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PDB: 104 件
3VTJ
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Cytochrome P450SP alpha (CYP152B1) mutant A245H
分子名称: Fatty acid alpha-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE
著者Fujishiro, T, Shoji, O, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2012-05-30
公開日2013-06-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献A substrate-binding-state mimic of H2O2-dependent cytochrome P450 produced by one-point mutagenesis and peroxygenation of non-native substrates
Catalysis Science And Technology, 6, 2016
3WV8
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ATP-bound HcgE from Methanothermobacter marburgensis
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Hmd co-occurring protein HcgE, SULFATE ION
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WVB
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HcgF from Methanocaldococcus jannaschii
分子名称: UPF0254 protein MJ1251
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WVC
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Guanylylpyridinol (GP)-bound HcgF from Methanocaldococcus jannaschii
分子名称: 5'-O-[(R)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxo-2-sulfanylethyl)pyridin-4-yl]oxy}phosphoryl]guanosine, 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, SULFATE ION, ...
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WVA
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BU of 3wva by Molmil
SeMet-labelled HcgF from Methanocaldococcus jannaschii
分子名称: UPF0254 protein MJ1251
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WB0
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HcgB from Methanocaldococcus jannaschii in complex with light-decomposed FeGP cofactor of [Fe]-hydrogenase
分子名称: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, Uncharacterized protein MJ0488
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2013-05-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
3WV7
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HcgE from Methanothermobacter marburgensis
分子名称: ADENOSINE-5'-DIPHOSPHATE, Hmd co-occurring protein HcgE
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WB2
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HcgB from Methanocaldococcus jannaschii in complex with the guanylyl-pyridinol product in a model reaction of [Fe]-hydrogenase cofactor biosynthesis
分子名称: 5'-O-[(R)-[(3,6-dimethyl-2-oxo-1,2-dihydropyridin-4-yl)oxy](hydroxy)phosphoryl]guanosine, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2013-05-11
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
8I56
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CfbA S11T variant
分子名称: Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I58
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Uroporphyrin I (UPI)-bound CfbA
分子名称: 3-[(1Z,9Z)-3,8,13,18-tetrakis(2-hydroxy-2-oxoethyl)-7,12,17-tris(3-hydroxy-3-oxopropyl)-21,23-dihydroporphyrin-2-yl]propanoic acid, Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I57
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Uroporphyrin III (UPIII)-bound CfbA
分子名称: 3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Substrate selectivity of CfbA
To be published
8I55
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Wild-type CfbA at 1.99 angstrom resolution
分子名称: Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-01-24
公開日2024-01-31
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Substrate selectivity of CfbA
To be published
8IYU
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CfbA S11T variant with Ni(II) ions
分子名称: NICKEL (II) ION, Sirohydrochlorin cobaltochelatase
著者Ogawa, S, Fujishiro, T.
登録日2023-04-06
公開日2024-04-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate selectivity of CfbA
To be published
2ZQX
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BU of 2zqx by Molmil
Cytochrome P450BSbeta cocrystallized with heptanoic acid
分子名称: Cytochrome P450 152A1, PROTOPORPHYRIN IX CONTAINING FE
著者Shoji, O, Fujishiro, T, Nagano, S, Hirose, T, Shiro, Y, Watanabe, Y.
登録日2008-08-22
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Understanding substrate misrecognition of hydrogen peroxide dependent cytochrome P450 from Bacillus subtilis.
J.Biol.Inorg.Chem., 2010
2ZQJ
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BU of 2zqj by Molmil
Substrate-Free Form of Cytochrome P450BSbeta
分子名称: Cytochrome P450 152A1, PROTOPORPHYRIN IX CONTAINING FE
著者Shoji, O, Fujishiro, T, Nagano, S, Hirose, T, Shiro, Y, Watanabe, Y.
登録日2008-08-11
公開日2009-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Understanding substrate misrecognition of hydrogen peroxide dependent cytochrome P450 from Bacillus subtilis.
J.Biol.Inorg.Chem., 2010
7XEN
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SufS with L-penicillamine
分子名称: (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, Cysteine desulfurase SufS
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEQ
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BU of 7xeq by Molmil
NifS with D-cysteine
分子名称: (2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEL
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BU of 7xel by Molmil
SufS soaked with D-penicillamine
分子名称: 1,2-ETHANEDIOL, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEJ
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SufS with D-cysteine for 5 min
分子名称: (2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid, 1,2-ETHANEDIOL, Cysteine desulfurase SufS, ...
著者Nakamiura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XEP
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BU of 7xep by Molmil
SufS with L-propargylglycine
分子名称: 1,2-ETHANEDIOL, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Inhibition mechanism of SufS by L-propargylglycine
to be published
7XEK
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SufS with D-cysteine for 6 h
分子名称: (2~{S},4~{S})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-1,3-thiazolidine-4-carboxylic acid, 1,2-ETHANEDIOL, Cysteine desulfurase SufS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7XET
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SufS with beta-cyano-L-alanine
分子名称: (2~{E})-3-cyano-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylimino]propanoic acid, Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Inhibition mechanism of SufS by L-propargylglycine
to be published
7XES
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NifS with L-penicillamine
分子名称: (2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid, CHLORIDE ION, Cysteine desulfurase IscS, ...
著者Nakamura, R, Fujishiro, T.
登録日2022-03-31
公開日2023-04-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
to be published
7YB3
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SufS with D-cysteine for 1 min
分子名称: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
著者Nakamura, R, Fujishiro, T.
登録日2022-06-28
公開日2023-07-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Snapshots of thiazolidine fomration of PLP-dependent enzyme SufS
to be published
5ZSS
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L-Cysteine-PLP reaction intermediate of NifS from Hydrogenimonas thermophila
分子名称: Cysteine desulfurase, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
著者Nakamura, T, Fujishiro, T, Takahashi, Y.
登録日2018-04-29
公開日2019-05-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.17 Å)
主引用文献X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published

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