HYDROXYETHYL)ETHER, H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2015-07-01
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YTE
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BU of 4yte by Molmil
N-terminal domain of HmdIII from Methanocaldococcus jannaschii
分子名称: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ0715
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2016-03-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献N-terminal domain of HmdIII from Methanocaldococcus jannaschii
to be published
4YT5
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BU of 4yt5 by Molmil
HmdII from Methanocaldococcus jannaschii with bound methylene-tetrahydromethanopterin
分子名称: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN, H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2015-07-01
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
5WT4
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BU of 5wt4 by Molmil
L-Cysteine-PLP intermediate of NifS from Helicobacter pylori
分子名称: Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
著者Fujishiro, T, Nakamura, R, Takahashi, T.
登録日2016-12-09
公開日2017-12-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.92 Å)
主引用文献Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 2019
5ZT8
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BU of 5zt8 by Molmil
SirB from Bacillus subtilis
分子名称: Sirohydrochlorin ferrochelatase
著者Fujishiro, T.
登録日2018-05-02
公開日2019-02-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of sirohydrochlorin ferrochelatase SirB: the last of the structures of the class II chelatase family.
Dalton Trans, 48, 2019
5ZTA
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BU of 5zta by Molmil
SirB from Bacillus subtilis with Fe3+
分子名称: FE (III) ION, Sirohydrochlorin ferrochelatase
著者Fujishiro, T.
登録日2018-05-02
公開日2019-06-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.07 Å)
主引用文献A route for metal acquisition for chelatase reaction catalyzed by SirB from Bacillus subtilis
To be published
5ZT7
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BU of 5zt7 by Molmil
SirB from Bacillus subtilis with Co2+
分子名称: COBALT (II) ION, Sirohydrochlorin ferrochelatase
著者Fujishiro, T.
登録日2018-05-02
公開日2019-02-27
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.94 Å)
主引用文献Structure of sirohydrochlorin ferrochelatase SirB: the last of the structures of the class II chelatase family.
Dalton Trans, 48, 2019
5ZT9
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BU of 5zt9 by Molmil
SirB from Bacillus subtilis with Ni2+
分子名称: NICKEL (II) ION, Sirohydrochlorin ferrochelatase
著者Fujishiro, T.
登録日2018-05-02
公開日2019-06-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A route for metal acquisition for chelatase reaction catalyzed by SirB from Bacillus subtilis
To be published
5WT5
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BU of 5wt5 by Molmil
L-homocysteine-bound NifS from Helicobacter pylori
分子名称: 2-AMINO-4-MERCAPTO-BUTYRIC ACID, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL
著者Fujishiro, T, Takahashi, Y.
登録日2016-12-09
公開日2017-12-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis
to be published
5WT6
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BU of 5wt6 by Molmil
Cysteine persulfide intermediate of NifS from Helicobacter pylori
分子名称: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Fujishiro, T, Nakamura, R, Takahashi, Y.
登録日2016-12-09
公開日2017-12-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis
To be published
7WSX
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BU of 7wsx by Molmil
Class III hybrid cluster protein (HCP) C67Y variant from Methanothermobacter marburgensis
分子名称: FE-S-O HYBRID CLUSTER, Hydroxylamine reductase
著者Fujishiro, T.
登録日2022-02-02
公開日2023-02-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases.
Nat Commun, 14, 2023
5WT2
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BU of 5wt2 by Molmil
NifS from Helicobacter pylori
分子名称: CHLORIDE ION, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, ...
著者Fujishiro, T, Takahashi, Y.
登録日2016-12-09
公開日2017-12-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 2019

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件を2024-10-16に公開中

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